EsuBft2254_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2254_7a-0001
Unique Name	EsuBft2254_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_287	contig	Scaffold_287:116721..118416 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2254_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	169
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2254_7a	EsuBft2254_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_287 116721..118416 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2254_7a-0001-exon	EsuBft2254_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_287 116721..118416 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2254_7a-0001-exon	agat-three_prime_utr-8986	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_287 116721..118257 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2254_7a-0001-cds	EsuBft2254_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_287 118258..118416 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2254_7a-0001	EsuBft2254_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_287 118258..118416 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_287:116721..118416-
coding sequence from alignment at Scaffold_287:116721..118416-

spliced messenger RNA

>EsuBft2254_7a-0001 ID=EsuBft2254_7a-0001|Name=EsuBft2254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1696bp|location=Sequence derived from alignment at Scaffold_287:116721..118416- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAGTAGAAGACTTTAAAGCTGAAGTCCGCCAAGGTTTCAGTAAA
AAAATCACTCATCCCACCAGCTTGGAGATACGAAAAACGAAGACCATCAG
GCCCCGGAGCACTCTGAGGGTTGGCTTTCTTTACCGTCTGCTTGATGAAC
TTGATTTCGAATGGTTCATCAGCTTCGGCGACGGAGTCGATCTTGTGCGT
TTTTATACGATCTCCCGCAGCTTTGATGCTGGAATCCCACGCAGTAGCAA
TATCGTCAGGATCTTCGTTAGGGTGTAGGTTGCGAAGATGCTCCAGCGTG
TCGTTGTTGCGCGGTGAAGGTGCTGGGGAGATTAAGGCACTGGCAGCTTT
AGTGATGCCTCCGCTTTCGTGCGCAAGTCTTGTGGCTTTTCTTTGGCGAT
TGTCTTCAGTATCCGCATAATACTGAAGTCGACGATTCTTCTCGTACATC
ATGAGCCAGGCGATAGGTTCACTCAGATCACCATTTGCAAAGCGGTTAAA
TCGGGATACCCTGTTCATCCTTCCATCAGTCGATCCATGCAATGCTGGGG
TAAGATGAAGCAACTTTGTTGCTCGGACAAGTTGGAGTTGTCTTTCAACA
CGTGCTACTTCATATCTTTCCGCTGCAAGAGGAGACAGATCTGAGGTATC
TGACTTCTGCTGATCTATGTGTACAGCTCCAAGTGCTTGCACGAAGAGGA
TGACGACATGTTGGAAGTGTTTGCAAAATACTTTCGCCAGTTGCGGATCG
ATGTGTTTGACTGTCGAAAAAATTGACGTTTCAAGAGTATCTTGTCGAAC
CTGATCCAGGGCACTGCTGACGTCGTCGAGGTCCCACGGTAATAGGAGTT
GCCGCCTGTCGTCATCATCCTCTTGCGGTGGCTGCAACGACCCAGAGAGA
GATGGAGACGATGTAGTACCTGGTTCGCAACAATGCTTGGTGCGTGGAGA
GAAAAGGTCGCCGCATGTGCCACATGCGGCGTAACCAGGTGCCTGGCTGC
TCGAGCGCAAGGATCCAGGAGGATACAAACTGAGTAGCTCTTTTCCTCGA
CCTTTATGCTGATGTTTTTGGTGTGTAGCCAGATTCCTCGCCGTCAGGTT
CGTTGATCCTTCGCTGATGCAGAGGGGACATGAATACCGTACTTCCGTTG
GGCATCGTGGCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CTCCACACATGCCCTCGCCCGAACCTAGGAAGCCACTGATGCAAAGAGCG
GAGGACAGCAAAAATGGGCTATTCCAAGCCCAGCCGAAGCCAGGATATCG
TGGTATGCTGCATCTCCCAATTTGATAATCGTACACTCCCAAGATCCAAC
AGTCATCGTGTCAGCAGCTAGATTACTCAAACAAAATAGCAACACA

