EsuBft2207_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2207_4a-0001
Unique Name	EsuBft2207_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:361968..365472 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2207_4
Protein domains	TMhelix
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	350
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_4a	EsuBft2207_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 361968..365472 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_4a-0001-exon	EsuBft2207_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 361968..365472 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_4a-0001-cds	EsuBft2207_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 361968..362117 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_4a-0001-exon	agat-three_prime_utr-8762	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 362118..365472 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_4a-0001	EsuBft2207_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 361968..362117 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:361968..365472+
coding sequence from alignment at Scaffold_370:361968..365472+

spliced messenger RNA

>EsuBft2207_4a-0001 ID=EsuBft2207_4a-0001|Name=EsuBft2207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3505bp|location=Sequence derived from alignment at Scaffold_370:361968..365472+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCTCCTCCATCATCGTCTTCGTCCTCCTTTCTTCCGTTTTTCT
TTCCTTCGTCTCCGTCACTCCCAATAAAATCACCCTCATTACTATTGTTG
TCGCAGAGATCCCAACCGATTGGCCCTGGTGGAAGTTGTTCGATCAGTAG
CCCGTGACGTTTGAACACATCGCGAGTTGGCATGGACGGAAAATGAGCTG
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAAAGCTTTCAGG
CGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGGCAAAAAGCTTCGTG
CGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCGGATCCTGGCTTTTGCATCGACTTGTCGATGCTTCGACCTGCGGATG
GGTTGATGATTGTTACGTCTATAAGAATGGACTTGATGCAGAGTTCCTCT
TCCTTCTCTCCTGCGTGCAATCCTGGGGGAATCACCAAATCCATCTTGTA
TAACCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGAATCATCCTCAAC
GGCGATGGGCATATGACACTCACGCAGTGTCTTGAGGACTACTCGAACCA
TCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGAG
TGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCACA
AAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGAC
CGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAAC
CCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCAA
GCGGATCAATGCTCTCTTCTTTGACATTTCCTCGCCTGCTACCTTCTGCA
CGTCTGTCTCCACCATGTGACGCACTGCTGCATGAAAAGGTTTCAAAAGG
AGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAGTTCATTTTGGTT
GAAGGTAGACGGTGGTTAATGTTCTGCGTCAGGGCTTCCATCTTCACTGG
GTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGGG
GTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTTT
TTCATGCTTGTCTTTGGGGATCATCTCCTCTAGCTTCTTGAGTGAGTCAA
TTTGAGCCAATCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTCA
ACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAAAACACCAGCGCTTG
CCCTGCCACAGAAGTCGATTCTCGAATGAGAACATTGCTCATGATTCCTA
GTCCTCCTCCACGCATGGGTAGGTGCACCTGTGCCCGAGCTGTCCCTTTG
AAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGAC
CGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTCA
TTGCCCACATCATCATGTTATCATGTTTTCTAGCGGCAGAGTTGGTGATA
GACGGTGCAATCGTCCTCAGCAGATAAAACAAACGTGGCACACTAGATAA
ACGTAGTAGTTGATAGCTGGCTTGCGGGGCGTCAAGCGTTACTTGACGGA
GTATCAATTCCGCCGGGTCACCGCGGACGAATTCGGAAATGAAATTTCTC
TGGAACTCTTCTGTCCCTACTGGGATCCCGACCATTGTCATGCCACCTTC
AGCAACTGACAGACCAATTTTCGTCAACTGTTGCTGTTCGTCGTTTGTCA
AAGCGCACATGCAAAGACCCTCCGGGAAACGCACTTTGGATTTCGGGAGA
CTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTAC
AGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCTT
GGAGGTCGTCGACGTATCCGATGAGTTTGACTCCTGGCACTGGTGGCTTG
TTGTTGAACTCTTTCATGATATCGAGGAGTCCTACACAGAAGCCGAACGC
TCCCAGATTACAGCCTCGTTGAACTCCGCGCTGTGAAAGAACAACGTCGA
TCGAACCATCTTCCATTTTGAACAAGAGTTTCTCCTTGGTTCGAGCGTAG
ATGTTCCCGAAGTATTTCACCAAGTGTGGTGTATGAGTGGCCACTGCTGG
TAAGATGGAAGATCTGCGCATGCTGTTGTAAGCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTCCCATCAAAGGAGAGAATGGTGCTGCCTTGCTG
GTGGCTGAGGGCTGCTGTGGAAGCCACTATCTCAACTCCTCCTGGAACAC
CACCTCCGAACTGGTTTGCTGCTTCGAAGATATTAGCAATCCCTCCCTTG
TACTGGCGGCAGAAGCTGCCGCTGATGATGCGACGCAAAACCCCTCCAAC
TGCAATCGGCCGTTTTTTCTCTCCCAGCGCTGAAAGGTTGGCACTGGTGT
GGAGGTTCCAAAAGAAATCCGGAAGCTCGTCTCCGTAGTAGAAGACTTTA
AAGCTGAAGTCCGCCAAGGTTTCAGTAAAAAAATCACTCATCCCACCAGC
TTGGAGATACGAAAAACGAAGACCATCAGGCCCCGGAGCACTCTGAGGGT
TGGCTTTCTTTACCGTCTGCTTGATGAACTTGATTTCGAATGGTTCATCA
GCTTCGGCGACGGAGTCGATCTTGTGCGTTTTTATACGATCTCCCGCAGC
TTTGATGCTGGAATCCCACGCAGTAGCAATATCGTCAGGATCTTCGTTAG
GGTGTAGGTTGCGAAGATGATCCAGCGTGTCGTTGTTGCGCGGTGAGGGC
GCTGGGGAGATTAAGGCACTGGCAGCTTTCGTGATGCCTCCTTTTTCATG
CGCAAGTCTTGTGGCTTTTCGTTGGCGATTGTTTTCAGTATCTGCATAAT
ACTGAAGTCGACGATTCTTCTCGTACATCGTGAGCCAGGCGATAGATTCA
CTCAGATCACCATTTGCAAAGCGGTTAAATCGGGATACCCTGTTCATCCT
TCCATCAGTCGATCCATGCAATGCTGGGGTAAGATGAAGCAACTTTGTTG
CTCGGACAAGTTGGAGTTGTCTTTCAACACGTGCTACTTCATATCTTTCC
GCTGCAAGAGGAGACAGATCTGAGGTATCTGACTTCTGCTGATCTATGTG
TACAGCTCCAAGTGCTTGCACGAAGAGGATGACGACATGTTGGAAGTGTT
TGCAA

