Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIA9 |
| ProteomeId | EsuBft2235_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 118 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.37e-182 |
| EggNOG OGs | 2D5KK@1|root,2SYVY@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1182bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCGCGCCCTCCACACTATTCCTCGAACGCGTAGGCCATCACACCCGAGGG
CAAATTGCCGCAGCAACTGCGATACGTGTTCATCCAGAAGGGTTCCACCA
AGCGTTTCAGCGATGTGAAGGGAGCCATCCAGCGCGTACAACGTATCTGG
TGTGGGTCCCCAGCCGGTAAGGCTGGTGCACCATTCATACTCGGTGGGGA
CGAGGAGACGTACAAGCACATGTACCACGTCATGGCACAGGAGTCGAGCG
AGTACCGACAAGTCCGTCGCTACCCCGGCGATTGGCATTTGCTGTTGCAC
ATGGCCAAGGCGATGCTTACGCGGTACTGGGGTGCTGGCGTGGAGTTCGT
GGCGAAGGATTTGGGCATAGACGAGTCGAAGTCGGGGGAGGGGAGCAACT
ACCGTCGGGCCTTCCACCACATAACGTGGTTTTTGGCGGCGTTTATGGCT
CTGTGTCGACAGGAATACTTGAAGAGCTTGCAGACGCCAGGTGACAGACC
GGTGGAAGAGGACAAGGTGGTCGACGGGGTGGTTCGGTGGATAGTGGCAC
GGGCGGAGTCTCACAAGACTTTCGCAGTGTGGAAGCAGTTCCTCCTCCAC
GACTACCCTGCGTACATCGCCTTCCCAACTGCCCTGCGTACGGGGAACTT
CAGGCTAAGGCTTGAAGGCCTTCGCCGTATCGCCCCCGTTTTTTCCATCA
CCGGCAAAGACAAGTACCACTTCCTCGTGGTAGATCATCTGACGGAGGTG
TCGCGTTATTCGCGCAATGATATGAGGGTCGTATCCGAGCTATTCTCCGT
CTCACTCGGCCCTGACACGTTTGCACGAATCGGCTTGGACGAGCGGCAGG
TGTCCAATCGTCTCTACAAGACATTGACGAAAAGGATTCTTTCGAGCACG
ATAGAAAAGCTGGCACCGATTGCCCAGCTGCGTGAAGTCGACATCTTCGA
CTTCGAATCGTATTTCATCGAGAAACCACGCACGGACAGGGACCGTTGCA
GAGAGTTGGCGGTGAAACGTGCACCAGCAGTCAGGGCGGCGATGGACTGC
TTGAGAGAGAGCCCGGCATGTGAAGGCGACGATGGAAAGACAAGGTCGTG
GCGTTGGACAGGAGAGTGTTTCCGCCGGTCAAGTGGCTAGAGATTCTCGA
CTCGCCCGCTGAGGCTCGTACGAAAATGCGCG back to topprotein sequence of EsuBft2235_3a-0001 >EsuBft2235_3 ID=EsuBft2235_3|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MYHVMAQESSEYRQVRRYPGDWHLLLHMAKAMLTRYWGAGVEFVAKDLGI
DESKSGEGSNYRRAFHHITWFLAAFMALCRQEYLKSLQTPGDRPVEEDKV
VDGVVRWIVARAESHKTFAVWKQFLLHDYPAYIAFPTALRTGNFRLRLEG
LRRIAPVFSITGKDKYHFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDT
FARIGLDERQVSNRLYKTLTKRILSSTIEKLAPIAQLREVDIFDFESYFI
EKPRTDRDRCRELAVKRAPAVRAAMDCLRESPACEGDDGKTRSWRWTGEC
FRRSSG back to topmRNA from alignment at Scaffold_228:80991..82172+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1182bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)
TCGCGCCCTCCACACTATTCCTCGAACGCGTAGGCCATCACACCCGAGGG
CAAATTGCCGCAGCAACTGCGATACGTGTTCATCCAGAAGGGTTCCACCA
