EsuBft2254_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2254_6a-0001
Unique NameEsuBft2254_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:104979..106219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2254_6
Protein domainsPTHR32134
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon3
Length906
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_6aEsuBft2254_6aEctocarpus subulatus male Bft15bgeneScaffold_287 104979..106219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_6a-0001-exonagat-exon-2498Ectocarpus subulatus male Bft15bexonScaffold_287 104979..105021 +
EsuBft2254_6a-0001-exonEsuBft2254_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 105296..105441 +
EsuBft2254_6a-0001-exonagat-exon-2499Ectocarpus subulatus male Bft15bexonScaffold_287 105503..106219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_6a-0001-cdsEsuBft2254_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 104979..105021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_6a-0001EsuBft2254_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 104979..106219 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2254_6a-0001 ID=EsuBft2254_6a-0001|Name=EsuBft2254_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=906bp|location=Sequence derived from alignment at Scaffold_287:104979..106219+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCTGTTGGTCATGAGTCTTTTAGCGGCCAACCAAATGGACGAGG
CGAATGCGTGGACGCCTTCATCGTCGCCTTGAATCGGACATGCGATGGAG
GAGAACAGCGTTGGTATGCGTCTACGCTGGAGCTACAGCCCGTGTCGCTG
GAGTTTTGTGTGGCGTGCAGACGTGTGCCGACCTCGCACTCAACAAGCAC
CGTCGGGAGGTTGGTGTCTGGAGTCAGTCGTGCTCCAGTCGTGCGGGCTT
ATAGTTTGACGTGGGCACTTTCAATGGACGTCCTGCTGCAGAGTTGTGCC
ATGGAGCTGCAGCGAGGGTCAAAATATCGGCGGAGTGGGGGACATTCATC
TGCAGCAAACCTAGCATCGATGTTGTGGCTTCAAAGGCTCAAACGGCTGG
TATTGGAATTGGATACGCCCGTGATCACGGCGTCGTGGCCGGCCTCCCTG
CAGCAGCTATCGTTCGGATATAAATTCAACAAGCCCATCGCCGACGTCGT
GTGGCCGGCCTCCCTGCAGCACCTATCGTTTGGACTTCGGTTCAACCAAC
CCATCGCCAACATCGTGTGGCCGGCCTCCCTGCAGCACCTATCGTTCGGA
TATACATTCAACCAGCCCATCGCCGAAGCCGTGTGGCCGGCCTCACTGCA
GGTGCTATCGTTTGGAAATCGGTTCAACCAGCCCATCACGACTGTTGTGT
GGCCGGCCTCCCTGCAGCAGGTTTCATTAGGACGTATGCTTGTATCTATC
GTTCAAGGTGCCAGTACCATCCAGTGGGGGTGTTGTCACCGCAGAGAAAC
ACCCTGTAAAGGCTTCTTACAAGCAAACTCTCAGCCGTTCAGGTGGCGTC
TGTTTGCGGCCTACGCCACTTATTTATCGGGTGAGACTGTTTTGGTGATG
TATTAA
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protein sequence of EsuBft2254_6a-0001

>EsuBft2254_6 ID=EsuBft2254_6|Name=EsuBft2254_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=301bp
MFSVGHESFSGQPNGRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSL
EFCVACRRVPTSHSTSTVGRLVSGVSRAPVVRAYSLTWALSMDVLLQSCA
MELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASL
QQLSFGYKFNKPIADVVWPASLQHLSFGLRFNQPIANIVWPASLQHLSFG
YTFNQPIAEAVWPASLQVLSFGNRFNQPITTVVWPASLQQVSLGRMLVSI
VQGASTIQWGCCHRRETPCKGFLQANSQPFRWRLFAAYATYLSGETVLVM
Y
