EsuBft2235_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2235_3a-0001
Unique Name	EsuBft2235_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:80991..82172 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft2235_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	118
Hectar predicted targeting category	other localisation
Evalue	1.37e-182
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a	EsuBft2235_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 80991..82172 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a-0001-exon	EsuBft2235_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 80991..82172 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a-0001-exon	agat-five_prime_utr-5737	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_228 80991..81209 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a-0001-cds	EsuBft2235_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 81210..82130 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a-0001-exon	agat-three_prime_utr-8886	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 82131..82172 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_3a-0001	EsuBft2235_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 81210..82130 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:80991..82172+
coding sequence from alignment at Scaffold_228:80991..82172+

spliced messenger RNA

>EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1182bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGCGCCCTCCACACTATTCCTCGAACGCGTAGGCCATCACACCCGAGGG
CAAATTGCCGCAGCAACTGCGATACGTGTTCATCCAGAAGGGTTCCACCA
AGCGTTTCAGCGATGTGAAGGGAGCCATCCAGCGCGTACAACGTATCTGG
TGTGGGTCCCCAGCCGGTAAGGCTGGTGCACCATTCATACTCGGTGGGGA
CGAGGAGACGTACAAGCACATGTACCACGTCATGGCACAGGAGTCGAGCG
AGTACCGACAAGTCCGTCGCTACCCCGGCGATTGGCATTTGCTGTTGCAC
ATGGCCAAGGCGATGCTTACGCGGTACTGGGGTGCTGGCGTGGAGTTCGT
GGCGAAGGATTTGGGCATAGACGAGTCGAAGTCGGGGGAGGGGAGCAACT
ACCGTCGGGCCTTCCACCACATAACGTGGTTTTTGGCGGCGTTTATGGCT
CTGTGTCGACAGGAATACTTGAAGAGCTTGCAGACGCCAGGTGACAGACC
GGTGGAAGAGGACAAGGTGGTCGACGGGGTGGTTCGGTGGATAGTGGCAC
GGGCGGAGTCTCACAAGACTTTCGCAGTGTGGAAGCAGTTCCTCCTCCAC
GACTACCCTGCGTACATCGCCTTCCCAACTGCCCTGCGTACGGGGAACTT
CAGGCTAAGGCTTGAAGGCCTTCGCCGTATCGCCCCCGTTTTTTCCATCA
CCGGCAAAGACAAGTACCACTTCCTCGTGGTAGATCATCTGACGGAGGTG
TCGCGTTATTCGCGCAATGATATGAGGGTCGTATCCGAGCTATTCTCCGT
CTCACTCGGCCCTGACACGTTTGCACGAATCGGCTTGGACGAGCGGCAGG
TGTCCAATCGTCTCTACAAGACATTGACGAAAAGGATTCTTTCGAGCACG
ATAGAAAAGCTGGCACCGATTGCCCAGCTGCGTGAAGTCGACATCTTCGA
CTTCGAATCGTATTTCATCGAGAAACCACGCACGGACAGGGACCGTTGCA
GAGAGTTGGCGGTGAAACGTGCACCAGCAGTCAGGGCGGCGATGGACTGC
TTGAGAGAGAGCCCGGCATGTGAAGGCGACGATGGAAAGACAAGGTCGTG
GCGTTGGACAGGAGAGTGTTTCCGCCGGTCAAGTGGCTAGAGATTCTCGA
CTCGCCCGCTGAGGCTCGTACGAAAATGCGCG

protein sequence of EsuBft2235_3a-0001

>EsuBft2235_3 ID=EsuBft2235_3|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MYHVMAQESSEYRQVRRYPGDWHLLLHMAKAMLTRYWGAGVEFVAKDLGI
DESKSGEGSNYRRAFHHITWFLAAFMALCRQEYLKSLQTPGDRPVEEDKV
VDGVVRWIVARAESHKTFAVWKQFLLHDYPAYIAFPTALRTGNFRLRLEG
LRRIAPVFSITGKDKYHFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDT
FARIGLDERQVSNRLYKTLTKRILSSTIEKLAPIAQLREVDIFDFESYFI
EKPRTDRDRCRELAVKRAPAVRAAMDCLRESPACEGDDGKTRSWRWTGEC
FRRSSG

