EsuBft225_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft225_12a-0001
Unique NameEsuBft225_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:840876..843675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft225_12
Protein domainsIPR001878
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length227
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft225_12aEsuBft225_12aEctocarpus subulatus male Bft15bgeneScaffold_523 840876..843675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_12a-0001EsuBft225_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 840876..842535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_12a-0001-exonagat-exon-54593Ectocarpus subulatus male Bft15bexonScaffold_523 840876..841169 +
EsuBft225_12a-0001-exonagat-exon-54592Ectocarpus subulatus male Bft15bexonScaffold_523 841277..841840 +
EsuBft225_12a-0001-exonEsuBft225_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 842186..842278 +
EsuBft225_12a-0001-exonagat-exon-54594Ectocarpus subulatus male Bft15bexonScaffold_523 842356..843675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_12a-0001-cdsEsuBft225_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 840876..841169 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_12a-0001-exonagat-three_prime_utr-9000Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 842536..843675 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft225_12a-0001 ID=EsuBft225_12a-0001|Name=EsuBft225_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2271bp|location=Sequence derived from alignment at Scaffold_523:840876..843675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGGTAGCGATGGTGCTGTTGAATGGGGCGAGACAGCGGTGGG
GTCAGGGAAGACTACGTCGTTTCGCGTAAGCGTCCCGCAGTTCAAGGGCG
AAAAGCACCAGTACCCCGGGTGGAACATGGACTTCAGTCGCTTCATCAAC
TACATGAACCTACCCGAGACTTTCTTCGGGAAAGGGACAATGCCAGATGT
AGCGCTGCCGCGACCCCAACTTCTGCAGGCAGGGTTCACCATGGACCAGA
TCAACAACGCCCTACACGGGTGGCAACTCCTTTCAAACGCGATGGTTTTT
CACCGGTTTGAGCGGTACCAGGTCGACGTGAAGGTAGACCCGAACGTGGC
ACTGCGTGAGTTGGAGAACATCCGCGACATGATCCAGGAATGCGGGGGCG
CCGCCCTCGATGACCGGTTCGTGTTCACACGCTTCGTGAATGCCCTTCCT
CAAGAGTACGAGGTCGCAAAAGTGAACCTCTCATCCGCTGAGAGGCTGAC
GAGGGGGAACCTCATGCGCGTGACGGGGACTCGCTACAACACGCTCTGCA
GCCAGCGGGAGGCGGAGAAAAGCCACACGAGGGCAGAGGAACAGGCTTTC
GTCACAGCCGACGGCGCCGGGAAGGGCGAAAGTCGCAACCGCGCCCGCCG
