EsuBft2248_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2248_2a-0001
Unique NameEsuBft2248_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:394128..396628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2248_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length63
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_2aEsuBft2248_2aEctocarpus subulatus male Bft15bgeneScaffold_242 394128..396628 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_2a-0001-exonEsuBft2248_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 394128..394240 +
EsuBft2248_2a-0001-exonagat-exon-52910Ectocarpus subulatus male Bft15bexonScaffold_242 395416..395444 +
EsuBft2248_2a-0001-exonagat-exon-52911Ectocarpus subulatus male Bft15bexonScaffold_242 395720..395904 +
EsuBft2248_2a-0001-exonagat-exon-52909Ectocarpus subulatus male Bft15bexonScaffold_242 396320..396628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_2a-0001-cdsEsuBft2248_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 394128..394240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2248_2a-0001EsuBft2248_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 394128..396628 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2248_2a-0001 ID=EsuBft2248_2a-0001|Name=EsuBft2248_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=636bp|location=Sequence derived from alignment at Scaffold_242:394128..396628+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGCTAAGGGAGGAGCTTTTGAAGATGACGTTCCCCTGCCTTGA
AGACGAAGCGGGGCAGGCCTTTGGCGAGGCGACATGGGAGAACGCCGTGG
ACATGTTCATCGCGAAACGCTGCCGGTCCTATCCTTTCAACGGCTCAGAG
GATGGCAGCGTGGAGCACGAGCGCCCACGAGAGATGGCCAATGAGATGAC
ACACGAGATGGTCCAAGAGCAAGAGGAATTGATTCGCCTGATGTACTTTC
AACACAACGACACGAGGGCTATTCACAAGACCGTTGAGCGCGATGGGATG
GTTCTGGGACCGAGAGGGAAGCAGCAGTTTTGGCGGCACCACAGCAACAG
CCACAAGCACGTGCTGAGGCCGACAGACGCGGAAAGGGAGGGCCAGCTCT
TTAGGGAAGACTGTCTCTACTACCAAAGCCAAAGAGGAAGCGCCAATCGG
CCGTCTGGGAACAAGAAAATCATGCTGTATCTCCGGTATCTTTGGTCTCT
TCTTGGTCTCCACCCACACATGTCCTGCCTTACAGCGCAGCACAGCACAG
CTTTGCCTTCCTCTCCGAAGACCAGCAGGTGTGTTGTGGTGATGGTGGAG
TATGGGTGGTACGTGAGATTGCTGGTACTGCTGTAG
back to top

protein sequence of EsuBft2248_2a-0001

>EsuBft2248_2 ID=EsuBft2248_2|Name=EsuBft2248_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=211bp
MSRLREELLKMTFPCLEDEAGQAFGEATWENAVDMFIAKRCRSYPFNGSE
DGSVEHERPREMANEMTHEMVQEQEELIRLMYFQHNDTRAIHKTVERDGM
VLGPRGKQQFWRHHSNSHKHVLRPTDAEREGQLFREDCLYYQSQRGSANR
PSGNKKIMLYLRYLWSLLGLHPHMSCLTAQHSTALPSSPKTSRCVVVMVE
YGWYVRLLVLL
back to top

