EsuBft225_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft225_15a-0001
Unique NameEsuBft225_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:797533..801697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G402
ProteomeIdEsuBft225_15
Protein domainsIPR022775
Protein domainsIPR011012
Protein domainsPTHR11043
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Notecoatomer subunit zeta-1 os:arabidopsis thaliana gn:at1g60970 pe:2 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1543
Hectar predicted targeting categoryother localisation
Evalue1.67e-117
EggNOG OGsCOG5541@1|root,KOG3343@2759|Eukaryota
Ec32 ortholog descriptionCoatomer protein complex, zeta sub-unit
Ec32 orthologEc-19_000620.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCOPZ1
KEGG koko:K20472
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0009994,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019953,GO:0022412,GO:0022414,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030135,GO:0030137,GO:0030154,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046907,GO:0048193,GO:0048468,GO:0048475,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:1901998,GO:1905952
Descriptionvesicle-mediated transport
COG categoryO
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0006950
GO0048205
GO0006891
GO0006890
GO0005829
GO0030126
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15aEsuBft225_15aEctocarpus subulatus male Bft15bgeneScaffold_523 797533..801697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15a-0001EsuBft225_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 798463..801630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15a-0001-exonagat-exon-54608Ectocarpus subulatus male Bft15bexonScaffold_523 797533..798510 -
EsuBft225_15a-0001-exonEsuBft225_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 799253..799423 -
EsuBft225_15a-0001-exonagat-exon-54609Ectocarpus subulatus male Bft15bexonScaffold_523 799899..799985 -
EsuBft225_15a-0001-exonagat-exon-54607Ectocarpus subulatus male Bft15bexonScaffold_523 800282..800368 -
EsuBft225_15a-0001-exonagat-exon-54606Ectocarpus subulatus male Bft15bexonScaffold_523 800631..800774 -
EsuBft225_15a-0001-exonagat-exon-54605Ectocarpus subulatus male Bft15bexonScaffold_523 801622..801697 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15a-0001-exonagat-three_prime_utr-9001Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 797533..798462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15a-0001-cdsEsuBft225_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 798463..798510 