protein sequence of EsuBft2207_4a-0001

>EsuBft2207_4 ID=EsuBft2207_4|Name=EsuBft2207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSSSIIVFVLLSSVFLSFVSVTPNKITLITIVVAEIPTDWPWWKLFDQ

mRNA from alignment at Scaffold_370:361968..365472+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2207_4a-0001 ID=EsuBft2207_4a-0001|Name=EsuBft2207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3505bp|location=Sequence derived from alignment at Scaffold_370:361968..365472+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTCCTCCATCATCGTCTTCGTCCTCCTTTCTTCCGTTTTTCT
TTCCTTCGTCTCCGTCACTCCCAATAAAATCACCCTCATTACTATTGTTG
TCGCAGAGATCCCAACCGATTGGCCCTGGTGGAAGTTGTTCGATCAGTAG
CCCGTGACGTTTGAACACATCGCGAGTTGGCATGGACGGAAAATGAGCTG
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAAAGCTTTCAGG
CGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGGCAAAAAGCTTCGTG
CGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCGGATCCTGGCTTTTGCATCGACTTGTCGATGCTTCGACCTGCGGATG
GGTTGATGATTGTTACGTCTATAAGAATGGACTTGATGCAGAGTTCCTCT
TCCTTCTCTCCTGCGTGCAATCCTGGGGGAATCACCAAATCCATCTTGTA
TAACCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGAATCATCCTCAAC
GGCGATGGGCATATGACACTCACGCAGTGTCTTGAGGACTACTCGAACCA
TCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGAG
TGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCACA
AAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGAC
CGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAAC
CCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCAA
GCGGATCAATGCTCTCTTCTTTGACATTTCCTCGCCTGCTACCTTCTGCA
CGTCTGTCTCCACCATGTGACGCACTGCTGCATGAAAAGGTTTCAAAAGG
AGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAGTTCATTTTGGTT
GAAGGTAGACGGTGGTTAATGTTCTGCGTCAGGGCTTCCATCTTCACTGG
GTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGGG
GTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTTT
TTCATGCTTGTCTTTGGGGATCATCTCCTCTAGCTTCTTGAGTGAGTCAA
TTTGAGCCAATCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTCA
ACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAAAACACCAGCGCTTG
CCCTGCCACAGAAGTCGATTCTCGAATGAGAACATTGCTCATGATTCCTA
GTCCTCCTCCACGCATGGGTAGGTGCACCTGTGCCCGAGCTGTCCCTTTG
AAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGAC
CGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTCA
TTGCCCACATCATCATGTTATCATGTTTTCTAGCGGCAGAGTTGGTGATA
GACGGTGCAATCGTCCTCAGCAGATAAAACAAACGTGGCACACTAGATAA
ACGTAGTAGTTGATAGCTGGCTTGCGGGGCGTCAAGCGTTACTTGACGGA
GTATCAATTCCGCCGGGTCACCGCGGACGAATTCGGAAATGAAATTTCTC
TGGAACTCTTCTGTCCCTACTGGGATCCCGACCATTGTCATGCCACCTTC
AGCAACTGACAGACCAATTTTCGTCAACTGTTGCTGTTCGTCGTTTGTCA
AAGCGCACATGCAAAGACCCTCCGGGAAACGCACTTTGGATTTCGGGAGA
CTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTAC
AGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCTT
GGAGGTCGTCGACGTATCCGATGAGTTTGACTCCTGGCACTGGTGGCTTG
TTGTTGAACTCTTTCATGATATCGAGGAGTCCTACACAGAAGCCGAACGC
TCCCAGATTACAGCCTCGTTGAACTCCGCGCTGTGAAAGAACAACGTCGA
TCGAACCATCTTCCATTTTGAACAAGAGTTTCTCCTTGGTTCGAGCGTAG
ATGTTCCCGAAGTATTTCACCAAGTGTGGTGTATGAGTGGCCACTGCTGG
TAAGATGGAAGATCTGCGCATGCTGTTGTAAGCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTCCCATCAAAGGAGAGAATGGTGCTGCCTTGCTG
GTGGCTGAGGGCTGCTGTGGAAGCCACTATCTCAACTCCTCCTGGAACAC
CACCTCCGAACTGGTTTGCTGCTTCGAAGATATTAGCAATCCCTCCCTTG
TACTGGCGGCAGAAGCTGCCGCTGATGATGCGACGCAAAACCCCTCCAAC
TGCAATCGGCCGTTTTTTCTCTCCCAGCGCTGAAAGGTTGGCACTGGTGT
GGAGGTTCCAAAAGAAATCCGGAAGCTCGTCTCCGTAGTAGAAGACTTTA
AAGCTGAAGTCCGCCAAGGTTTCAGTAAAAAAATCACTCATCCCACCAGC
TTGGAGATACGAAAAACGAAGACCATCAGGCCCCGGAGCACTCTGAGGGT
TGGCTTTCTTTACCGTCTGCTTGATGAACTTGATTTCGAATGGTTCATCA
GCTTCGGCGACGGAGTCGATCTTGTGCGTTTTTATACGATCTCCCGCAGC
TTTGATGCTGGAATCCCACGCAGTAGCAATATCGTCAGGATCTTCGTTAG
GGTGTAGGTTGCGAAGATGATCCAGCGTGTCGTTGTTGCGCGGTGAGGGC
GCTGGGGAGATTAAGGCACTGGCAGCTTTCGTGATGCCTCCTTTTTCATG
CGCAAGTCTTGTGGCTTTTCGTTGGCGATTGTTTTCAGTATCTGCATAAT
ACTGAAGTCGACGATTCTTCTCGTACATCGTGAGCCAGGCGATAGATTCA
CTCAGATCACCATTTGCAAAGCGGTTAAATCGGGATACCCTGTTCATCCT
TCCATCAGTCGATCCATGCAATGCTGGGGTAAGATGAAGCAACTTTGTTG
CTCGGACAAGTTGGAGTTGTCTTTCAACACGTGCTACTTCATATCTTTCC
GCTGCAAGAGGAGACAGATCTGAGGTATCTGACTTCTGCTGATCTATGTG
TACAGCTCCAAGTGCTTGCACGAAGAGGATGACGACATGTTGGAAGTGTT
TGCAA

Coding sequence (CDS) from alignment at Scaffold_370:361968..365472+

>EsuBft2207_4a-0001 ID=EsuBft2207_4a-0001|Name=EsuBft2207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_370:361968..365472+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTCCTCCATCATCGTCTTCGTCCTCCTTTCTTCCGTTTTTCT
TTCCTTCGTCTCCGTCACTCCCAATAAAATCACCCTCATTACTATTGTTG
TCGCAGAGATCCCAACCGATTGGCCCTGGTGGAAGTTGTTCGATCAGTAG