mRNA from alignment at Scaffold_242:394128..396628+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2248_2a-0001 ID=EsuBft2248_2a-0001|Name=EsuBft2248_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2501bp|location=Sequence derived from alignment at Scaffold_242:394128..396628+ (Ectocarpus subulatus male Bft15b)
ATGTCGCGGCTAAGGGAGGAGCTTTTGAAGATGACGTTCCCCTGCCTTGA
AGACGAAGCGGGGCAGGCCTTTGGCGAGGCGACATGGGAGAACGCCGTGG
ACATGTTCATCGCGTGTGTCGGCCACGGATAGCACCTGAAACGCCGAAAC
AAAGTAAAGGTAGGCTTGAAAAGTGTGACAACTGCTGCGACCTTTGGCTT
TGCGTGCGCCCTGGCCACGCGAGCACGCGCGGCCTGTCCCGTCCTTCAGT
GAACAGTGGCACGCTGAAGGTCCATGTACCCGCCACGGGCACGCACCGTG
CTGTCTATCATCGCATGTCTGCATGTCCCCCACTCCTGACATCGGAAATT
CCGTCTCTACAATTCGTTCTCTCTGTCTTCCGCTGTCTTCCGAGCTTTAT
TCTGAAAATGCGAACCCAAATCGGCTCCAGAAAAACAGGTGGAGGACCGT
CCACATCATCTGTGAACAAGGCGGGAAGCCAGACAAACGGGGTCTGACGG
GCCCAGCCGACGCTCCCGTGAAGAAAACGAACAAGAACACTTCAACGAAG
AAGGTTTTGTTATGAAGATTCGAAGTGATTCGTGTTGAGCGCCCCACAGC
AGCTAAACGGACTCCCGTCCAAAATCGCCGTGCGCTCTGTAGAGAAGTGG
ATTGGAGAGGTACGCAGCGTAGTCGCCTCTGTGCTTTTCCTTGGTCTGGT
CGCCGATGGACGACAAAACATCGTCTGCGCTGCACCAATATACGCATGCA
TAGCATTGTGGCACTTGCACTGTGGCACTTGCGTCTGATGAAAACCTGAT
CTTCTGCTGTAGTTGTATGCCTAAATTGCTCCTTCTGCCCGGAGCAGCGT
ATGCACGTAGCACGTACCTCTGCGTGCGTGTCGATGTATGCAGTGGTAAA
AGTGTTTTTGTTGATGGTGGTGAAGGAACAGGTGCGCTCGCCAAGTATTT
CGTACAGGAAGAAACCTGTCCAGGATGTTCGAAACGGCAGTCTTATGCGC
CATCCATTGTAAGATGTTGTTCGTTCCTTGTACCAGCTTCACGGCAGACA
CCCGTCCTCGCTGTCGTCTTCCTGATATATCGCGCTCCCAAAAGACGTGT
ATGGTTTTCATGCCGAAGCTTGTTGAGTAGAAGATGTGCTCGTTAGCGTT
GTTTGAAAGACACCGATGCTGCCCGTGTCCTGACAGATTCCGAACCCCTC
CCCAACTCCGTGACTGCGAATTTTGCCCGCCGTGTGTTGTGCGGAGTCTA
GATTAATTGCGGCTTTATTGGAGCGTTCAACTGGGCAGGAAACGCTGCCG
GTCCTATCCTTTCAACGGTGAGTCTACTTCCGTATAGAGTTGGCGTATCG
GTGACCGCTATCCGCAGCCATCGCCCACTGGTTGCATGCGTGCTGTCGCT
CGCGGTGGTGTCGCTCGTGGTGAAAGTGCAGCAGCGCATGTTGCTGCAAC
CCATTTTTTTTACTCGATGTCCCTAATCATTATGTCACCCTTGTTCGGTC
GCCCCTCCGTTCCCCCTGCTTTGCCGAACATGGATCTGTCGCGTGTTCAA
TCCGAACGGCTCAGACCTCGTTGTGTCTGCACCACAAAGTAGGCTCAGAG
GATGGCAGCGTGGAGCACGAGCGCCCACGAGAGATGGCCAATGAGATGAC
ACACGAGATGGTCCAAGAGCAAGAGGAATTGATTCGCCTGATGTACTTTC
AACACAACGACACGAGGGCTATTCACAAGACCGTTGAGCGCGATGGGATG
GTTCTGGGACCGAGAGGGAAGCAGCAGGTAAGTGGGTGAGGATAGACCCC
GGACGTAACACGTGCTCAGCGCTGTAGTTTTGCGGCTTGGCGTGGAGGTA
TTACGTTCGGATCCCACCGGCATCCCGTGGAAGGAGTCCTCGTTTGGTCG
CCCTTGAGTTGCGCGCACGTGTGATATCAGCACAAGTAGGGGTCGCTTGG
TCATGAACTTTACGATAATGTCACCGTACTACCTCGGCCCGGCACTGCGT
GTATTCTCGCCGTAGATAAGAACCATGATAACGCGATTTGGCCAAGACCG
AGACAGAGCCCTTGGAGGGGCGACCATATGTAATGGCATGAACGTCCATG
CCAAGTTTTTGACATTGAGGGGACAAAACTACCCCATCCCTTGTACCAAA
ACGCCATAATTTGTGCTTTAAAACCACCAAACAATTGGCCAGTTTTGGCG
GCACCACAGCAACAGCCACAAGCACGTGCTGAGGCCGACAGACGCGGAAA
GGGAGGGCCAGCTCTTTAGGGAAGACTGTCTCTACTACCAAAGCCAAAGA
GGAAGCGCCAATCGGCCGTCTGGGAACAAGAAAATCATGCTGTATCTCCG
GTATCTTTGGTCTCTTCTTGGTCTCCACCCACACATGTCCTGCCTTACAG
CGCAGCACAGCACAGCTTTGCCTTCCTCTCCGAAGACCAGCAGGTGTGTT
GTGGTGATGGTGGAGTATGGGTGGTACGTGAGATTGCTGGTACTGCTGTA
G
back to top

Coding sequence (CDS) from alignment at Scaffold_242:394128..396628+

>EsuBft2248_2a-0001 ID=EsuBft2248_2a-0001|Name=EsuBft2248_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=636bp|location=Sequence derived from alignment at Scaffold_242:394128..396628+ (Ectocarpus subulatus male Bft15b)
ATGTCGCGGCTAAGGGAGGAGCTTTTGAAGATGACGTTCCCCTGCCTTGA
AGACGAAGCGGGGCAGGCCTTTGGCGAGGCGACATGGGAGAACGCCGTGG
ACATGTTCATCGCGAAACGCTGCCGGTCCTATCCTTTCAACGGCTCAGAG
GATGGCAGCGTGGAGCACGAGCGCCCACGAGAGATGGCCAATGAGATGAC
ACACGAGATGGTCCAAGAGCAAGAGGAATTGATTCGCCTGATGTACTTTC
AACACAACGACACGAGGGCTATTCACAAGACCGTTGAGCGCGATGGGATG
GTTCTGGGACCGAGAGGGAAGCAGCAGTTTTGGCGGCACCACAGCAACAG
CCACAAGCACGTGCTGAGGCCGACAGACGCGGAAAGGGAGGGCCAGCTCT
TTAGGGAAGACTGTCTCTACTACCAAAGCCAAAGAGGAAGCGCCAATCGG
CCGTCTGGGAACAAGAAAATCATGCTGTATCTCCGGTATCTTTGGTCTCT
TCTTGGTCTCCACCCACACATGTCCTGCCTTACAGCGCAGCACAGCACAG
CTTTGCCTTCCTCTCCGAAGACCAGCAGGTGTGTTGTGGTGATGGTGGAG
TATGGGTGGTACGTGAGATTGCTGGTACTGCTGTAG
back to top