CAAGGGAAACAGCAACGGCAAAGGCAAAGGCAACGAGAGCGGTGGGGGCG
GGGCGGAGAAACGGGCACGCGTCCGGTGCTTCCGATGCGGAAAGATGGGG
CATCGGATCGCGGAATGCCCAACAAAGGAAACCGACATTGTCCGGTGCGA
GGTTTGCACGGGATTCGGCCACGAAAAAGACCGTTGCCCAATGGAAGAAG
AGAAAGCGGGGAGGGACGTACAGCAGTGGTTACACAACAGCGCGCCTCCA
GATGTAGGGGGGACAGCGCCAGCCGACGCACCCCAGACGTGGGGGGCAGT
ATTCTTCACCAGCGCGCCCCCAGATGTAGGGGGGGCGGCGCAGGTCAACG
CTCTCCAGATGCAGGGGAGGGCAGCAGTTCTTCACCGGCGCGTCCCCAGA
TGTAGGGGGGACGACGCGGGTCCACGCTCTCCAGATGTAGGGGAGGGCAA
CTTTTCTTCACCGGCGCGCCTCCAGATGTAGGGGGGGCAACGCCGGTTAA
TGCTCTCCAGATGTAGGGGAGGGCGGCATTTCTTCACCTGCGCGCCTCCA
GATGTATGGGGGGCAGCGTTGGGCTTTTCGGTTGGGCGGTTCTCCAGATG
AAGGGGGGGGGGCTGCACAGTCATCACAGATCTCTGCCAACGCGCTTCCA
GATGTAGGGGGGGCAGCGTGGGCATTTGTCGTTCTGGTCGGCGCGCTTAC
CAGGGTGGCGATCAGCTGCAGGGATTTTTGCGGGTGGGTGGGAGGAGCCG
GAGTCCACTTGGCAATGGAGAGAAGACCCCCGCTGAGACCGACAAATCCG
GTTGGTACCTGTAGCAGAGGATACTGGTAGCAATTTGAGTTTTCTTGCGT
GTGGTCGCACAATATGGGAGGGCATCCAATGTGGCGTCAACCTGATGTTC
GTAAACGTGCATGTCTCTGACGGCCTCCCCTCGACAGTCGCTACCGTGTT
TTGATCGTATCAACGTCGTTCCTTGTTGTTCGAATTGTAGGTCAGATGTC
GCGGGAGAGCACAGCTGTGTTTCAGCTAGCGTTGGTATATTGATAATTGT
TCTTTCCTGAAAATGTTGAGATGATCATTTGAACCATCGATGTAGTTTGG
TCAGCTTAGTATGTCGCCATGAAGGGGAATTGGAGTTGCTGAAATAAAAT
GCCAACGTAGCGCTGTGTTTGGCCTTCGTTTGTAGGGCGTTGGAGTAGTT
GAGATGACAACAATGATATTTTATTTTGGCAGTCGTGGAATCATTGCGAG
GGTTTTCGACTCGGAGGCCGGGTTTTCCCTTGCAACGGTGGTGTCCGAGT
ACGTTGAGCGACACACGGTGATGGTTAATTACTAGCGTAAGGAACCAGGG
AGGGTGTTCGTGCGTGTGCAGATGTAGGAAGGATCTGAGGAACGGTTCTG
TGTTCTGTGCATGAACGGACCCGCTGTGGTACCTGTTGTAGTAGACTTGG
ATGAGTCTGCGGTGCCCCCATGCTGCGTCAGCCTGTGTGGGGCACTCTTT
TTCTCCTCTGTCTGTCGTGCGTTTGTCCTGCGGATCTAATACAAGCAATC
AACGACACTTTCCAGTCACTGGACACAAATGCGGGCATACCCAGCAATCA
CTCCGGCTCTAGGAGTGGTCA
back to top

protein sequence of EsuBft225_12a-0001

>EsuBft225_12 ID=EsuBft225_12|Name=EsuBft225_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=376bp
MAAGSDGAVEWGETAVGSGKTTSFRVSVPQFKGEKHQYPGWNMDFSRFIN
YMNLPETFFGKGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMVF
HRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALP
QEYEVAKVNLSSAERLTRGNLMRVTGTRYNTLCSQREAEKSHTRAEEQAF
VTADGAGKGESRNRARRKGNSNGKGKGNESGGGGAEKRARVRCFRCGKMG
HRIAECPTKETDIVRCEVCTGFGHEKDRCPMEEEKAGRDVQQWLHNSAPP
DVGGTAPADAPQTWGAVFFTSAPPDVGGAAQVNALQMQGRAAVLHRRVPR
CRGDDAGPRSPDVGEGNFSSPARLQM
back to top

