EsuBft2207_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2207_5a-0001
Unique NameEsuBft2207_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:359096..361826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft2207_5
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length198
Hectar predicted targeting categoryother localisation
Evalue2.42e-308
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_5aEsuBft2207_5aEctocarpus subulatus male Bft15bgeneScaffold_370 359096..361826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_5a-0001EsuBft2207_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 359117..361826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_5a-0001-exonagat-exon-45234Ectocarpus subulatus male Bft15bexonScaffold_370 359096..359364 -
EsuBft2207_5a-0001-exonagat-exon-45232Ectocarpus subulatus male Bft15bexonScaffold_370 359553..359806 -
EsuBft2207_5a-0001-exonEsuBft2207_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 359891..359979 -
EsuBft2207_5a-0001-exonagat-exon-45235Ectocarpus subulatus male Bft15bexonScaffold_370 360040..360735 -
EsuBft2207_5a-0001-exonagat-exon-45233Ectocarpus subulatus male Bft15bexonScaffold_370 360785..361207 -
EsuBft2207_5a-0001-exonagat-exon-45230Ectocarpus subulatus male Bft15bexonScaffold_370 361254..361466 -
EsuBft2207_5a-0001-exonagat-exon-45231Ectocarpus subulatus male Bft15bexonScaffold_370 361791..361826 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_5a-0001-exonagat-three_prime_utr-8763Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 359096..359116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_5a-0001-cdsEsuBft2207_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 359117..359364 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2207_5a-0001 ID=EsuBft2207_5a-0001|Name=EsuBft2207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1980bp|location=Sequence derived from alignment at Scaffold_370:359096..361826- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAAATTACTCAAAACGAATTCGAGTACAAGATTGAGCGGACTCG
TGGTGGAGTGAAAGAGTTCGAATCCGGTTTCAGCTTCCCGCCTCCGGCCC
CGGAGTCCCGCCGATCCTGCCCTCACTGTCCCATGACCTGCGTGAACGTG
CAAGGCCTTGGGATCCACGTGAGAACGCAGTACAGCAGTGCAAACATGTC
CAACGGCGTGCGCCTGCGGCGGATGCTACGGAAGAATCTCGAAGGGCGTG
TCGATGATGCGACGGGGGCGGCTTCGTTTGTCCTCCAGCGGAAGCGCTTT
CTCGACCTAGACTTGGAAAGCGACGGCTTCATGGACCGCGAAACCAAGGA
AACTCGTGGAGCTCCCAAGCGCAGGCGATACGACTATAGGTTCAAAGCCA
ATGCTGTCAGCCAGCTGCGCATCCTCGAGGGCAACGCCGCTTACCTCTGG
AAGAAGGAGGAGCGCACGCCTCTTCAGTACTTAGAGGATGGTCTCAAGGT
TCACTACAGCAACATCGTGAAGTGGACCAAGGACGAGAAGGCCATAGTCG
CGGCGGCAGCAGACGACGCGAACAAGAGCCCCCTCGCCAAGCAGCAGCCT