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_15a-0001-exonagat-five_prime_utr-5802Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 801631..801697 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft225_15a-0001 ID=EsuBft225_15a-0001|Name=EsuBft225_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1543bp|location=Sequence derived from alignment at Scaffold_523:797533..801697- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAGAGCATTGCTGCTGGTGTTTGCGCTACTCGGCCTGTCGACGCGTACT
CTCCCGGGCAAAGCACCATGGCGTTGGAACTGCTCCCGCAAGTCAAGGCC
ATCCTCATCCTTGACGAGGATGGTGGCCGCGTTTCTTGCAAGTACCACGA
CCGCAAGGAGTTCCCAAACCTCGGAGCGGAGGCGATGTTCGAGCACAAGC
TCTTCAGAAAGACTAAGAGCGTACATGCTCCCACGGAGGCGGACGTGGTT
TTGCTTGACGACGTCGTGGCGGTGTTCAGGAGCGGGCTCGACGTGCATCT
CTATGTCGTTGGGTCTACGGATGAGAACGAGCTCATCCTCACAGCCGTGC
TGGACGCTTTGCACGAGACCCTTCTCATCCTTCTTCGGGGACAGATCGAC
CGGCGAACTCTGCTGGACAACCTCGCCCTGGTGTTGCTGTCCATCGACGA
GCTCGTGGACGCGGGAAAGATTTTGGAGATCGACCCCTCGGCGATTGCGA
ACAGGGTGCTCATGCGCGGGGCTGACGCGCGGGCCCCCCAGAATTCAGAC
GTGAACATCCCCCAGGCGATCGCATCGGTACGCGAAGAGTTTATCAAGCG
AATGGGAAACTGATGAGCGGGCGACCTAGCCTGCTGGTTTTGGACGCGGC
GGGGAGCGGAGTGGAGCGCATGCGGATGCTACCACACGCTACCGTGGTGG
TTTGGCTGTTTGGGGGTGATGGCTATGCAACCATTTTTGGGTTGTACAGT
ATTGGGCTAGACCGTGGGATCGGTGCCTCAGATGAGCAATTCTAAACAGT
TCATTCCCCTCTGACGGACGGGATCCTTCAAGGATCACGATCACGGTTGG
TCAATTGCACGGTGGCCTAGGCTTCGGGTTATTTGCTTCCCCCGCAGAGT
TTCACGCAGTTTGTATCCACGTAGTCGAAACGGTAGTTTTGTCAGGTTAG
AACCGAGAGGGGTTTGGATGGCAAAGCGGTTGGTGACCTTTTTTGGACAG
CCACGCATGCTGCATGACCACGCGTCGTAACGTTTTCATCCGCCCAAGCG
CCGTCCATCCGTCTAATCGCCACTCACTCGTAATCCCCTCATCACCGGGC
CAGCGTGTTGCGCCTTTGGTAGGTATGCTGCATCTTGTGCGAGCTAGAGG
TTGTTGTACGAGGGGTGGTGGGGTTGTTCGTTTTAGGGTGTGGGTGGACA
AGACACCAGGGGGAAAACTTGACTCGTAACCACGTACACAACTTGACAGA
ATGTAATGATCTCCAGGGTTCAACTCAACACTTCTCGGAACACAAAAACT
TGAACCCCCCGCTGGTTTTCGTTTTCACCGTGACCCGTCGGGAACTTGGA
GGTTTCATGTGGTGCCGCGACGTGAAAGACGCAAAGCTGCAAATGGCGAT
GGCATACATGCGCAGGGTTGTGTGCAGGGATTTGCCAAGGGTGTTGGTAT
TTCGAGCGCCAAACCTGCTTGCTGCGTTCCCCGCGTCCTGTTTCCGTGCG
GCAGGCAAGCGTCTTGCTGTTGTCAAGCCGTATCTACGCGTGT
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protein sequence of EsuBft225_15a-0001

>EsuBft225_15 ID=EsuBft225_15|Name=EsuBft225_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MALELLPQVKAILILDEDGGRVSCKYHDRKEFPNLGAEAMFEHKLFRKTK
SVHAPTEADVVLLDDVVAVFRSGLDVHLYVVGSTDENELILTAVLDALHE
TLLILLRGQIDRRTLLDNLALVLLSIDELVDAGKILEIDPSAIANRVLMR
GADARAPQNSDVNIPQAIASVREEFIKRMGN
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mRNA from alignment at Scaffold_523:797533..801697-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft225_15a-0001 ID=EsuBft225_15a-0001|Name=EsuBft225_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4165bp|location=Sequence derived from alignment at Scaffold_523:797533..801697- (Ectocarpus subulatus male Bft15b)
