EsuBft2248_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2248_5a-0001
Unique NameEsuBft2248_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:410406..414788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog90675.XP_010513561.1
ProteomeIdEsuBft2248_5
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl35493|Streptophyta
Length1453
Hectar predicted targeting categoryother localisation
Evalue3.42e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMitochondrial protein
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_5aEsuBft2248_5aEctocarpus subulatus male Bft15bgeneScaffold_242 410406..414788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_5a-0001EsuBft2248_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 410406..414571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_5a-0001-exonEsuBft2248_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 410406..410719 -
EsuBft2248_5a-0001-exonagat-exon-52915Ectocarpus subulatus male Bft15bexonScaffold_242 413096..413159 -
EsuBft2248_5a-0001-exonagat-exon-52916Ectocarpus subulatus male Bft15bexonScaffold_242 413621..413989 -
EsuBft2248_5a-0001-exonagat-exon-52914Ectocarpus subulatus male Bft15bexonScaffold_242 414083..414788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_5a-0001-cdsEsuBft2248_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 410406..410719 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_5a-0001-exonagat-five_prime_utr-5767Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 414572..414788 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2248_5a-0001 ID=EsuBft2248_5a-0001|Name=EsuBft2248_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1453bp|location=Sequence derived from alignment at Scaffold_242:410406..414788- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCAGCGGCAGTGCCACACCACCGGCTGCCGGTGCCCGGGATCCAACAC
GGGTTTCTACAGCTGGCTCAGCTTCTTCTAGCAGCACCAGTGCCTCTGCA
CTCCAACGTAGCGCTGGTGGCACCATTTCTGCAGCTGGTTCATCTTCGTT
TAGCAGCAGTGCCTCTGCACGCCAACGTAACGCTGGTGGCACCACTTCCC
CGGACACTTCAGAATCGATGCCGCAGGAAGTACAAAACGGTCTGAGGAGT
TGGTTCCAAGAGGCGACAGACACGTCGGAGAAAAGAGCGCGCGCGAATAG
AGAGAAGCAGGCCGCCGCAAAGCGGGCGAAGCGGGTGGAGGGGATCGCGA
ACATCCCTGCTGCGCCGGAGCGAGAGGAGAGGATCGAGAGGGACCGTGCG
GTCGTCAGCCTGGCCAAACGGAGGGAGTCCAAGGCCAAGGCTGGGGCGGC
GGCGGGCAAGAAGTTCAGCAGGCGGGGAGCTGTCTCCAAGAGAACCCCCA
AGAAAGAAGTCCAGGTGTCAGTCCTTGAGCGGATCAAAAAGTACCCGAAC
GAAACCTTGTACAGGTCTCGCACTGGGACGCTGAAGTGCCGAGCGTGCTT
CGGCAAGGAAATCAAGAATTTCAGTTACCGGGTGGACTCCCACATCGACG
GGAAGAAGCACAAGGAAAGAGTGGCGATGACGCTGGAGACGGACGGCGAG
GACCAGGTGTTTGTTTTGCTCTGTCGCCGCGTCCCTGTCCTCGCGATTGT
AGATTGTGCAATCCCACACGCCACAACCTACAACCTAACGATGGGACTGC
TTTCGGTCATGCTGTACGTGTTCGTTTCGTCGCTACAGAATTTGCTCCAC
GTGTGTCTCAAGCGCTCCGAAGAGCAAGGAGGGACTTACGGAGACTCGCT
GTCAGACAAGGACAAGCTCACACAGATCAAGGCGGTGAAGGGTTGTTTGG
CGGCAGGTGTTCTGCTGAACGCGCTGGGCAACCCTGTGTTCGAGAAGTTC
CTCGCGCACGTCAACGTGAACTTGCCAAGCTCCGGGCATCTGGCTGAGCA
