EsuBft2254_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2254_5a-0001
Unique NameEsuBft2254_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:92713..94844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft2254_5
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length2132
Hectar predicted targeting categoryother localisation
Evalue8e-157
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5aEsuBft2254_5aEctocarpus subulatus male Bft15bgeneScaffold_287 92713..94844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5a-0001-exonEsuBft2254_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 92713..94844 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5a-0001-exonagat-three_prime_utr-8985Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 92713..92812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5a-0001-cdsEsuBft2254_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 92813..94270 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5a-0001-exonagat-five_prime_utr-5791Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_287 94271..94844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_5a-0001EsuBft2254_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 92813..94270 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2254_5a-0001 ID=EsuBft2254_5a-0001|Name=EsuBft2254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2132bp|location=Sequence derived from alignment at Scaffold_287:92713..94844- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGT
GTTATGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGGAGGAAC
ATTGCATTAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAGGAGGTGCGCA
GACCACGTAATCACGGTACGGAGAATCATCCAAGGTAGAAAGAGGGCGGG
AAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCG
TATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGG
AAAACGTGGAGAGTGCTGAAGCAGATGACAGAGTGTACGAAAAGCGCGGT
CATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCC
CACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGAT
CTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACAC
GGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGT
CGTACACCCCTGAGGGACTGCAAATGCAATTTGACGCGGCGAAGAAGTTT
ACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGT
ATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGA
TCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATC
GCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGG
CAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCG
ATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTA
GAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACT
CGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGC
GCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGG
TCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGAT
GGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAACA
AAAAGAGGGGTAGACAACCCACGGGATGGGTCAAGGTTGTAGATGACGTA
TGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCT
ACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAAC
AGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGA
ATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGA
TGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTC
GAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTC
AAATGCGATTGTGGCTTCGAATGCGAAGACCGTGTTCATGTTGTCGCGGA
ATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAA
AAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGACTAGAGAGGAG
TGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGACGGGAAG
GGATATCGTTAGGATAATCACTAGGGAAGACATTTTTGAGCCACCTTTGG
CAAAGTTGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAA
CGCTCCGTCCTCTCGAGGATGCGTGGTCAATGGTCTAACCGCTAAGGCAT
GCAAAACATAAGAGTACGCCCCCCCCCCCGGA
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protein sequence of EsuBft2254_5a-0001

>EsuBft2254_5 ID=EsuBft2254_5|Name=EsuBft2254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=485bp
MTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAV
RKGVKVGDTETSVSGMLFADDFVGMSYTPEGLQMQFDAAKKFTDKWRLSA
NVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNA
HMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPPLEYAGEVWE
GNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKL
TWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTGWVKVVDDVWKGLDIDE
DETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGF
KDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFEC
EDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWTREEWTVAVLGH
RRWVEKTGRDIVRIITREDIFEPPLAKLKGTIGHR
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mRNA from alignment at Scaffold_287:92713..94844-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2254_5a-0001 ID=EsuBft2254_5a-0001|Name=EsuBft2254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2132bp|location=Sequence derived from alignment at Scaffold_287:92713..94844- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGT
GTTATGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGGAGGAAC
ATTGCATTAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAGGAGGTGCGCA
GACCACGTAATCACGGTACGGAGAATCATCCAAGGTAGAAAGAGGGCGGG
AAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCG
TATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGG
AAAACGTGGAGAGTGCTGAAGCAGATGACAGAGTGTACGAAAAGCGCGGT
CATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCC
CACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGAT
CTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACAC
GGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGT
CGTACACCCCTGAGGGACTGCAAATGCAATTTGACGCGGCGAAGAAGTTT
ACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGT
ATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGA
TCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATC
GCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGG
CAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCG
ATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTA
GAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACT
CGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGC
GCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGG
TCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGAT
GGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAACA
AAAAGAGGGGTAGACAACCCACGGGATGGGTCAAGGTTGTAGATGACGTA
TGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCT
ACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAAC
AGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGA
ATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGA
TGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTC
GAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTC
AAATGCGATTGTGGCTTCGAATGCGAAGACCGTGTTCATGTTGTCGCGGA
ATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAA
AAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGACTAGAGAGGAG
TGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGACGGGAAG
GGATATCGTTAGGATAATCACTAGGGAAGACATTTTTGAGCCACCTTTGG
CAAAGTTGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAA
CGCTCCGTCCTCTCGAGGATGCGTGGTCAATGGTCTAACCGCTAAGGCAT
GCAAAACATAAGAGTACGCCCCCCCCCCCGGA
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Coding sequence (CDS) from alignment at Scaffold_287:92713..94844-

>EsuBft2254_5a-0001 ID=EsuBft2254_5a-0001|Name=EsuBft2254_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1458bp|location=Sequence derived from alignment at Scaffold_287:92713..94844- (Ectocarpus subulatus male Bft15b)
ATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAA
ATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAA
CATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTC
CGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCT
GTTTGCGGATGATTTTGTCGGTATGTCGTACACCCCTGAGGGACTGCAAA
TGCAATTTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCC
AACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACC
AGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACC
AGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCA
CACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCA
CCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTT
TGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAA
GGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGC
GAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGG
CAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTG
ACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAAT
TGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGG
GATGGGTCAAGGTTGTAGATGACGTATGGAAGGGGCTCGACATCGACGAA
GATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATC
TGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGG
ATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTC
AAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAA
ATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGA
CGGTAGACGAGGAAGACGACGAGTTCAAATGCGATTGTGGCTTCGAATGC
GAAGACCGTGTTCATGTTGTCGCGGAATGTCCGTTGTACAAGAAGGAGAG
GGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGGACGTACAGGGAGA
TGTTTGAGGCATGGACTAGAGAGGAGTGGACGGTAGCTGTACTGGGGCAT
AGGAGGTGGGTTGAAAAGACGGGAAGGGATATCGTTAGGATAATCACTAG
GGAAGACATTTTTGAGCCACCTTTGGCAAAGTTGAAAGGAACGATTGGCC
ATCGGTGA
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