EsuBft2254_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2254_4a-0001
Unique NameEsuBft2254_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:89482..90565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2254_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length97
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_4aEsuBft2254_4aEctocarpus subulatus male Bft15bgeneScaffold_287 89482..90565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_4a-0001-exonagat-exon-2497Ectocarpus subulatus male Bft15bexonScaffold_287 89482..89696 -
EsuBft2254_4a-0001-exonEsuBft2254_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 89811..90565 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_4a-0001-exonagat-three_prime_utr-8983Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 89482..89696 -
EsuBft2254_4a-0001-exonagat-three_prime_utr-8984Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 89811..90382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_4a-0001-cdsEsuBft2254_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 90383..90565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2254_4a-0001EsuBft2254_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 90383..90565 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2254_4a-0001 ID=EsuBft2254_4a-0001|Name=EsuBft2254_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=970bp|location=Sequence derived from alignment at Scaffold_287:89482..90565- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCTCTAGGCATGTGTGGCTCGACACATACCACGCAGTTTCCTC
AATCAAGTCTCCTTCTGTCATCGGTCTCTGCGACACGCGCAATGCAACGA
GCAGCAAGCACAACATGCAGCACGTTGGCGGCAAGTTCAAAAACGTGTAC
ACTCCTGAAGAATTTACGCATAACTCAGACTGAGGGTCTATCACAACACG
CACGCACGCGGTACGCCTTGCTCGTGTACGGAGCGACAACAACTATGTAG
TCTCAATAATGTTCAGCCAATTCTCAGCGTACGATGTTTCCTGCCTCAAT
TCACGTTCAAGCAACTCAGTCAAGCACAGCGTGGGGCCGTGTAAAGCTCA
TTCGTGAAACAAGTATCAGGACATCCTGCAAGGAACAAATTGTGCTTGTG
TACAAGGAATGTCGACACACAACTGGCAAACCTGTAGCCGGGGTGTGTGA
GGCCTCGGACGGACACCCAGGATTTCTGTCAAAACAAGAACAGACCTGTT
GCTATACTTATGCGGTCGCCTACCCAAACGCCGACGAGGGATATCCACCT
GCGTGTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCCCTCTCCTTCCCCCTCTCCCTCTCCCTCTCCTTCTCCCCCTCT
CTCTTTCTCTCTACCATACGTGTGCCCTCTGTGCCAATGTGCTAACTCCG
AGCAACACCCGAAACGGCAATACACTAAGAACAGCTCCCTCGCCGGGCCC
CCCAGAACCCCTCGCATTGAAGGAGGCCAACATCTCCTGTGTGGACTGCC
TTCCTCCTGTGTTTGTGTGATCCAGGCTGGTGCGTCCAGGAATTTGTACC
TAGAAAGGTGTAAAAGACCCACGTTCAGAGTAATGGGATGGCAAACAAAC
AACAACAAATGTTGGTTTTCATTCACATTATGCAACAGCGGTCGCCGCGA
TTGCTTCTGGCGCGACGTCC
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protein sequence of EsuBft2254_4a-0001

>EsuBft2254_4 ID=EsuBft2254_4|Name=EsuBft2254_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MSVSRHVWLDTYHAVSSIKSPSVIGLCDTRNATSSKHNMQHVGGKFKNVY
TPEEFTHNSD
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mRNA from alignment at Scaffold_287:89482..90565-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2254_4a-0001 ID=EsuBft2254_4a-0001|Name=EsuBft2254_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1084bp|location=Sequence derived from alignment at Scaffold_287:89482..90565- (Ectocarpus subulatus male Bft15b)
ATGTCTGTCTCTAGGCATGTGTGGCTCGACACATACCACGCAGTTTCCTC
AATCAAGTCTCCTTCTGTCATCGGTCTCTGCGACACGCGCAATGCAACGA
GCAGCAAGCACAACATGCAGCACGTTGGCGGCAAGTTCAAAAACGTGTAC
ACTCCTGAAGAATTTACGCATAACTCAGACTGAGGGTCTATCACAACACG
CACGCACGCGGTACGCCTTGCTCGTGTACGGAGCGACAACAACTATGTAG
TCTCAATAATGTTCAGCCAATTCTCAGCGTACGATGTTTCCTGCCTCAAT
TCACGTTCAAGCAACTCAGTCAAGCACAGCGTGGGGCCGTGTAAAGCTCA
TTCGTGAAACAAGTATCAGGACATCCTGCAAGGAACAAATTGTGCTTGTG
TACAAGGAATGTCGACACACAACTGGCAAACCTGTAGCCGGGGTGTGTGA
GGCCTCGGACGGACACCCAGGATTTCTGTCAAAACAAGAACAGACCTGTT
GCTATACTTATGCGGTCGCCTACCCAAACGCCGACGAGGGATATCCACCT
GCGTGTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCCCTCTCCTTCCCCCTCTCCCTCTCCCTCTCCTTCTCCCCCTCT
CTCTTTCTCTCTACCATACGTGTGCCCTCTGTGCCAATGTGCTAACTCCG
AGCAACACCCGAAACGGCAATACACTAAGAACAGCTCCCTCGCCGGGCCC
CCCAGGTACGAATCCGTTAGAAAGTCGAAAATGATTCGGCGCAAATCCTT
GTGGTAAGGACATAGCAACCATCAAATGCTCGGCGGAGTCTGTTCACCAT
GCCGTGATGACGGGAGTAGAACCCCTCGCATTGAAGGAGGCCAACATCTC
CTGTGTGGACTGCCTTCCTCCTGTGTTTGTGTGATCCAGGCTGGTGCGTC
CAGGAATTTGTACCTAGAAAGGTGTAAAAGACCCACGTTCAGAGTAATGG
GATGGCAAACAAACAACAACAAATGTTGGTTTTCATTCACATTATGCAAC
AGCGGTCGCCGCGATTGCTTCTGGCGCGACGTCC
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Coding sequence (CDS) from alignment at Scaffold_287:89482..90565-

>EsuBft2254_4a-0001 ID=EsuBft2254_4a-0001|Name=EsuBft2254_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_287:89482..90565- (Ectocarpus subulatus male Bft15b)
ATGTCTGTCTCTAGGCATGTGTGGCTCGACACATACCACGCAGTTTCCTC
AATCAAGTCTCCTTCTGTCATCGGTCTCTGCGACACGCGCAATGCAACGA
GCAGCAAGCACAACATGCAGCACGTTGGCGGCAAGTTCAAAAACGTGTAC
ACTCCTGAAGAATTTACGCATAACTCAGACTGA
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