EsuBft2207_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2207_3a-0001
Unique NameEsuBft2207_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:366967..370901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft2207_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length313
Evalue2.18e-33
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3aEsuBft2207_3aEctocarpus subulatus male Bft15bgeneScaffold_370 366967..370901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3a-0001EsuBft2207_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 369941..370884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3a-0001-exonagat-exon-45225Ectocarpus subulatus male Bft15bexonScaffold_370 366967..367211 -
EsuBft2207_3a-0001-exonagat-exon-45226Ectocarpus subulatus male Bft15bexonScaffold_370 367298..367599 -
EsuBft2207_3a-0001-exonagat-exon-45228Ectocarpus subulatus male Bft15bexonScaffold_370 368022..370025 -
EsuBft2207_3a-0001-exonEsuBft2207_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 370186..370517 -
EsuBft2207_3a-0001-exonagat-exon-45229Ectocarpus subulatus male Bft15bexonScaffold_370 370578..370694 -
EsuBft2207_3a-0001-exonagat-exon-45227Ectocarpus subulatus male Bft15bexonScaffold_370 370771..370901 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3a-0001-exonagat-three_prime_utr-8759Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 366967..367211 -
EsuBft2207_3a-0001-exonagat-three_prime_utr-8760Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 367298..367599 -
EsuBft2207_3a-0001-exonagat-three_prime_utr-8761Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 368022..369940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3a-0001-cdsEsuBft2207_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 369941..370025 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2207_3a-0001-exonagat-five_prime_utr-5655Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 370885..370901 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2207_3a-0001 ID=EsuBft2207_3a-0001|Name=EsuBft2207_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3131bp|location=Sequence derived from alignment at Scaffold_370:366967..370901- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCGTACAGGGGGATCATGTCCCTGTCTAATCCCTTATCCCATGGGTTG
TTGAAAGATCTTGGCAAACTTGCAGAGTTGAAAGGACGGGGTCTGATTCT
TGACCGTCACTTCGAGACGATAAAAACTCACAACGGTATCTTCGACGAAG
CAGAGTGGATCGCGCAGATTGATGGTGAAATCCAGGGCATTACCAGCAGC
ACCCGCCTGTCCTTGTGTCGTCCCAACAAGATGCCAGCACCGCACGAGGC
GGGAAACTCCGTTGCGAAGGAGCGGTGGGACGCCATGGAGAGCTCGTGGG
GGTTGAAGCAGAACGGTATCTTCGACGAAGCAGAGTGGATCGCGCAGATT
GATGGTGAAATCCAGGGCATTACCAGCAGCACCCGCCTGTCCTTGTGTCG
TCCCAACAAGATGCCAGCACCGCACGAGGTGCTGCTGCACCTTCTCAGCA
CCCACCTGCTGCTGCAGCGGGTACCGCGAGGAGGAAGGTGGATCGAGGGA
AGAACGCCAGGGCGAGAGCTGCGAAAGGCACTTACGGCGGCAACATCTAC