AAGCAGTGGTTTGCTGAGGCACAAAAGAGGCTTTACAAGATGTTCGTGGA
GCGGCGTAAGAGGAAGCTGAAGATGTATCCCGGGGACCAACGGGCGGCGG
CGTTCAGCGCATCCTTCAGGTGGGCACGAAAATGGGCCAAGAGGCACAAC
CTGTCCAAAAGACGTCGGACCAACCTCAAGAATAAGACTGTTGAGGAGCG
CCTACCAAAGATCCAGCGCTTCCACCGACTGTTTCGCAAGCTCCTGCAAG
AGCCGGTACGGTACAGGGCGCCCGATGAGTTGGACTTATCGGCGATTACG
ACGTTCGCAGAGAGGGAGTCCAGAGTTCCCAAGTATGGCCAATTCCTGCT
CTGGGAGCGTTGGAATGTGGATCAAGTGCCTTTGGCATTCGTAAACGGGC
TGCTCGATACGTGGGAGGAGCGAGTTGCGAAGCGTGTCGCCATCTCACAG
CCCTTTCCTGGCCTAGAGAAAAGGCAGTGCACCGTGTTAGTCATCTTTGG
TCCGGGTGAGACGACCTTGCGAATTTCGGTGATCTTCCGAGGCATGGGGA
AGCGGATCTCGCCGGTGGAGAAGGCCGCGTACCACGAGGACGTGGACGTT
TTTTTCCAGGAGAATGCTTGGGCCGACCAAAAAATCTGTATGGAGTGGGC
TAAGAGGTCCTACCTCGAAGGCCTGATGCGCGGGCGGGGTGAGCTTCCCA
AAGCGAGGTCCATTCTTATCATGGACAACTTGCACGCTCAGACGACGGAC
GAGTTCAAGGAGTATCTTCCGGTTGATGCAGGAGCCGGACGATTTATCAA
GGTGGAAGCTGGGAGGCAGATGGACATGTGGCTCGAGCAGTCGGACAACC
TCGAGAGCCAACAGGCGTTCCGATTCCGCCTTTTCGAAATGTGCGGGATG
ACCATGACTGTGGACGGCTCAGGCGATGATCGGAACGCTTTGGAGGGTTC
GGACAAGCCGTACACCATCGCAAACGATGAAGACTGTAGCGAGGACGAAG
AGGGTTTGGAGAACGGCAGAGATGAGCCTGAGGGGCGGGGGAAGGAGGGC
GATGGACGTCAGACGGTCGTGGAGGGCGCTGATTCCAGCGATGATGAAGA
CGCGGCAGAAAGCACGTCTCAAACCCAGACCGATGATCTAGCTCTTCTCG
ACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACACAAGGA
ATGGAGATCCCGACAGGCTTTCACATTCAAGAAGTTGAACCCGTTGCTCT
TGACAGATTGCTTTTGCGACGTGGAGTGTTCGTTAGGCTGGGGATTGGGT
GGTTTGGGAGGTTGATCATTCAGCAATCTCAGCAGGACGCTCGCCACCTG
TACGACTAATGTGTGCAGCTGGAGCTAGAC
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protein sequence of EsuBft2207_5a-0001

>EsuBft2207_5 ID=EsuBft2207_5|Name=EsuBft2207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=652bp
MVKITQNEFEYKIERTRGGVKEFESGFSFPPPAPESRRSCPHCPMTCVNV
QGLGIHVRTQYSSANMSNGVRLRRMLRKNLEGRVDDATGAASFVLQRKRF
LDLDLESDGFMDRETKETRGAPKRRRYDYRFKANAVSQLRILEGNAAYLW
KKEERTPLQYLEDGLKVHYSNIVKWTKDEKAIVAAAADDANKSPLAKQQP
KQWFAEAQKRLYKMFVERRKRKLKMYPGDQRAAAFSASFRWARKWAKRHN
LSKRRRTNLKNKTVEERLPKIQRFHRLFRKLLQEPVRYRAPDELDLSAIT
TFAERESRVPKYGQFLLWERWNVDQVPLAFVNGLLDTWEERVAKRVAISQ
PFPGLEKRQCTVLVIFGPGETTLRISVIFRGMGKRISPVEKAAYHEDVDV
FFQENAWADQKICMEWAKRSYLEGLMRGRGELPKARSILIMDNLHAQTTD
EFKEYLPVDAGAGRFIKVEAGRQMDMWLEQSDNLESQQAFRFRLFEMCGM
TMTVDGSGDDRNALEGSDKPYTIANDEDCSEDEEGLENGRDEPEGRGKEG
DGRQTVVEGADSSDDEDAAESTSQTQTDDLALLDDDDSMDPQDPEDETQG
MEIPTGFHIQEVEPVALDRLLLRRGVFVRLGIGWFGRLIIQQSQQDARHL
YD
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mRNA from alignment at Scaffold_370:359096..361826-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2207_5a-0001 ID=EsuBft2207_5a-0001|Name=EsuBft2207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2731bp|location=Sequence derived from alignment at Scaffold_370:359096..361826- (Ectocarpus subulatus male Bft15b)