CATACCTTTGATCCTAGAGGAGGAGGTGGCACAGCGTGTTCTGCGGTTGA
GCATGCTGAAGAAGAGCATGACGGCGGACGACATTGCTGCCGGGGAGGGC
GTGAAGGAGGCGTTGTTTGTGGGTGGCGTTCTGTCGTTCATAGCGCCCGA
GACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCG
CCTTAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCAACGTA
CGGTTCCATTTCATTCGCGAGCTATTCAAGTCGTGCAAGATCACTGCAGA
GCATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTG
GCAGAGAGAAGTTAGAGTACCACTGGAAGGCTCTGATGAACCTACCGATG
TAG
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protein sequence of EsuBft2248_5a-0001

>EsuBft2248_5 ID=EsuBft2248_5|Name=EsuBft2248_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=411bp
MPQEVQNGLRSWFQEATDTSEKRARANREKQAAAKRAKRVEGIANIPAAP
EREERIERDRAVVSLAKRRESKAKAGAAAGKKFSRRGAVSKRTPKKEVQV
SVLERIKKYPNETLYRSRTGTLKCRACFGKEIKNFSYRVDSHIDGKKHKE
RVAMTLETDGEDQVFVLLCRRVPVLAIVDCAIPHATTYNLTMGLLSVMLY
VFVSSLQNLLHVCLKRSEEQGGTYGDSLSDKDKLTQIKAVKGCLAAGVLL
NALGNPVFEKFLAHVNVNLPSSGHLAEHIPLILEEEVAQRVLRLSMLKKS
MTADDIAAGEGVKEALFVGGVLSFIAPETSGAKIKVLEDNKGALALIENP
FSSARSKHINVRFHFIRELFKSCKITAEHVPTGEQHADMLTKVLGREKLE
YHWKALMNLPM
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mRNA from alignment at Scaffold_242:410406..414788-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2248_5a-0001 ID=EsuBft2248_5a-0001|Name=EsuBft2248_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4383bp|location=Sequence derived from alignment at Scaffold_242:410406..414788- (Ectocarpus subulatus male Bft15b)
CGGCAGCGGCAGTGCCACACCACCGGCTGCCGGTGCCCGGGATCCAACAC
GGGTTTCTACAGCTGGCTCAGCTTCTTCTAGCAGCACCAGTGCCTCTGCA
CTCCAACGTAGCGCTGGTGGCACCATTTCTGCAGCTGGTTCATCTTCGTT
TAGCAGCAGTGCCTCTGCACGCCAACGTAACGCTGGTGGCACCACTTCCC
CGGACACTTCAGAATCGATGCCGCAGGAAGTACAAAACGGTCTGAGGAGT
TGGTTCCAAGAGGCGACAGACACGTCGGAGAAAAGAGCGCGCGCGAATAG
AGAGAAGCAGGCCGCCGCAAAGCGGGCGAAGCGGGTGGAGGGGATCGCGA
ACATCCCTGCTGCGCCGGAGCGAGAGGAGAGGATCGAGAGGGACCGTGCG
GTCGTCAGCCTGGCCAAACGGAGGGAGTCCAAGGCCAAGGCTGGGGCGGC
GGCGGGCAAGAAGTTCAGCAGGCGGGGAGCTGTCTCCAAGAGAACCCCCA
AGAAAGAAGTCCAGGTGTCAGTCCTTGAGCGGATCAAAAAGTACCCGAAC
GAAACCTTGTACAGGTCTCGCACTGGGACGCTGAAGTGCCGAGCGTGCTT
CGGCAAGGAAATCAAGAATTTCAGTTACCGGGTGGACTCCCACATCGACG
GGAAGAAGCACAAGGAAAGAGTGGCGATGACGCTGGAGACGGACGGCGAG
GACCAGGTGAGCGTGTGTTCGTTGGTGGTGCAGTTTGGTATAGTGTAACA
CACCACTAGGCCACTGCGGTTTGCATTTGCTGCGTACCTGCCTTTGCAGG
TGTTTGTTTTGCTCTGTCGCCGCGTCCCTGTCCTCGCGATTGTAGATTGT
GCAATCCCACACGCCACAACCTACAACCTAACGATGGGACTGCTTTCGGT
CATGCTGTACGTGTTCGTTTCGTCGCTACAGAATTTGCTCCACGTGTGTC
TCAAGCGCTCCGAAGAGCAAGGAGGGACTTACGGAGACTCGCTGTCAGAC
AAGGACAAGCTCACACAGATCAAGGCGGTGAAGGGTTGTTTGGCGGCAGG
TGTTCTGCTGAACGCGCTGGGCAACCCTGTGTTCGAGAAGTTCCTCGCGC
ACGTCAACGTGAACTTGCCAAGCTCCGGGCATCTGGCTGAGCACATACCT
TTGATCCTAGAGGAGGAGGTGAGAACACTAAAGTTACCAATAAAAAAGAA
AAGAGGGGCTGTGCCTGGTGTGTCTGTTTTCCAAGACGGTAGTGTGGACG
AGTGCAAAATTCAAAATCTCACCGATAAACATAATACTCAGCACGTGTGT
GTGTCCTGCTGTGCCGTATTCCGTTGAAATTTTCGGGAACAGCAGCCAAG
ATACGCGATGAGATGGGCGACCGACCTTACGCGTTGTGCTTCGATGCCAC
TCCCTACCTCTGCGAGTGCTTCGGGGTTGGGGTTCGATTCATCAACGCAA
GTGAGCAGGTAATTAAAATGTTGCTGTTGCCGTTCGTCCTCAGTAGTTCT
TTGTCGTGCCCGAGTCCGACGGTATCGATTTAGACGTGAAAGCAATAGCA
ATAGTTTGGCAGCCGCGAAACCACCCAGTTCCTGTGCCCCCTCTCCCGTC
GCGTCTATGTTTCGACCTTATCTCGACAGGTGGCACAGCGTGTTCTGCGG
TTGAGCATGCTGAAGAAGAGCATGACGGCGGACGACATTGCTGGTGAGGT
CACCCGCATCGTCACCCATGAGTATGGCCTCGACCCGGNNNNNNNNNNNN
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TTCTCGACCCCGCACAACATGATCTACTCGACCACCATTATGGTTATCGC
AAAAACAACAAAAAACGGTAGTAAGCTGGTTGCCGAGTATACGAAGTGAA
TTGGCTTGTTGTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGAT
GGCCAACACCGGGGGGGGGCGGCTTGTTTCGTTGCCAAGCGACGAAAACC
CAACCCCGATGGCCAACACCGGGGGGGGGCGGCTTGTTTCGTTGCCAAGC
GACGAAAACCCAACCCCGATGGCCAACACCGGGGGGGGGCGGCTTGTTTC
GTTGCCAAGCGACGAAAACCCAACCCCGATGGCCAACACCGGGGGGGGGC
GGCTTGTTTCGTTGCCAAGCGACGAAACCCAACCCCGATGGCTGACACCG
GGAGGGGGGTGGATGGCAGCCGGGGAGGGCGTGAAGGAGGCGTTGTTTGT
GGGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCA
AGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTC
AGCTCAGCGAGGAGCAAGCACATCAACGTACGGTTCCATTTCATTCGCGA
GCTATTCAAGTCGTGCAAGATCACTGCAGAGCATGTTCCGACTGGAGAGC
AGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTAC
CACTGGAAGGCTCTGATGAACCTACCGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_242:410406..414788-

>EsuBft2248_5a-0001 ID=EsuBft2248_5a-0001|Name=EsuBft2248_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1236bp|location=Sequence derived from alignment at Scaffold_242:410406..414788- (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGAAGTACAAAACGGTCTGAGGAGTTGGTTCCAAGAGGCGAC
AGACACGTCGGAGAAAAGAGCGCGCGCGAATAGAGAGAAGCAGGCCGCCG
CAAAGCGGGCGAAGCGGGTGGAGGGGATCGCGAACATCCCTGCTGCGCCG
GAGCGAGAGGAGAGGATCGAGAGGGACCGTGCGGTCGTCAGCCTGGCCAA
ACGGAGGGAGTCCAAGGCCAAGGCTGGGGCGGCGGCGGGCAAGAAGTTCA
GCAGGCGGGGAGCTGTCTCCAAGAGAACCCCCAAGAAAGAAGTCCAGGTG
TCAGTCCTTGAGCGGATCAAAAAGTACCCGAACGAAACCTTGTACAGGTC
TCGCACTGGGACGCTGAAGTGCCGAGCGTGCTTCGGCAAGGAAATCAAGA
ATTTCAGTTACCGGGTGGACTCCCACATCGACGGGAAGAAGCACAAGGAA
AGAGTGGCGATGACGCTGGAGACGGACGGCGAGGACCAGGTGTTTGTTTT
GCTCTGTCGCCGCGTCCCTGTCCTCGCGATTGTAGATTGTGCAATCCCAC
ACGCCACAACCTACAACCTAACGATGGGACTGCTTTCGGTCATGCTGTAC
GTGTTCGTTTCGTCGCTACAGAATTTGCTCCACGTGTGTCTCAAGCGCTC
CGAAGAGCAAGGAGGGACTTACGGAGACTCGCTGTCAGACAAGGACAAGC
TCACACAGATCAAGGCGGTGAAGGGTTGTTTGGCGGCAGGTGTTCTGCTG
AACGCGCTGGGCAACCCTGTGTTCGAGAAGTTCCTCGCGCACGTCAACGT
GAACTTGCCAAGCTCCGGGCATCTGGCTGAGCACATACCTTTGATCCTAG
AGGAGGAGGTGGCACAGCGTGTTCTGCGGTTGAGCATGCTGAAGAAGAGC
ATGACGGCGGACGACATTGCTGCCGGGGAGGGCGTGAAGGAGGCGTTGTT
TGTGGGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGA
TCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCG
TTCAGCTCAGCGAGGAGCAAGCACATCAACGTACGGTTCCATTTCATTCG
CGAGCTATTCAAGTCGTGCAAGATCACTGCAGAGCATGTTCCGACTGGAG
AGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAG
TACCACTGGAAGGCTCTGATGAACCTACCGATGTAG
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