AACGCGTTCTCGATTGGCAGCGGACAACCGACGTCATCTCCCCGCTCTCA
GCGAGGATGATGTTGTTCTGCGGAGCTTGGTGTGCTTGGAGGAGGGGAAG
ACGGAAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACAATGCGTCGGTGGTTGGTGGCCATGTTTGCGTGTTTGCTTGTCGTTAG
TGGTCTCTCCACCGTGTGCCTTTTTCTGTCTCCTGTTTCTTATTATTTTC
GGCCTGGTCCCTTTTTGTCCTCGCTCTTCATATTTCATTTTCTCTTTCCT
TATTAGACTATGCTGTTTCCTAATATTTTCTTCTCTTTTTCTCTTGTTCC
TTTTTTCTCTCTTTTTCCGTGCCAGATGGCCTTGTTTCTGCTTGCGTTGT
GAAGTACCAAGATTGAACCAAGGGGGTGTATCTCATTCTCTCCGGCCCGT
GATGGTGACTCCTAGTCTCAGTTGTTACCTCGCATAGCGCGCAGAGGGAG
TGGAGGACCCCAGAATATCTGTCGTTGATTTCTATTGACTTGCGGACCCC
TCGGGGCCATTTTATTTGAGTGCACCTTTTTAGGGAGGAAGGTGGGGCAT
GAAAAAGAAATAAAATGAAGAAAAAAGCCCTGGTGTTTACCCCCTCCTGT
GGAACCCTGAATGGTGACCCTGAATCGTTGTAGTTGTACGAAAAAATACA
CTAGTGTAGTACTCTACATACATACGCTGACAAGTGTAGCACACATCTCA
CCACGAAAAATAATAATGGGGGGACTGTCGCCAAAATCCTGGGTTCCCAC
GTTGAATTGACACGAAAATTTTGGACTGAGATAAATCGACACCAAAAAAA
GTGACGGTTGGCAAATTGACACGAAAAAAGGTAACGTTGGTAAATTGACA
CGAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGCCAGCAGCGGCGCAG
CCTCACGATAAAAAAAAATCAACCCCAGCTGCACCGCTGCACCGCCGGGA
AACCCAACGGTCGCGCTCCCTCATCACCGCACCCGACACGGAGCGAGGGG
ATGGCGCGCCTTGCGCGAGGTAGAATCCGCTACGAGTGGTATGATGAGTG
CATGCAGGTTCTACTGCTTGCTGTGTTGTGC
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protein sequence of EsuBft2207_3a-0001

>EsuBft2207_3 ID=EsuBft2207_3|Name=EsuBft2207_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=216bp
MSLSNPLSHGLLKDLGKLAELKGRGLILDRHFETIKTHNGIFDEAEWIAQ
IDGEIQGITSSTRLSLCRPNKMPAPHEAGNSVAKERWDAMESSWGLKQNG
IFDEAEWIAQIDGEIQGITSSTRLSLCRPNKMPAPHEVLLHLLSTHLLLQ
RVPRGGRWIEGRTPGRELRKALTAATSTTRSRLAADNRRHLPALSEDDVV
LRSLVCLEEGKTEAGX
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mRNA from alignment at Scaffold_370:366967..370901-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2207_3a-0001 ID=EsuBft2207_3a-0001|Name=EsuBft2207_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3935bp|location=Sequence derived from alignment at Scaffold_370:366967..370901- (Ectocarpus subulatus male Bft15b)
TGCCGTACAGGGGGATCATGTCCCTGTCTAATCCCTTATCCCATGGGTTG
TTGAAAGATCTTGGCAAACTTGCAGAGTTGAAAGGACGGGGTCTGATTCT
TGACCGTCACTTCGAGACGATAAAAACTCACGTGATATGTGAAGGCGGGA
AACTCCGTTGCGAAGGAGCGGTGGGACGCCATGGAGAGCTCGTGGGGGTT
GAAGCAGAACGGTATCTTCGACGAAGCAGAGTGGATCGCGCAGATTGATG
GTGAAATCCAGGGCATTACCAGCAGCACCCGCCTGTCCTTGTGTCGTCCC
AACAAGATGCCAGCACCGCACGAGGTGCTGCTGCACCTTCTCAGCACCCA
CCTGCTGCTGCAGCGGNTCACGTGATATGTGAAGGCGGGAAACTCCGTTG
CGAAGGAGCGGTGGGACGCCATGGAGAGCTCGTGGGGGTTGAAGCAGAAC
GGTATCTTCGACGAAGCAGAGTGGATCGCGCAGATTGATGGTGAAATCCA
GGGCATTACCAGCAGCACCCGCCTGTCCTTGTGTCGTCCCAACAAGATGC
CAGCACCGCACGAGGTGCTGCTGCACCTTCTCAGCACCCACCTGCTGCTG
CAGCGGGTACCGCGAGGAGGAAGGTGGATCGAGGGAAGAACGCCAGGGCG
AGAGCTGCGAAAGGCACTTACGGCGGCAACATCTACAACGCGTTCTCGAT
TGGCAGCGGACAACCGGTGAGTTCGGTTACATGTATATCCGACGCACGCT
GTTGCTTTGTTTGCTACATTTTTTTTTTTTTTAATTCCCGATAGTCTAAG