ATGGTGAAAATTACTCAAAACGAATTCGAGTACAAGGTATTAGCCTTGGA
AGACACGTGCAGTTTTCTTCTGTTGCTGCTGTTTCTGTCTTTGATCCGAA
GGATAGTTTAGCCCCCTCCCATGCTGCCCCCTCACGGGGTCCCAGTTCGT
GGCAGATAAATGTGTTTGTGTTTTCAACCGCACTGAGACTGACGTCTTTT
CATTGGTCAGCCGGTTAGCGCGTTCGATGCTAAAAATAAAAGCACGCACA
TCCACGGAAGTTTGAATTCAACAGCGCCACAACTAAGAGCGACTGACACG
TCACATGGCTCGTTGAATCCCCTACACGGCAATTCCGCCCTTTCCAATCG
CACCGAGCAGATTGAGCGGACTCGTGGTGGAGTGAAAGAGTTCGAATCCG
GTTTCAGCTTCCCGCCTCCGGCCCCGGAGTCCCGCCGATCCTGCCCTCAC
TGTCCCATGACCTGCGTGAACGTGCAAGGCCTTGGGATCCACGTGAGAAC
GCAGTACAGCAGTGCAAACATGTCCAACGGCGTGCGCCTGCGGCGGATGC
TACGGAAGAATCTCGAAGGGCGTGTCCTTCCGTGGGAAAGCCGGGCCTGG
GCGTTGTTGGCCCTTGAAGGTCGATGATGCGACGGGGGCGGCTTCGTTTG
TCCTCCAGCGGAAGCGCTTTCTCGACCTAGACTTGGAAAGCGACGGCTTC
ATGGACCGCGAAACCAAGGAAACTCGTGGAGCTCCCAAGCGCAGGCGATA
CGACTATAGGTTCAAAGCCAATGCTGTCAGCCAGCTGCGCATCCTCGAGG
GCAACGCCGCTTACCTCTGGAAGAAGGAGGAGCGCACGCCTCTTCAGTAC
TTAGAGGATGGTCTCAAGGTTCACTACAGCAACATCGTGAAGTGGACCAA
GGACGAGAAGGCCATAGTCGCGGCGGCAGCAGACGACGCGAACAAGAGCC
CCCTCGCCAAGCAGCAGCCTAAGCAGTGGTTTGCTGAGGCACAAAAGAGG
CTTTACAAGATGTTCGTGGAGCGGCGTAAGAGGAAGCTGAAGGTATCGAC
CCTGTGGCTAACGATAAACGTTCCGGAAGCTCGTGCGAGAGATGTATCCC
GGGGACCAACGGGCGGCGGCGTTCAGCGCATCCTTCAGGTGGGCACGAAA
ATGGGCCAAGAGGCACAACCTGTCCAAAAGACGTCGGACCAACCTCAAGA
ATAAGACTGTTGAGGAGCGCCTACCAAAGATCCAGCGCTTCCACCGACTG
TTTCGCAAGCTCCTGCAAGAGCCGGTACGGTACAGGGCGCCCGATGAGTT
GGACTTATCGGCGATTACGACGTTCGCAGAGAGGGAGTCCAGAGTTCCCA
AGTATGGCCAATTCCTGCTCTGGGAGCGTTGGAATGTGGATCAAGTGCCT
TTGGCATTCGTAAACGGGCTGCTCGATACGTGGGAGGAGCGAGTTGCGAA
GCGTGTCGCCATCTCACAGCCCTTTCCTGGCCTAGAGAAAAGGCAGTGCA
CCGTGTTAGTCATCTTTGGTCCGGGTGAGACGACCTTGCGAATTTCGGTG
ATCTTCCGAGGCATGGGGAAGCGGATCTCGCCGGTGGAGAAGGCCGCGTA
CCACGAGGACGTGGACGTTTTTTTCCAGGAGAATGCTTGGGCCGACCAAA
AAATCTGTATGGAGTGGGCTAAGAGGTCCTACCTCGAAGGCCTGATGCGC
GGGCGGGGTGAGCTTCCCAAAGCGAGGTCCATTCTTATCATGGACAACTT
GCACGCTCAGACGACGGACGAGTTCAAGGAGTATCTTGTGAAGGAGTGCA
ACACTCTCGCCTAGAATGGCCCTTCTGAGTGCACGGACGAGGTGCAGCCG
GTTGATGCAGGAGCCGGACGATTTATCAAGGTGGAAGCTGGGAGGCAGAT
GGACATGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGG
CGCTGACAGCTTCTGATCGGCGGGCACTGATCACTCAGTGAATTGGAGCG
GCCATGGCAAGACTTAACAGCCAACAGGCGTTCCGATTCCGCCTTTTCGA
AATGTGCGGGATGACCATGACTGTGGACGGCTCAGGCGATGATCGGAACG
CTTTGGAGGGTTCGGACAAGCCGTACACCATCGCAAACGATGAAGACTGT
AGCGAGGACGAAGAGGGTTTGGAGAACGGCAGAGATGAGCCTGAGGGGCG
GGGGAAGGAGGGCGATGGACGTCAGACGGTCGTGGAGGGCGCTGATTCCA
GCGATGATGAAGACGCGGCAGAAAGTTTGATTTGCACTTAATCCAATCTT
TGTCATTTCCTTGTTGATGACGATGTCCATGTTGATATTTGCTTGGATTT
CGCTGATGTGCTCTTTCCGCGTTCACGACTACGAGCAAATATGATGGGTT
CATGTTGGGTTTCGGCCGTGACACCGTACTTCTTGTGGTGTTTCACGGTG
CCCCGTTCGCAGGCACGTCTCAAACCCAGACCGATGATCTAGCTCTTCTC
GACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACACAAGG
AATGGAGATCCCGACAGGCTTTCACATTCAAGAAGTTGAACCCGTTGCTC
TTGACAGATTGCTTTTGCGACGTGGAGTGTTCGTTAGGCTGGGGATTGGG
TGGTTTGGGAGGTTGATCATTCAGCAATCTCAGCAGGACGCTCGCCACCT
GTACGACTAATGTGTGCAGCTGGAGCTAGAC
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Coding sequence (CDS) from alignment at Scaffold_370:359096..361826-

>EsuBft2207_5a-0001 ID=EsuBft2207_5a-0001|Name=EsuBft2207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1959bp|location=Sequence derived from alignment at Scaffold_370:359096..361826- (Ectocarpus subulatus male Bft15b)
ATGGTGAAAATTACTCAAAACGAATTCGAGTACAAGATTGAGCGGACTCG
TGGTGGAGTGAAAGAGTTCGAATCCGGTTTCAGCTTCCCGCCTCCGGCCC
CGGAGTCCCGCCGATCCTGCCCTCACTGTCCCATGACCTGCGTGAACGTG
CAAGGCCTTGGGATCCACGTGAGAACGCAGTACAGCAGTGCAAACATGTC
CAACGGCGTGCGCCTGCGGCGGATGCTACGGAAGAATCTCGAAGGGCGTG
TCGATGATGCGACGGGGGCGGCTTCGTTTGTCCTCCAGCGGAAGCGCTTT
CTCGACCTAGACTTGGAAAGCGACGGCTTCATGGACCGCGAAACCAAGGA
AACTCGTGGAGCTCCCAAGCGCAGGCGATACGACTATAGGTTCAAAGCCA
ATGCTGTCAGCCAGCTGCGCATCCTCGAGGGCAACGCCGCTTACCTCTGG
AAGAAGGAGGAGCGCACGCCTCTTCAGTACTTAGAGGATGGTCTCAAGGT
TCACTACAGCAACATCGTGAAGTGGACCAAGGACGAGAAGGCCATAGTCG
CGGCGGCAGCAGACGACGCGAACAAGAGCCCCCTCGCCAAGCAGCAGCCT
AAGCAGTGGTTTGCTGAGGCACAAAAGAGGCTTTACAAGATGTTCGTGGA
GCGGCGTAAGAGGAAGCTGAAGATGTATCCCGGGGACCAACGGGCGGCGG
CGTTCAGCGCATCCTTCAGGTGGGCACGAAAATGGGCCAAGAGGCACAAC
CTGTCCAAAAGACGTCGGACCAACCTCAAGAATAAGACTGTTGAGGAGCG
CCTACCAAAGATCCAGCGCTTCCACCGACTGTTTCGCAAGCTCCTGCAAG
AGCCGGTACGGTACAGGGCGCCCGATGAGTTGGACTTATCGGCGATTACG
ACGTTCGCAGAGAGGGAGTCCAGAGTTCCCAAGTATGGCCAATTCCTGCT
CTGGGAGCGTTGGAATGTGGATCAAGTGCCTTTGGCATTCGTAAACGGGC
TGCTCGATACGTGGGAGGAGCGAGTTGCGAAGCGTGTCGCCATCTCACAG
CCCTTTCCTGGCCTAGAGAAAAGGCAGTGCACCGTGTTAGTCATCTTTGG
TCCGGGTGAGACGACCTTGCGAATTTCGGTGATCTTCCGAGGCATGGGGA
AGCGGATCTCGCCGGTGGAGAAGGCCGCGTACCACGAGGACGTGGACGTT
TTTTTCCAGGAGAATGCTTGGGCCGACCAAAAAATCTGTATGGAGTGGGC
TAAGAGGTCCTACCTCGAAGGCCTGATGCGCGGGCGGGGTGAGCTTCCCA
AAGCGAGGTCCATTCTTATCATGGACAACTTGCACGCTCAGACGACGGAC
GAGTTCAAGGAGTATCTTCCGGTTGATGCAGGAGCCGGACGATTTATCAA
GGTGGAAGCTGGGAGGCAGATGGACATGTGGCTCGAGCAGTCGGACAACC
TCGAGAGCCAACAGGCGTTCCGATTCCGCCTTTTCGAAATGTGCGGGATG
ACCATGACTGTGGACGGCTCAGGCGATGATCGGAACGCTTTGGAGGGTTC
GGACAAGCCGTACACCATCGCAAACGATGAAGACTGTAGCGAGGACGAAG
AGGGTTTGGAGAACGGCAGAGATGAGCCTGAGGGGCGGGGGAAGGAGGGC
GATGGACGTCAGACGGTCGTGGAGGGCGCTGATTCCAGCGATGATGAAGA
CGCGGCAGAAAGCACGTCTCAAACCCAGACCGATGATCTAGCTCTTCTCG
ACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACACAAGGA
ATGGAGATCCCGACAGGCTTTCACATTCAAGAAGTTGAACCCGTTGCTCT
TGACAGATTGCTTTTGCGACGTGGAGTGTTCGTTAGGCTGGGGATTGGGT
GGTTTGGGAGGTTGATCATTCAGCAATCTCAGCAGGACGCTCGCCACCTG
TACGACTAA
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