mRNA from alignment at Scaffold_228:80991..82172+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1182bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)
TCGCGCCCTCCACACTATTCCTCGAACGCGTAGGCCATCACACCCGAGGG
CAAATTGCCGCAGCAACTGCGATACGTGTTCATCCAGAAGGGTTCCACCA
AGCGTTTCAGCGATGTGAAGGGAGCCATCCAGCGCGTACAACGTATCTGG
TGTGGGTCCCCAGCCGGTAAGGCTGGTGCACCATTCATACTCGGTGGGGA
CGAGGAGACGTACAAGCACATGTACCACGTCATGGCACAGGAGTCGAGCG
AGTACCGACAAGTCCGTCGCTACCCCGGCGATTGGCATTTGCTGTTGCAC
ATGGCCAAGGCGATGCTTACGCGGTACTGGGGTGCTGGCGTGGAGTTCGT
GGCGAAGGATTTGGGCATAGACGAGTCGAAGTCGGGGGAGGGGAGCAACT
ACCGTCGGGCCTTCCACCACATAACGTGGTTTTTGGCGGCGTTTATGGCT
CTGTGTCGACAGGAATACTTGAAGAGCTTGCAGACGCCAGGTGACAGACC
GGTGGAAGAGGACAAGGTGGTCGACGGGGTGGTTCGGTGGATAGTGGCAC
GGGCGGAGTCTCACAAGACTTTCGCAGTGTGGAAGCAGTTCCTCCTCCAC
GACTACCCTGCGTACATCGCCTTCCCAACTGCCCTGCGTACGGGGAACTT
CAGGCTAAGGCTTGAAGGCCTTCGCCGTATCGCCCCCGTTTTTTCCATCA
CCGGCAAAGACAAGTACCACTTCCTCGTGGTAGATCATCTGACGGAGGTG
TCGCGTTATTCGCGCAATGATATGAGGGTCGTATCCGAGCTATTCTCCGT
CTCACTCGGCCCTGACACGTTTGCACGAATCGGCTTGGACGAGCGGCAGG
TGTCCAATCGTCTCTACAAGACATTGACGAAAAGGATTCTTTCGAGCACG
ATAGAAAAGCTGGCACCGATTGCCCAGCTGCGTGAAGTCGACATCTTCGA
CTTCGAATCGTATTTCATCGAGAAACCACGCACGGACAGGGACCGTTGCA
GAGAGTTGGCGGTGAAACGTGCACCAGCAGTCAGGGCGGCGATGGACTGC
TTGAGAGAGAGCCCGGCATGTGAAGGCGACGATGGAAAGACAAGGTCGTG
GCGTTGGACAGGAGAGTGTTTCCGCCGGTCAAGTGGCTAGAGATTCTCGA
CTCGCCCGCTGAGGCTCGTACGAAAATGCGCG

Coding sequence (CDS) from alignment at Scaffold_228:80991..82172+

>EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)
ATGTACCACGTCATGGCACAGGAGTCGAGCGAGTACCGACAAGTCCGTCG
CTACCCCGGCGATTGGCATTTGCTGTTGCACATGGCCAAGGCGATGCTTA
CGCGGTACTGGGGTGCTGGCGTGGAGTTCGTGGCGAAGGATTTGGGCATA
GACGAGTCGAAGTCGGGGGAGGGGAGCAACTACCGTCGGGCCTTCCACCA
CATAACGTGGTTTTTGGCGGCGTTTATGGCTCTGTGTCGACAGGAATACT
TGAAGAGCTTGCAGACGCCAGGTGACAGACCGGTGGAAGAGGACAAGGTG
GTCGACGGGGTGGTTCGGTGGATAGTGGCACGGGCGGAGTCTCACAAGAC
TTTCGCAGTGTGGAAGCAGTTCCTCCTCCACGACTACCCTGCGTACATCG
CCTTCCCAACTGCCCTGCGTACGGGGAACTTCAGGCTAAGGCTTGAAGGC
CTTCGCCGTATCGCCCCCGTTTTTTCCATCACCGGCAAAGACAAGTACCA
CTTCCTCGTGGTAGATCATCTGACGGAGGTGTCGCGTTATTCGCGCAATG
ATATGAGGGTCGTATCCGAGCTATTCTCCGTCTCACTCGGCCCTGACACG
TTTGCACGAATCGGCTTGGACGAGCGGCAGGTGTCCAATCGTCTCTACAA
GACATTGACGAAAAGGATTCTTTCGAGCACGATAGAAAAGCTGGCACCGA
TTGCCCAGCTGCGTGAAGTCGACATCTTCGACTTCGAATCGTATTTCATC
GAGAAACCACGCACGGACAGGGACCGTTGCAGAGAGTTGGCGGTGAAACG
TGCACCAGCAGTCAGGGCGGCGATGGACTGCTTGAGAGAGAGCCCGGCAT
GTGAAGGCGACGATGGAAAGACAAGGTCGTGGCGTTGGACAGGAGAGTGT
TTCCGCCGGTCAAGTGGCTAG