CAAGAGAAAAAATGAAAAAAAAGGTAAGGTTAGACTAAGGTTAGACTATT
AGTCTAATGTGACCCAAACGAAACAGACGTCATCTCCCCGCTCTCAGCGA
GGATGATGTTGTTCTGCGGAGCTTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTACAA
TGCGTCGGTGGTTGGTGGCCATGTTTGCGTGTTTGCTTGTCGTTAGTGGT
CTCTCCACCGTGTGCCTTTTTCTGTCTCCTGTTTCTTATTATTTTCGGCC
TGGTCCCTTTTTGTCCTCGCTCTTCATATTTCATTTTCTCTTTCCTTATT
AGACTATGCTGTTTCCTAATATTTTCTTCTCTTTTTCTCTTGTTCCTTTT
TTCTCTCTTTTTCCGTGCCAGATGGCCTTGTTTCTGCTTGCGTTGTGAAG
TACCAAGATTGAACCAAGGGGGTGTATCTCATTCTCTCCGGCCCGTGATG
GTGACTCCTAGTCTCAGTTGTTACCTCGCATAGCGCGCAGAGGGAGTGGA
GGACCCCAGAATATCTGTCGTTGATTTCTATTGACTTGCGGACCCCTCGG
GGCCATTTTATTTGAGTGCACCTTTTTAGGGTAAGTTAGCCTGCGACCAC
GGGAATCGACCGCGTCGAGTGTTGTATCAGTACGGACATACGAAGGTACT
GGATAGAGAGAGATCGGAAAGGTTTTTAATGTGAAGGCAACAAACAACAA
CAACTCTCTCGTGCGATTCACGATAATCTTTTCAAGGAAGTATTCGTTCA
GAGTGCATAGATACTTTTGCTAGCGGCATCCAAATCGGTCGCCCCGGTTG
TCTAGTGGTATCCTCGTAATCCGCTAGTTGTAGAAGTCGTGGGTGCGAAT
CCCCATGGGGTGAAACATTTACGAAATTTACGGGTGAAAGCGAAACGTTG
CTAAAAAAGCTCTCGTGAGTACCAAACTTCGACGTTAGCACCGTTGACGA
GGGAAAGGGACGGCTGGACCGCAATTTAAGCAAAAATCAGCACGCATCGC
AGGAGGAAGGTGGGGCATGAAAAAGAAATAAAATGAAGAAAAAAGCCCTG
GTGTTTACCCCCTCCTGTGGAACCCTGAATGGTGACCCTGAATCGTTGTA
GTTGTACGAAAAAATACACTAGTGTAGTACTCTACATACATACGCTGACA
AGTGTAGCACACATCTCACCACGAAAAATAATAATGGGGGGACTGTCGCC
AAAATCCTGGGTTCCCACGTTGAATTGACACGAAAATTTTGGACTGAGAT
AAATCGACACCAAAAAAAGTGACGGTTGGCAAATTGACACGAAAAAAGGT
AACGGTTGGTAATAGTCCTGTCCTCCATCGGCCGTTTTATCTTTGTGTAT
CTAAATCGAAAATAAAACGGCCGATGGAGGACAGGCCTAGTTGGTAAATT
GACACGAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGCCAGCAGCGGC
GCAGCCTCACGATAAAAAAAAATCAACCCCAGCTGCACCGCTGCACCGCC
GGGAAACCCAACGGTCGCGCTCCCTCATCACCGCACCCGACACGGAGCGA
GGGGATGGCGCGCCTTGCGCGAGGTAGAATCCGCTACGAGTGGTATGATG
AGTGCATGCAGGTTCTACTGCTTGCTGTGTTGTGC
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Coding sequence (CDS) from alignment at Scaffold_370:366967..370901-

>EsuBft2207_3a-0001 ID=EsuBft2207_3a-0001|Name=EsuBft2207_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=648bp|location=Sequence derived from alignment at Scaffold_370:366967..370901- (Ectocarpus subulatus male Bft15b)
ATGTCCCTGTCTAATCCCTTATCCCATGGGTTGTTGAAAGATCTTGGCAA
ACTTGCAGAGTTGAAAGGACGGGGTCTGATTCTTGACCGTCACTTCGAGA
CGATAAAAACTCACAACGGTATCTTCGACGAAGCAGAGTGGATCGCGCAG
ATTGATGGTGAAATCCAGGGCATTACCAGCAGCACCCGCCTGTCCTTGTG
TCGTCCCAACAAGATGCCAGCACCGCACGAGGCGGGAAACTCCGTTGCGA
AGGAGCGGTGGGACGCCATGGAGAGCTCGTGGGGGTTGAAGCAGAACGGT
ATCTTCGACGAAGCAGAGTGGATCGCGCAGATTGATGGTGAAATCCAGGG
CATTACCAGCAGCACCCGCCTGTCCTTGTGTCGTCCCAACAAGATGCCAG
CACCGCACGAGGTGCTGCTGCACCTTCTCAGCACCCACCTGCTGCTGCAG
CGGGTACCGCGAGGAGGAAGGTGGATCGAGGGAAGAACGCCAGGGCGAGA
GCTGCGAAAGGCACTTACGGCGGCAACATCTACAACGCGTTCTCGATTGG
CAGCGGACAACCGACGTCATCTCCCCGCTCTCAGCGAGGATGATGTTGTT
CTGCGGAGCTTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCGGGGNNN
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