Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIA9 |
| ProteomeId | EsuBft2235_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 316 |
| Evalue | 2.24e-80 |
| EggNOG OGs | 2D5KK@1|root,2SYVY@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3166bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGTGTCCTGTACTACGTGTTAAAGAACGAAAAACTCAACGGCGCGAAAC
TCAGGGGCGCGACCAAGAAGAAGGTTTTCTCCGTCCCGGCTAGGAACAGC
ATCAACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTC
CGTCGGTAACGCCTACGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGA
ACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAG
ATGCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGG
CAACGTGACGGGAGGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGA
AATGGGTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTAC
GACGCTGACGCTCATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGT
GCACCCGGAATATCTCGAGAATGGAACTGCGGGAACAATCGACTACTTCA
AGAGGCAGCTGTTGCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTG
TGCTACGACCGACAGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCT
TGGGAGGACCGAGAAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGT
CAACGGACCTTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGAT
GGCAAGGCGGCGCGGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCT
AGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCAT
TCTATGGCGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTG
GATTCGAGCGAATCTGGCTCCAGCGATGGGGAACCTGACGGGGTGAGCGA
GAAGAGCGTCGACTCCAACTGGAGTGACGGAGACACAGATGATGGTGTTG
CGGATCTCGTAACCGACATCTGGAACTGAGATCCGGCTACTCCTTCAGGC
AGGTACACATATCGTTCCTTGGGATTGGGATTGGGGATGTCGTGCGGCAT
TATTGCACGTCAGATCTCCACGTCGTACCGAAATTTCGTGTGGTCTGATT
TATTCTAATTCCATGTTTCAATGACATATTTCGCGCGTCCCTGTTAGTGG
TTGAACAGGTCCGTCCGTGCTGCACTTCCGTTGGATGCACCCGTCCACGA
AATACAACGACCCCAAATTACGAGATATCAGACGGATGAACATCGCGCGC
GTTTTCTCCCCTGTATTTCCCTACCCAGTTGCGCAGAGAGGTGGACGGGG
GGGATTATTTTTCGGCCGCGCTGGGTGTCCGTTGTTTATTGGCACAGAAT
ATTGTTAGTCGCAAACTGCCTGAAAGGTACGGGGGTGCTGTGTGCGTTCC
GGGCCTGCCTGTGTCGTTTGTACTGACTGTAAATAACGTGTTTGTTGTTT
CCTTTAGTTCGGGCATGATGTTGATAGGTGTGGGCAACCCGGGGGGGGCA
GTCTTGTGTGCGGTGTTCGTGTGTAAGTATTTCCTCGCGTTTTCGACACA
CCCAATGCTCAGTGCGTACAATGTAGTCGTATGCTTTGAGAAAAAGCACT
TCAACAATTATAATGT back to topprotein sequence of EsuBft2235_2a-0001 >EsuBft2235_2 ID=EsuBft2235_2|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MFDAAREGGGVVTQDQMLEMVTSMGAATPYSMGNVTGGAKHANKAAGPRK
WVREHCADGFADDSFYDADAHGMDLPASIHQGVHPEYLENGTAGTIDYFK
RQLLPNWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKFGECSRTSDPKS
TDLVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTKPNGIVAF
YGVGX back to topmRNA from alignment at Scaffold_228:82174..85526+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3353bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)
GTGTGTCCTGTACTACGTGTTAAAGAACGAAAAACTCAACGGCGCGAAAC
TCAGGGGCGCGACCAAGAAGAAGGTTTTCTCCGTCCCGGCTAGGAACAGC
ATCAACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTC
CGTCGGTAACGCCTACGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGA
ACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAG
ATGCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGG
CAACGTGACGGGAGGTGAGGAAGAGAGCGTGCGCAATACAGGTTGTCATA
TCGTGCTTTCGCTCCCAGCCGAAGCTCACCCACTCTCCACACCCGTGTTT
CTGAGTGTTATTATCATTATGCATATCACATCACATTGTGTTCACCCCCA
CCCCCCCATCCCCAAACACCCCTGTTGGAAATCTCTCCCCAAACGTATCA
GGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGAAATGGGTCAGAGA
GCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTACGACGCTGACGCTC
ATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGTGCACCCGGAATAT
CTCGAGAATGGAACTGCGGGAACAATCGACTACTTCAAGAGGCAGCTGTT
GCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTGTGCTACGACCGAC
AGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCTTGGGAGGACCGAG
AAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGTCAACGGACCTTGT
TCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATGGCAAGGCGGCGC
GGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCTAGCTGATGAAGTC
TGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTCTATGGCGTCGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGATTCGAGCGAAT
CTGGCTCCAGCGATGGGGAACCTGACGGGGTGAGCGAGAAGAGCGTCGAC
TCCAACTGGAGTGACGGAGACACAGATGATGGTGTTGCGGATCTCGTAAC
CGACATCTGGAACTGAGATCCGGCTACTCCTTCAGGCAGGTACACATATC
GTTCCTTGGGATTGGGATTGGGGATGTCGTGCGGCATTATTGCACGTCAG
ATCTCCACGTCGTACCGAAATTTCGTGTGGTCTGATTTATTCTAATTCCA
TGTTTCAATGACATATTTCGCGCGTCCCTGTTAGTGGTTGAACAGGTCCG
TCCGTGCTGCACTTCCGTTGGATGCACCCGTCCACGAAATACAACGACCC
CAAATTACGAGATATCAGACGGATGAACATCGCGCGCGTTTTCTCCCCTG
TATTTCCCTACCCAGTTGCGCAGAGAGGTGGACGGGGGGGATTATTTTTC
GGCCGCGCTGGGTGTCCGTTGTTTATTGGCACAGAATATTGTTAGTCGCA
AACTGCCTGAAAGGTACGGGGGTGCTGTGTGCGTTCCGGGCCTGCCTGTG
TCGTTTGTACTGACTGTAAATAACGTGTTTGTTGTTTCCTTTAGTTCGGG
CATGATGTTGATAGGTGTGGGCAACCCGGGGGGGGCAGTCTTGTGTGCGG
TGTTCGTGTGTAAGTATTTCCTCGCGTTTTCGACACACCCAATGCTCAGT
GCGTACAATGTAGTCGTATGCTTTGAGAAAAAGCACTTCAACAATTATAA
TGT back to topCoding sequence (CDS) from alignment at Scaffold_228:82174..85526+ >EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)
ATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAGAT
GCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGGCA
ACGTGACGGGAGGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGAAA
TGGGTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTACGA
CGCTGACGCTCATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGTGC
ACCCGGAATATCTCGAGAATGGAACTGCGGGAACAATCGACTACTTCAAG
AGGCAGCTGTTGCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTGTG
CTACGACCGACAGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCTTG
GGAGGACCGAGAAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGTCA
ACGGACCTTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATGG
CAAGGCGGCGCGGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCTAG
CTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTC
TATGGCGTCGGNNNN back to top
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