mRNA from alignment at Scaffold_523:840876..843675+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft225_12a-0001 ID=EsuBft225_12a-0001|Name=EsuBft225_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2800bp|location=Sequence derived from alignment at Scaffold_523:840876..843675+ (Ectocarpus subulatus male Bft15b)
ATGGCCGCCGGTAGCGATGGTGCTGTTGAATGGGGCGAGACAGCGGTGGG
GTCAGGGAAGACTACGTCGTTTCGCGTAAGCGTCCCGCAGTTCAAGGGCG
AAAAGCACCAGTACCCCGGGTGGAACATGGACTTCAGTCGCTTCATCAAC
TACATGAACCTACCCGAGACTTTCTTCGGGAAAGGGACAATGCCAGATGT
AGCGCTGCCGCGACCCCAACTTCTGCAGGCAGGGTTCACCATGGACCAGA
TCAACAACGCCCTACACGGGTGGCAACTCCTTTCAAACGCGATGGTACGT
GAGAATGACAAATCGCTTATCAGAAGGTGTAAGTCCCCCGAGAGGCCATG
GAAACGCTTGACGCCGTCTACAAACCCGAAACGCAGGGAGAAGCACAACA
GGTTTTTCACCGGTTTGAGCGGTACCAGGTCGACGTGAAGGTAGACCCGA
ACGTGGCACTGCGTGAGTTGGAGAACATCCGCGACATGATCCAGGAATGC
GGGGGCGCCGCCCTCGATGACCGGTTCGTGTTCACACGCTTCGTGAATGC
CCTTCCTCAAGAGTACGAGGTCGCAAAAGTGAACCTCTCATCCGCTGAGA
GGCTGACGAGGGGGAACCTCATGCGCGTGACGGGGACTCGCTACAACACG
CTCTGCAGCCAGCGGGAGGCGGAGAAAAGCCACACGAGGGCAGAGGAACA
GGCTTTCGTCACAGCCGACGGCGCCGGGAAGGGCGAAAGTCGCAACCGCG
CCCGCCGCAAGGGAAACAGCAACGGCAAAGGCAAAGGCAACGAGAGCGGT
GGGGGCGGGGCGGAGAAACGGGCACGCGTCCGGTGCTTCCGATGCGGAAA
GATGGGGCATCGGATCGCGGAATGCCCAACAAAGGAAACCGACATTGTCC
GGTGCGAGGTTTGCACGGGATTCGGCCACGAAAAAGACCGTTGCCCAATG
GAAGAAGAGAAAGCGGTAATAGCGGTCAAAATGTCGCAGGATGAGCTAGA
CGTTGTGTGCGAAGCCTTGAAAGATAGGAAACCCACTATACCCAGCCCCA
ACACTCCACGCCCCCAGATGTAGGGGGGGCGACTTGAGTTCTTGAAACCT
GTGCTTTCCAGATGTAGGGGAAGGCACTGACACTGACACGCACTCCCAGA
TGTAGGGGGGGTAGTGAAACATTTCGTAGGCGTGCTCTCCAGATGTAGGG
GAGGGTACCAACACGCACCCCCAGATGTGGGGGGGGTAGCGCATATATCT
CACAGGTGTTCTCCCCAAAAAAAAGGGAGGAGGGCATCAGTAAACGCCCT
CCAGATGTAGGGGAGGGACGTACAGCAGTGGTTACACAACAGCGCGCCTC
CAGATGTAGGGGGGACAGCGCCAGCCGACGCACCCCAGACGTGGGGGGCA
GTAGTTCCTTACCCGTGCACCTCCATATGTAGAGAGGGCAGCACGGGTCA
ACGCTCGCCAGATGTAAGGGAGGGCAGCAGTTCTTCACCAGCGCGCCCCC
AGATGTAGGGGGGGCGGCGCAGGTCAACGCTCTCCAGATGCAGGGGAGGG
CAGCAGTTCTTCACCGGCGCGTCCCCAGATGTAGGGGGGACGACGCGGGT
CCACGCTCTCCAGATGTAGGGGAGGGCAACTTTTCTTCACCGGCGCGCCT
CCAGATGTAGGGGGGGCAACGCCGGTTAATGCTCTCCAGATGTAGGGGAG
GGCGGCATTTCTTCACCTGCGCGCCTCCAGATGTATGGGGGGCAGCGTTG
GGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGGGGGGGGGCTGCACAGT
CATCACAGATCTCTGCCAACGCGCTTCCAGATGTAGGGGGGGCAGCGTGG
GCATTTGTCGTTCTGGTCGGCGCGCTTACCAGGGTGGCGATCAGCTGCAG
GGATTTTTGCGGGTGGGTGGGAGGAGCCGGAGTCCACTTGGCAATGGAGA
GAAGACCCCCGCTGAGACCGACAAATCCGGTTGGTACCTGTAGCAGAGGA