AGCGTTTCAGCGATGTGAAGGGAGCCATCCAGCGCGTACAACGTATCTGG
TGTGGGTCCCCAGCCGGTAAGGCTGGTGCACCATTCATACTCGGTGGGGA
CGAGGAGACGTACAAGCACATGTACCACGTCATGGCACAGGAGTCGAGCG
AGTACCGACAAGTCCGTCGCTACCCCGGCGATTGGCATTTGCTGTTGCAC
ATGGCCAAGGCGATGCTTACGCGGTACTGGGGTGCTGGCGTGGAGTTCGT
GGCGAAGGATTTGGGCATAGACGAGTCGAAGTCGGGGGAGGGGAGCAACT
ACCGTCGGGCCTTCCACCACATAACGTGGTTTTTGGCGGCGTTTATGGCT
CTGTGTCGACAGGAATACTTGAAGAGCTTGCAGACGCCAGGTGACAGACC
GGTGGAAGAGGACAAGGTGGTCGACGGGGTGGTTCGGTGGATAGTGGCAC
GGGCGGAGTCTCACAAGACTTTCGCAGTGTGGAAGCAGTTCCTCCTCCAC
GACTACCCTGCGTACATCGCCTTCCCAACTGCCCTGCGTACGGGGAACTT
CAGGCTAAGGCTTGAAGGCCTTCGCCGTATCGCCCCCGTTTTTTCCATCA
CCGGCAAAGACAAGTACCACTTCCTCGTGGTAGATCATCTGACGGAGGTG
TCGCGTTATTCGCGCAATGATATGAGGGTCGTATCCGAGCTATTCTCCGT
CTCACTCGGCCCTGACACGTTTGCACGAATCGGCTTGGACGAGCGGCAGG
TGTCCAATCGTCTCTACAAGACATTGACGAAAAGGATTCTTTCGAGCACG
ATAGAAAAGCTGGCACCGATTGCCCAGCTGCGTGAAGTCGACATCTTCGA
CTTCGAATCGTATTTCATCGAGAAACCACGCACGGACAGGGACCGTTGCA
GAGAGTTGGCGGTGAAACGTGCACCAGCAGTCAGGGCGGCGATGGACTGC
TTGAGAGAGAGCCCGGCATGTGAAGGCGACGATGGAAAGACAAGGTCGTG
GCGTTGGACAGGAGAGTGTTTCCGCCGGTCAAGTGGCTAGAGATTCTCGA
CTCGCCCGCTGAGGCTCGTACGAAAATGCGCG back to topCoding sequence (CDS) from alignment at Scaffold_228:80991..82172+ >EsuBft2235_3a-0001 ID=EsuBft2235_3a-0001|Name=EsuBft2235_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_228:80991..82172+ (Ectocarpus subulatus male Bft15b)
ATGTACCACGTCATGGCACAGGAGTCGAGCGAGTACCGACAAGTCCGTCG
CTACCCCGGCGATTGGCATTTGCTGTTGCACATGGCCAAGGCGATGCTTA
CGCGGTACTGGGGTGCTGGCGTGGAGTTCGTGGCGAAGGATTTGGGCATA
GACGAGTCGAAGTCGGGGGAGGGGAGCAACTACCGTCGGGCCTTCCACCA
CATAACGTGGTTTTTGGCGGCGTTTATGGCTCTGTGTCGACAGGAATACT
TGAAGAGCTTGCAGACGCCAGGTGACAGACCGGTGGAAGAGGACAAGGTG
GTCGACGGGGTGGTTCGGTGGATAGTGGCACGGGCGGAGTCTCACAAGAC
TTTCGCAGTGTGGAAGCAGTTCCTCCTCCACGACTACCCTGCGTACATCG
CCTTCCCAACTGCCCTGCGTACGGGGAACTTCAGGCTAAGGCTTGAAGGC
CTTCGCCGTATCGCCCCCGTTTTTTCCATCACCGGCAAAGACAAGTACCA
CTTCCTCGTGGTAGATCATCTGACGGAGGTGTCGCGTTATTCGCGCAATG
ATATGAGGGTCGTATCCGAGCTATTCTCCGTCTCACTCGGCCCTGACACG
TTTGCACGAATCGGCTTGGACGAGCGGCAGGTGTCCAATCGTCTCTACAA
GACATTGACGAAAAGGATTCTTTCGAGCACGATAGAAAAGCTGGCACCGA
TTGCCCAGCTGCGTGAAGTCGACATCTTCGACTTCGAATCGTATTTCATC
GAGAAACCACGCACGGACAGGGACCGTTGCAGAGAGTTGGCGGTGAAACG
TGCACCAGCAGTCAGGGCGGCGATGGACTGCTTGAGAGAGAGCCCGGCAT
GTGAAGGCGACGATGGAAAGACAAGGTCGTGGCGTTGGACAGGAGAGTGT
TTCCGCCGGTCAAGTGGCTAG back to top
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