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mRNA from alignment at Scaffold_287:104979..106219+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2254_6a-0001 ID=EsuBft2254_6a-0001|Name=EsuBft2254_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1241bp|location=Sequence derived from alignment at Scaffold_287:104979..106219+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCTGTTGGTCATGAGTCTTTTAGCGGCCAACCAAATGGTACGTT
TGTCCCCGACACAACCAGTATTCGCAGCAGGGGTGTCGAAGATGAACACA
ATACATGGACAGGTGATCGATCACGGGACACCGCTGTGTTTGTTCACCAA
GCGCTGCTGTTGGCAGTTCATTGTGGACCGTGATCTTGTTCCGATCGACT
TACCTTCTTCCCCATCTCCGAAATCAAGTATCCGCCCATCAACAAACTGT
CCCCAAGACCCACAACTCGTCTTTGTTGACGTGCCTACTTGTGTGTACTT
GCCATCTACAATCTCAGGACGAGGCGAATGCGTGGACGCCTTCATCGTCG
CCTTGAATCGGACATGCGATGGAGGAGAACAGCGTTGGTATGCGTCTACG
CTGGAGCTACAGCCCGTGTCGCTGGAGTTTTGTGTGGCGTGCAGACGTGT
GCCGACCTCGCACGTGCGTGCCAATCGACAAACACCTCGTAGCTTGTGGT
CTCCTCGCATCTTCCACACCACAGTCAACAAGCACCGTCGGGAGGTTGGT
GTCTGGAGTCAGTCGTGCTCCAGTCGTGCGGGCTTATAGTTTGACGTGGG
CACTTTCAATGGACGTCCTGCTGCAGAGTTGTGCCATGGAGCTGCAGCGA
GGGTCAAAATATCGGCGGAGTGGGGGACATTCATCTGCAGCAAACCTAGC
ATCGATGTTGTGGCTTCAAAGGCTCAAACGGCTGGTATTGGAATTGGATA
CGCCCGTGATCACGGCGTCGTGGCCGGCCTCCCTGCAGCAGCTATCGTTC
GGATATAAATTCAACAAGCCCATCGCCGACGTCGTGTGGCCGGCCTCCCT
GCAGCACCTATCGTTTGGACTTCGGTTCAACCAACCCATCGCCAACATCG
TGTGGCCGGCCTCCCTGCAGCACCTATCGTTCGGATATACATTCAACCAG
CCCATCGCCGAAGCCGTGTGGCCGGCCTCACTGCAGGTGCTATCGTTTGG
AAATCGGTTCAACCAGCCCATCACGACTGTTGTGTGGCCGGCCTCCCTGC
AGCAGGTTTCATTAGGACGTATGCTTGTATCTATCGTTCAAGGTGCCAGT
ACCATCCAGTGGGGGTGTTGTCACCGCAGAGAAACACCCTGTAAAGGCTT
CTTACAAGCAAACTCTCAGCCGTTCAGGTGGCGTCTGTTTGCGGCCTACG
CCACTTATTTATCGGGTGAGACTGTTTTGGTGATGTATTAA
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Coding sequence (CDS) from alignment at Scaffold_287:104979..106219+

>EsuBft2254_6a-0001 ID=EsuBft2254_6a-0001|Name=EsuBft2254_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=906bp|location=Sequence derived from alignment at Scaffold_287:104979..106219+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCTGTTGGTCATGAGTCTTTTAGCGGCCAACCAAATGGACGAGG
CGAATGCGTGGACGCCTTCATCGTCGCCTTGAATCGGACATGCGATGGAG
GAGAACAGCGTTGGTATGCGTCTACGCTGGAGCTACAGCCCGTGTCGCTG
GAGTTTTGTGTGGCGTGCAGACGTGTGCCGACCTCGCACTCAACAAGCAC
CGTCGGGAGGTTGGTGTCTGGAGTCAGTCGTGCTCCAGTCGTGCGGGCTT
ATAGTTTGACGTGGGCACTTTCAATGGACGTCCTGCTGCAGAGTTGTGCC
ATGGAGCTGCAGCGAGGGTCAAAATATCGGCGGAGTGGGGGACATTCATC
TGCAGCAAACCTAGCATCGATGTTGTGGCTTCAAAGGCTCAAACGGCTGG
TATTGGAATTGGATACGCCCGTGATCACGGCGTCGTGGCCGGCCTCCCTG
CAGCAGCTATCGTTCGGATATAAATTCAACAAGCCCATCGCCGACGTCGT
GTGGCCGGCCTCCCTGCAGCACCTATCGTTTGGACTTCGGTTCAACCAAC
CCATCGCCAACATCGTGTGGCCGGCCTCCCTGCAGCACCTATCGTTCGGA
TATACATTCAACCAGCCCATCGCCGAAGCCGTGTGGCCGGCCTCACTGCA
GGTGCTATCGTTTGGAAATCGGTTCAACCAGCCCATCACGACTGTTGTGT
GGCCGGCCTCCCTGCAGCAGGTTTCATTAGGACGTATGCTTGTATCTATC
GTTCAAGGTGCCAGTACCATCCAGTGGGGGTGTTGTCACCGCAGAGAAAC
ACCCTGTAAAGGCTTCTTACAAGCAAACTCTCAGCCGTTCAGGTGGCGTC
TGTTTGCGGCCTACGCCACTTATTTATCGGGTGAGACTGTTTTGGTGATG
TATTAA
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