protein sequence of EsuBft2254_7a-0001

>EsuBft2254_7 ID=EsuBft2254_7|Name=EsuBft2254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MFAIPPLYWRQKLPLMMRRKTPPTAIGRFFSPSAERLALVWRFQKKSGSS
SP

mRNA from alignment at Scaffold_287:116721..118416-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2254_7a-0001 ID=EsuBft2254_7a-0001|Name=EsuBft2254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1696bp|location=Sequence derived from alignment at Scaffold_287:116721..118416- (Ectocarpus subulatus male Bft15b)
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAGTAGAAGACTTTAAAGCTGAAGTCCGCCAAGGTTTCAGTAAA
AAAATCACTCATCCCACCAGCTTGGAGATACGAAAAACGAAGACCATCAG
GCCCCGGAGCACTCTGAGGGTTGGCTTTCTTTACCGTCTGCTTGATGAAC
TTGATTTCGAATGGTTCATCAGCTTCGGCGACGGAGTCGATCTTGTGCGT
TTTTATACGATCTCCCGCAGCTTTGATGCTGGAATCCCACGCAGTAGCAA
TATCGTCAGGATCTTCGTTAGGGTGTAGGTTGCGAAGATGCTCCAGCGTG
TCGTTGTTGCGCGGTGAAGGTGCTGGGGAGATTAAGGCACTGGCAGCTTT
AGTGATGCCTCCGCTTTCGTGCGCAAGTCTTGTGGCTTTTCTTTGGCGAT
TGTCTTCAGTATCCGCATAATACTGAAGTCGACGATTCTTCTCGTACATC
ATGAGCCAGGCGATAGGTTCACTCAGATCACCATTTGCAAAGCGGTTAAA
TCGGGATACCCTGTTCATCCTTCCATCAGTCGATCCATGCAATGCTGGGG
TAAGATGAAGCAACTTTGTTGCTCGGACAAGTTGGAGTTGTCTTTCAACA
CGTGCTACTTCATATCTTTCCGCTGCAAGAGGAGACAGATCTGAGGTATC
TGACTTCTGCTGATCTATGTGTACAGCTCCAAGTGCTTGCACGAAGAGGA
TGACGACATGTTGGAAGTGTTTGCAAAATACTTTCGCCAGTTGCGGATCG
ATGTGTTTGACTGTCGAAAAAATTGACGTTTCAAGAGTATCTTGTCGAAC
CTGATCCAGGGCACTGCTGACGTCGTCGAGGTCCCACGGTAATAGGAGTT
GCCGCCTGTCGTCATCATCCTCTTGCGGTGGCTGCAACGACCCAGAGAGA
GATGGAGACGATGTAGTACCTGGTTCGCAACAATGCTTGGTGCGTGGAGA
GAAAAGGTCGCCGCATGTGCCACATGCGGCGTAACCAGGTGCCTGGCTGC
TCGAGCGCAAGGATCCAGGAGGATACAAACTGAGTAGCTCTTTTCCTCGA
CCTTTATGCTGATGTTTTTGGTGTGTAGCCAGATTCCTCGCCGTCAGGTT
CGTTGATCCTTCGCTGATGCAGAGGGGACATGAATACCGTACTTCCGTTG
GGCATCGTGGCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CTCCACACATGCCCTCGCCCGAACCTAGGAAGCCACTGATGCAAAGAGCG
GAGGACAGCAAAAATGGGCTATTCCAAGCCCAGCCGAAGCCAGGATATCG
TGGTATGCTGCATCTCCCAATTTGATAATCGTACACTCCCAAGATCCAAC
AGTCATCGTGTCAGCAGCTAGATTACTCAAACAAAATAGCAACACA

Coding sequence (CDS) from alignment at Scaffold_287:116721..118416-

>EsuBft2254_7a-0001 ID=EsuBft2254_7a-0001|Name=EsuBft2254_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_287:116721..118416- (Ectocarpus subulatus male Bft15b)
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAG