EsuBft2229_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2229_4a-0001
Unique Name	EsuBft2229_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:185023..186752 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV18849-PA
ProteomeId	EsuBft2229_4
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1530
Hectar predicted targeting category	other localisation
Evalue	9.78e-44
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2229_4a	EsuBft2229_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 185023..186752 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2229_4a-0001-exon	EsuBft2229_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 185023..185238 -
EsuBft2229_4a-0001-exon	agat-exon-96668	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 185439..186752 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2229_4a-0001-exon	agat-three_prime_utr-8871	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 185023..185238 -
EsuBft2229_4a-0001-exon	agat-three_prime_utr-8872	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 185439..186110 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2229_4a-0001-cds	EsuBft2229_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 186111..186752 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2229_4a-0001	EsuBft2229_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 186111..186752 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:185023..186752-
coding sequence from alignment at Scaffold_463:185023..186752-

spliced messenger RNA

>EsuBft2229_4a-0001 ID=EsuBft2229_4a-0001|Name=EsuBft2229_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1530bp|location=Sequence derived from alignment at Scaffold_463:185023..186752- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCA
TGCGGTAGCGCGGCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCA
TACAAAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTTGGCATCACC
TACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTA
CGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTCG
GAGGTACCGTAGTCAGCCATGGTAGCAAGACGCAAAGCATCGTGTTTTTT
TCTTCAACGGAAGCCGAGTACATTGCTGCCGGGGAGGGTGTCAAGGAGGC
GTTGTTTGTGCGTGCTGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTA
GCAGCACCCAGGTCCTTGAGGACAACCAGGGGGCCATAGCGTTGATGCAG
AACCCTCTCAGCTCAGGTCGCACGAAACACATCGACGTGCGGTTTCATTT
CATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGTCAAGTTTGTCCCGA
CAACGGAGCAACACGCGGACCTCTTCACCAAGGCCCTTAGCAGGGCCAGT
CTACAGTATCACCGGCGCAAGCTGATGAATTTGCCGGAGTAGCTGTAGCA
GTTTCTAGCACTTGGGAGAGGCCATGTTTTCCATGCGGGGAAAGGCGCAT
AACTGTTGCGGTCTGTGCACCAATGGCAGGAGTAGGGCGCGTTGGGAGAC
CATCGTCCGGGGGAACTTAGTTCCTCGCTTTCTTGTCTTCGCCTTGGCCT
TGCTAATAAGCGCGGCCGTTGTGATCCGCTGTGATAGCGACGGTTATTTG
TGGTGGTAGGGTTTTTCTTGAGGGGTTTTGCCCGGACACCGGGTTTCCCC
TCCATATATTGCCATGTTGGTGTTTTCTGATGTATCCAGGGGCGTTCTTG
CCCAATTGATGGTTAGTCACTTTTGAACCAGGGAGGGTGTTCGTGGGTCT
GCGAACATTGTGTTGGATACATGTGCTGGATGATTTCGTGTCACGCAGAC
TGGTAAGGTTACCGTTTGGTAGGGGGCACCGCGATGATTCACGGGGCCCC
TCCTTGCTCTGGGAGCCGCTCGTTGAGCACTACCTCTTTCGTCCGTGTGA
AGGACGGTCGTTGACCTCTGGTGAAGTTAATACATCATCAAAGCAGTCTC
ACCCGATAAATAAGTGGCATAGGCCGCAAACAAGTCCTGCTCGCAGGTTC
TCTTGTTTTTCCTTCAGGTGAACACGTCCAGGAATCCAGTATCCGCAGCC
GCCGCCGTAGTACTTACTGTACTGTGTAGCAGTAGCAGGAAATCCAGGTT
GTACCCATCCGTTGTCCAAACAAAGATTTGTGATTCCGTGAGAGAAGGAG
ATACCACCGCCGGCGAAGAGTCGAAGGCACTGTCTGCCAGATGTAGGTTG
TGAGATAGATGAAGCCACCTATGTGTTCTTAGCCTGCCCGCCCGTGAGGG
TCGTGACGAGGCCGCTGTGAGAGTGTGTGT

protein sequence of EsuBft2229_4a-0001

>EsuBft2229_4 ID=EsuBft2229_4|Name=EsuBft2229_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=213bp
MMWVSTFSRPDVSFAVHAVARHAHAPAKRHWDAIQKILGYLKGTRDLGIT
YQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVFF
SSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSTQVLEDNQGAIALMQ
NPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLFTKALSRAS
LQYHRRKLMNLPE