TCAGAGCATTGCTGCTGGTGTTTGCGCTACTCGGCCTGTCGACGCGTACT
CTCCCGGGCAAAGCACCATGGCGTTGGTGAGTGAGGGTCTCTTGTACTGC
AAGGTCGTGTGTCGAATCTGTATTGGAGGGGGTGTCTACTGAGTATCCAG
TTGTGCGGAGGGACAAGAAGCAAGGGCCTCCCGATTCTACATACTTTGTA
GGAGAGAGGTGGACAGAGGCCCACAGCACAGCAGCGATATTCTGCTGCTA
TCGCAACCGCGCTGTTGATTGTCCTGGTGTGTCAGGCGGTGCAGGAGGCG
TCGTAATCAATCGAAGTATGAAATGTGAACCCTGAATAGCGGTGTGCCTA
CTGCGGTTTATGGTTTTCCGCCAGAAGAGGGGTCACAGCAGCGGACCATC
TCGCACCTCACCCACGTGCACCAGCGCTCTTTCGTACATGTGTGCTTCAG
CTGAAAACGATCTCATCACGACCAATGTAGCGTAGAAGAAGAATGTGGCT
TTGATGCATTGGTAAAATAGCCATACCCGAAAAGTAAAACCCTCATTTAT
GGGAATCACAGAACGTGTTGTTCCAGTTAGTTGGCCCAAAAGAGGAATCG
TAGCCGATGCTGGCTGGCTCATGTAGCGAAGAACAGCAGCAATATTGGGG
CGGTCCAGTGTTGCACACAAGACAACTCCTGTTGCATCGCCATATCCCGA
AAGGGTGCTTCACTAGGCTACACCCACCCTTCTCACCCGCGTCAACTCTT
TCTCTCTCTTCACCCCGATGTAGCGTGTTGCATGCCCACCCCCACCCCTC
CTCCTCGTACCCATGATGCTCGCCTGCGGAGCCCCATCTCCTGCCGCCGA
CACCAATCGCTCGACACATGACGCCGTCCGAACACCTGCAACAACCCCGT
GATGTCGTGCCAACACGAAACAGGAACTGCTCCCGCAAGTCAAGGCCATC
CTCATCCTTGACGAGGATGGTGGCCGCGTTTCTTGCAAGTACCACGACCG
CAAGGAGTTCCCAAACCTCGGAGCGGAGGCGATGTTCGAGCACAAGCTCT
TCAGAAAGACTAAGAGCGTGAGTTTATCCGCGAAACGACGGGTGTCGAGG
GACCCTCCGAGAAGGTCACTCTGTTCTTTACGTCTGGTCGTACGTGCTGC
GGGATGCACGGGTCGTACTCTCTCTCGCTCTGTCTCTCTCTCTCGCTCTG
TCTCTCTCGCTCTCTCTCGCTCTCTCTCGCTCTGTCTCTGCTCCTCGTCG
ACCGTTCTCCCCTCACCCCTCGCCCGCCCGCCTGAGTCCCCCCTCCTGCT
CTGTCGCACGCGTGTGATTGGCGCGCTAGGTACATGCTCCCACGGAGGCG
GACGTGGTTTTGCTTGACGACGTCGTGGCGGTGTTCAGGAGCGGGCTCGA
CGTGCATCTCTATGTCGTGAGTCTAAGTAGTCTCGGGACCGGGGGGCATG
GCTCTGTTGAAATATTCGATTCTGCACCTCGAGAGTGCCACCAAATATTC
CAGTAGCAGGACGTGCCATCTCCTCTCTCGGTTGTGTTTTGTACTTGAAG
CAAACTCTGAGGTCGCCGCGGCCGGGCTAAGATAGGACGGCTAGACGGGC
TAGGGAGCATTGCAAATCGGCCGTGTCTTTCGATGAACTGCCGCAACGAT
CGAGTGTGGCGGTGTGTTTGTGTCCTATTAGTGTCTTGATACGTGAAATG
GCGTTACCGCAGGTTGGGTCTACGGATGAGAACGAGCTCATCCTCACAGC
CGTGCTGGACGCTTTGCACGAGACCCTTCTCATCCTTCTTCGGGGACAGG
TGTGTACTCCCGAACCTTTAGAAGTGTCTACGGTCGCAGGCGTTATGGCG
CAGAGCTAGATTTACATCAGACCCGAAGGGCGGCATTTAGCGTTGTCATG
CTTGCGACTTGCTGCAAATAGTAGTACGCCAGCCTCGCGCGGTTCCACCC
GCCAAGGGATTGGCGGAGCAGGCGCTGTTTGACCCATCAAGAGCTTGAGC
CAGCCAAAATGGCTTCTGGTGTTTTCCCAAGCGACCCGTGTGATTTTTTT
TAGGGTGTTCTGTTGTCGTAGGGTGATGCAGGCATCCTCCCGGGGGGAGC
GATGTTTCACGCAGCCGCGCTGTTGCCGCGACGAGCTTATGTTCTTCTGG
TTATTTTCGCGACTTCGTTCGTGTGTTGGTGGTTAACCACTTGTCAGTTC
TGACCCCCCTCCTCCCGCCTACAGTAGCCTTTACCCTTCCCTCGGCGTGC
GTTGCCCCCCGGCGGCGGTTCTAGATCGACCGGCGAACTCTGCTGGACAA
CCTCGCCCTGGTGTTGCTGTCCATCGACGAGCTCGTGGACGCGGGAAAGA
TTTTGGAGATCGACCCCTCGGCGATTGCGAACAGGGTGCTCATGCGCGGG
GCTGACGCGCGGGCCCCCCAGAATTCAGACGTGAACATCCCCCAGGTACG
