EsuBft2227_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2227_2a-0001
Unique NameEsuBft2227_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:21062..21618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2227_2
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length35
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2aEsuBft2227_2aEctocarpus subulatus male Bft15bgeneScaffold_510 21062..21618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2a-0001-exonagat-exon-39840Ectocarpus subulatus male Bft15bexonScaffold_510 21062..21231 +
EsuBft2227_2a-0001-exonEsuBft2227_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 21439..21618 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2a-0001-exonagat-five_prime_utr-5718Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 21062..21101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2a-0001-cdsEsuBft2227_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 21102..21231 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2a-0001-exonagat-three_prime_utr-8862Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 21570..21618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2227_2a-0001EsuBft2227_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 21102..21569 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2227_2a-0001 ID=EsuBft2227_2a-0001|Name=EsuBft2227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_510:21062..21618+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTTGCTATTTTGTTTGAGTAATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATTTGTGTAGCTGAGA
TGTGTGTCTTCGTGAAAGAACATGTAGAGAGAGTCGTATTGGCATTCGCA
TCAAGCGCATTGCGCATTTTTCGAGTTTTGGCCCCCTTCCAGGGACCTTG
ATTTTTACCCGCGGGCACTGACGTCTTTTAATTGGTCAGCCGGTTAGCGT
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protein sequence of EsuBft2227_2a-0001

>EsuBft2227_2 ID=EsuBft2227_2|Name=EsuBft2227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MTVGSWECTIIKLGDAAYHDILASAGLEITLLLSSALCISGFLGSGEGIC
VAEMCVFVKEHVERVVLAFASSALRIFRVLAPFQGP
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mRNA from alignment at Scaffold_510:21062..21618+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2227_2a-0001 ID=EsuBft2227_2a-0001|Name=EsuBft2227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=557bp|location=Sequence derived from alignment at Scaffold_510:21062..21618+ (Ectocarpus subulatus male Bft15b)
TGTGTTGCTATTTTGTTTGAGTAATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGACGAGGGCATGTGTGGAGCTATGG
CAGTGAATGTGTTGCAATTTTGTTTGAGTAATCTAGCTGCTGACACGATG
ACTGTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATA
CAACGATATCCTGGCTTCGGTTGGGCTTGAAATTACCCTTTTGCTGTCCT
CCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATTTGTGTA
GCTGAGATGTGTGTCTTCGTGAAAGAACATGTAGAGAGAGTCGTATTGGC
ATTCGCATCAAGCGCATTGCGCATTTTTCGAGTTTTGGCCCCCTTCCAGG
GACCTTGATTTTTACCCGCGGGCACTGACGTCTTTTAATTGGTCAGCCGG
TTAGCGT
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Coding sequence (CDS) from alignment at Scaffold_510:21062..21618+

>EsuBft2227_2a-0001 ID=EsuBft2227_2a-0001|Name=EsuBft2227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_510:21062..21618+ (Ectocarpus subulatus male Bft15b)
ATGACTGTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGC
ATACCACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGT
CCTCCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATTTGT
GTAGCTGAGATGTGTGTCTTCGTGAAAGAACATGTAGAGAGAGTCGTATT
GGCATTCGCATCAAGCGCATTGCGCATTTTTCGAGTTTTGGCCCCCTTCC
AGGGACCTTGA
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