TACTGGTAGCAATTTGAGTTTTCTTGCGTGTGGTCGCACAATATGGGAGG
GCATCCAATGTGGCGTCAACCTGATGTTCGTAAACGTGCATGTCTCTGAC
GGCCTCCCCTCGACAGTCGCTACCGTGTTTTGATCGTATCAACGTCGTTC
CTTGTTGTTCGAATTGTAGGTCAGATGTCGCGGGAGAGCACAGCTGTGTT
TCAGCTAGCGTTGGTATATTGATAATTGTTCTTTCCTGAAAATGTTGAGA
TGATCATTTGAACCATCGATGTAGTTTGGTCAGCTTAGTATGTCGCCATG
AAGGGGAATTGGAGTTGCTGAAATAAAATGCCAACGTAGCGCTGTGTTTG
GCCTTCGTTTGTAGGGCGTTGGAGTAGTTGAGATGACAACAATGATATTT
TATTTTGGCAGTCGTGGAATCATTGCGAGGGTTTTCGACTCGGAGGCCGG
GTTTTCCCTTGCAACGGTGGTGTCCGAGTACGTTGAGCGACACACGGTGA
TGGTTAATTACTAGCGTAAGGAACCAGGGAGGGTGTTCGTGCGTGTGCAG
ATGTAGGAAGGATCTGAGGAACGGTTCTGTGTTCTGTGCATGAACGGACC
CGCTGTGGTACCTGTTGTAGTAGACTTGGATGAGTCTGCGGTGCCCCCAT
GCTGCGTCAGCCTGTGTGGGGCACTCTTTTTCTCCTCTGTCTGTCGTGCG
TTTGTCCTGCGGATCTAATACAAGCAATCAACGACACTTTCCAGTCACTG
GACACAAATGCGGGCATACCCAGCAATCACTCCGGCTCTAGGAGTGGTCA
back to top

Coding sequence (CDS) from alignment at Scaffold_523:840876..843675+

>EsuBft225_12a-0001 ID=EsuBft225_12a-0001|Name=EsuBft225_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1131bp|location=Sequence derived from alignment at Scaffold_523:840876..843675+ (Ectocarpus subulatus male Bft15b)
ATGGCCGCCGGTAGCGATGGTGCTGTTGAATGGGGCGAGACAGCGGTGGG
GTCAGGGAAGACTACGTCGTTTCGCGTAAGCGTCCCGCAGTTCAAGGGCG
AAAAGCACCAGTACCCCGGGTGGAACATGGACTTCAGTCGCTTCATCAAC
TACATGAACCTACCCGAGACTTTCTTCGGGAAAGGGACAATGCCAGATGT
AGCGCTGCCGCGACCCCAACTTCTGCAGGCAGGGTTCACCATGGACCAGA
TCAACAACGCCCTACACGGGTGGCAACTCCTTTCAAACGCGATGGTTTTT
CACCGGTTTGAGCGGTACCAGGTCGACGTGAAGGTAGACCCGAACGTGGC
ACTGCGTGAGTTGGAGAACATCCGCGACATGATCCAGGAATGCGGGGGCG
CCGCCCTCGATGACCGGTTCGTGTTCACACGCTTCGTGAATGCCCTTCCT
CAAGAGTACGAGGTCGCAAAAGTGAACCTCTCATCCGCTGAGAGGCTGAC
GAGGGGGAACCTCATGCGCGTGACGGGGACTCGCTACAACACGCTCTGCA
GCCAGCGGGAGGCGGAGAAAAGCCACACGAGGGCAGAGGAACAGGCTTTC
GTCACAGCCGACGGCGCCGGGAAGGGCGAAAGTCGCAACCGCGCCCGCCG
CAAGGGAAACAGCAACGGCAAAGGCAAAGGCAACGAGAGCGGTGGGGGCG
GGGCGGAGAAACGGGCACGCGTCCGGTGCTTCCGATGCGGAAAGATGGGG
CATCGGATCGCGGAATGCCCAACAAAGGAAACCGACATTGTCCGGTGCGA
GGTTTGCACGGGATTCGGCCACGAAAAAGACCGTTGCCCAATGGAAGAAG
AGAAAGCGGGGAGGGACGTACAGCAGTGGTTACACAACAGCGCGCCTCCA
GATGTAGGGGGGACAGCGCCAGCCGACGCACCCCAGACGTGGGGGGCAGT
ATTCTTCACCAGCGCGCCCCCAGATGTAGGGGGGGCGGCGCAGGTCAACG
CTCTCCAGATGCAGGGGAGGGCAGCAGTTCTTCACCGGCGCGTCCCCAGA
TGTAGGGGGGACGACGCGGGTCCACGCTCTCCAGATGTAGGGGAGGGCAA
CTTTTCTTCACCGGCGCGCCTCCAGATGTAG
back to top