GGACAGCGGGCAGTCCGGTACTGCTGTATGGCACATTCGGGACGGGTATT
TTACTTTACCCCGTCCTTTTTCCATCTGTCGCGGTATGGACTGCCCATAC
TGTGCGGTTCCGCCGCCCCTGTTTGATGACCGTAGTCCAGGATCGCACAG
TATGTATCCTCTGCAATGCGTGGTACACTAGTCAATTGCTTCACGCCACC
GGTGAAGCGATTCAAGTAAGGAGAAGAGCAGGTAAAGGATGTGAATCAAT
GGAAAATTGCAGGCTGCGACCCAAAATCTAAATGCGGCCAAGAGTTTCGT
GCGTGTGAACAGCGGTGCTCCACAGGCAATCGGGTCTCGGTTTGGTGTGA
ATCGTGTTTAGTTTGGGCACCAAGAAGGGCGGGGTCAGGTGTGTCAAACG
CACCGATTCGAAGGCAAAACAGCTTGCCCCTTCGTGGTGTCGATCAGGTT
CAGTTTTGGGGAGCGCAGCGCCGTCCAGTGGGGGTGCCGCTTGATTAGTC
AACAAAGCACTCGCTCTATTCGGTAACAGTTCACAGCAATGCTTTGCAGA
TTGTGCCAACCTTCAACAAACTGCGCGACGTCGAGAGGGCGTGGCCTGTC
CCGTGCGCGTTGCACGTTGACGGCTTTCCCACCGGACGGGCACGTGGCTA
TGTTACACTCTCGGGCGCGCCTGAACGCGTTTTGGTCTTACCCCGTTTTG
GTCGTTTTGCTTGCCCTTGCGTGCGCGTGTGGTGCAGGCGATCGCATCGG
TACGCGAAGAGTTTATCAAGCGAATGGGAAACTGATGAGCGGGCGACCTA
GCCTGCTGGTTTTGGACGCGGCGGGGAGCGGAGTGGAGCGCATGCGGATG
CTACCACACGCTACCGTGGTGGTTTGGCTGTTTGGGGGTGATGGCTATGC
AACCATTTTTGGGTTGTACAGTATTGGGCTAGACCGTGGGATCGGTGCCT
CAGATGAGCAATTCTAAACAGTTCATTCCCCTCTGACGGACGGGATCCTT
CAAGGATCACGATCACGGTTGGTCAATTGCACGGTGGCCTAGGCTTCGGG
TTATTTGCTTCCCCCGCAGAGTTTCACGCAGTTTGTATCCACGTAGTCGA
AACGGTAGTTTTGTCAGGTTAGAACCGAGAGGGGTTTGGATGGCAAAGCG
GTTGGTGACCTTTTTTGGACAGCCACGCATGCTGCATGACCACGCGTCGT
AACGTTTTCATCCGCCCAAGCGCCGTCCATCCGTCTAATCGCCACTCACT
CGTAATCCCCTCATCACCGGGCCAGCGTGTTGCGCCTTTGGTAGGTATGC
TGCATCTTGTGCGAGCTAGAGGTTGTTGTACGAGGGGTGGTGGGGTTGTT
CGTTTTAGGGTGTGGGTGGACAAGACACCAGGGGGAAAACTTGACTCGTA
ACCACGTACACAACTTGACAGAATGTAATGATCTCCAGGGTTCAACTCAA
CACTTCTCGGAACACAAAAACTTGAACCCCCCGCTGGTTTTCGTTTTCAC
CGTGACCCGTCGGGAACTTGGAGGTTTCATGTGGTGCCGCGACGTGAAAG
ACGCAAAGCTGCAAATGGCGATGGCATACATGCGCAGGGTTGTGTGCAGG
GATTTGCCAAGGGTGTTGGTATTTCGAGCGCCAAACCTGCTTGCTGCGTT
CCCCGCGTCCTGTTTCCGTGCGGCAGGCAAGCGTCTTGCTGTTGTCAAGC
CGTATCTACGCGTGT
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Coding sequence (CDS) from alignment at Scaffold_523:797533..801697-

>EsuBft225_15a-0001 ID=EsuBft225_15a-0001|Name=EsuBft225_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_523:797533..801697- (Ectocarpus subulatus male Bft15b)
ATGGCGTTGGAACTGCTCCCGCAAGTCAAGGCCATCCTCATCCTTGACGA
GGATGGTGGCCGCGTTTCTTGCAAGTACCACGACCGCAAGGAGTTCCCAA
ACCTCGGAGCGGAGGCGATGTTCGAGCACAAGCTCTTCAGAAAGACTAAG
AGCGTACATGCTCCCACGGAGGCGGACGTGGTTTTGCTTGACGACGTCGT
GGCGGTGTTCAGGAGCGGGCTCGACGTGCATCTCTATGTCGTTGGGTCTA
CGGATGAGAACGAGCTCATCCTCACAGCCGTGCTGGACGCTTTGCACGAG
ACCCTTCTCATCCTTCTTCGGGGACAGATCGACCGGCGAACTCTGCTGGA
CAACCTCGCCCTGGTGTTGCTGTCCATCGACGAGCTCGTGGACGCGGGAA
AGATTTTGGAGATCGACCCCTCGGCGATTGCGAACAGGGTGCTCATGCGC
GGGGCTGACGCGCGGGCCCCCCAGAATTCAGACGTGAACATCCCCCAGGC
GATCGCATCGGTACGCGAAGAGTTTATCAAGCGAATGGGAAACTGA
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