mRNA from alignment at Scaffold_463:185023..186752-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2229_4a-0001 ID=EsuBft2229_4a-0001|Name=EsuBft2229_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1730bp|location=Sequence derived from alignment at Scaffold_463:185023..186752- (Ectocarpus subulatus male Bft15b)
ATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCA
TGCGGTAGCGCGGCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCA
TACAAAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTTGGCATCACC
TACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTA
CGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTCG
GAGGTACCGTAGTCAGCCATGGTAGCAAGACGCAAAGCATCGTGTTTTTT
TCTTCAACGGAAGCCGAGTACATTGCTGCCGGGGAGGGTGTCAAGGAGGC
GTTGTTTGTGCGTGCTGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTA
GCAGCACCCAGGTCCTTGAGGACAACCAGGGGGCCATAGCGTTGATGCAG
AACCCTCTCAGCTCAGGTCGCACGAAACACATCGACGTGCGGTTTCATTT
CATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGTCAAGTTTGTCCCGA
CAACGGAGCAACACGCGGACCTCTTCACCAAGGCCCTTAGCAGGGCCAGT
CTACAGTATCACCGGCGCAAGCTGATGAATTTGCCGGAGTAGCTGTAGCA
GTTTCTAGCACTTGGGAGAGGCCATGTTTTCCATGCGGGGAAAGGCGCAT
AACTGTTGCGGTCTGTGCACCAATGGCAGGAGTAGGGCGCGTTGGGAGAC
CATCGTCCGGGGGAACTTAGTTCCTCGCTTTCTTGTCTTCGCCTTGGCCT
TGCTAATAAGCGCGGCCGTTGTGATCCGCTGTGATAGCGACGGTTATTTG
TGGTGGTAGGGTTTTTCTTGAGGGGTTTTGCCCGGACACCGGGTTTCCCC
TCCATATATTGCCATGTTGGTGTTTTCTGATGTATCCAGGGGCGTTCTTG
CCCAATTGATGGTTAGTCACTTTTGAACCAGGGAGGGTGTTCGTGGGTCT
GCGAACATTGTGTTGGATACATGTGCTGGATGATTTCGTGTCACGCAGAC
TGGTAAGGTTACCGTTTGGTAGGGGGCACCGCGATGATTCACGGGGCCCC
TCCTTGCTCTGGGAGCCGCTCGTTGAGCACTACCTCTTTCGTCCGTGTGA
AGGACGGTCGTTGACCTCTGGTGAAGTTAATACATCATCAAAGCAGTCTC
ACCCGATAAATAAGTGGCATAGGCCGCAAACAAGTCCTGCTCGCAGGTTC
TCTTGTTTTTCCTTCAGGTGAACACGTCCAGGAATCCAGTATCCGCAGCC
GCCGCCGTAGTACTGTACTGTGTAGCAGTAGCAGGAAATCCAGGTTGTAC
CCATCCGTTGTCCAAACAAAGATTTGTGATTCCGTGAGAGAAGGAGATAC
CACCGCCGGCGAAGAGTCGAAGGCACTGTCTGCCAGATGTAGGTTGTGAG
ATAGATGANTCTTTCCTTCAGGTGAACACGTCCAGGAATCCAGTATCCGC
AGCCGCCGCCGTAGTACTGTACTGTGTAGCAGTAGCAGGAAATCCAGGTT
GTACCCATCCGTTGTCCAAACAAAGATTTGTGATTCCGTGAGAGAAGGAG
ATACCACCGCCGGCGAAGAGTCGAAGGCACTGTCTGCCAGATGTAGGTTG
TGAGATAGATGAAGCCACCTATGTGTTCTTAGCCTGCCCGCCCGTGAGGG
TCGTGACGAGGCCGCTGTGAGAGTGTGTGT

Coding sequence (CDS) from alignment at Scaffold_463:185023..186752-

>EsuBft2229_4a-0001 ID=EsuBft2229_4a-0001|Name=EsuBft2229_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=642bp|location=Sequence derived from alignment at Scaffold_463:185023..186752- (Ectocarpus subulatus male Bft15b)
ATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCA
TGCGGTAGCGCGGCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCA
TACAAAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTTGGCATCACC
TACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTA
CGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTCG
GAGGTACCGTAGTCAGCCATGGTAGCAAGACGCAAAGCATCGTGTTTTTT
TCTTCAACGGAAGCCGAGTACATTGCTGCCGGGGAGGGTGTCAAGGAGGC
GTTGTTTGTGCGTGCTGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTA
GCAGCACCCAGGTCCTTGAGGACAACCAGGGGGCCATAGCGTTGATGCAG
AACCCTCTCAGCTCAGGTCGCACGAAACACATCGACGTGCGGTTTCATTT
CATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGTCAAGTTTGTCCCGA
CAACGGAGCAACACGCGGACCTCTTCACCAAGGCCCTTAGCAGGGCCAGT
CTACAGTATCACCGGCGCAAGCTGATGAATTTGCCGGAGTAG