EsuBft2207_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2207_2a-0001
Unique Name	EsuBft2207_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:371747..372825 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2207_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	80
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_2a	EsuBft2207_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 371747..372825 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_2a-0001-exon	EsuBft2207_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 371747..371766 -
EsuBft2207_2a-0001-exon	agat-exon-45224	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 372046..372825 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_2a-0001-exon	agat-three_prime_utr-8757	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 371747..371766 -
EsuBft2207_2a-0001-exon	agat-three_prime_utr-8758	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 372046..372660 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_2a-0001-cds	EsuBft2207_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 372661..372825 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2207_2a-0001	EsuBft2207_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 372661..372825 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:371747..372825-
coding sequence from alignment at Scaffold_370:371747..372825-

spliced messenger RNA

>EsuBft2207_2a-0001 ID=EsuBft2207_2a-0001|Name=EsuBft2207_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=800bp|location=Sequence derived from alignment at Scaffold_370:371747..372825- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCAGATAATTTGGGGGAGAAGGTTTGGCATTCATTGCCAGCTGG
CTATGCTGGGCACATGGAGCGTGTTCGTTCGTGTTATGTCGAAGAAGCAT
TATATATTGCGTGCAGCGTTCGGCCTCTGTACGTGCAATCGGTGACGTCA
TCATGTACCCTGTAGGGGAGGTATAAATTGGGTGCCTTGAGGTCCCCTCA
TAGTAGCAGTATCATGCGTACGTTGTTTGTTGATGGAATTGACGCGCCGG
AGTTGTACATGTTACGAAGGGAGGGGGAAGCATGGAATGGCACGGATCAG
GGCGGGGGGCGGGGGGGTGTCAAAAGGCGACATATATGGCGTATATGAGC
TTGAGCGTGTTTGTACGTCTAGTAGCACTACAGTACATGCTGCTGCAAGG
GACGACAAGGGAAAAACAAAAAAAGACAAATGAAACAAAAAATACAAAGA
GAAAATAACCAAACAAANAAAAAACAAAAAAAAAGACATATGAAACAAAA
AATACAAAGGGAAAAAAACCAAACAAATAAATATCGAAAGGAAAACATCC
TAATTTTCGGCCCCGTCAGTACCACTTGGCTGACACGGTCTCCACAGGGT
TTTCCCAGGGTGTGCACCCCGCCATGGTCCCTGAGTGGCAGGGTACGTAC
AGGGTGTGGGATCAGTACCCTCGCAGGGTACCCACCCTGCCATTGGGTCA
AGCCTGCAGCGTAGTCTTTCCAGGGTGACCTTGACAGGGTGAAATCTCCC
CACCCTGGCAGGGTAGCCGAATGGCTACGTCAGCAGTGAGCACGTACGCA

protein sequence of EsuBft2207_2a-0001

>EsuBft2207_2 ID=EsuBft2207_2|Name=EsuBft2207_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MESDNLGEKVWHSLPAGYAGHMERVRSCYVEEALYIACSVRPLYVQSVTS
SCTL

mRNA from alignment at Scaffold_370:371747..372825-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2207_2a-0001 ID=EsuBft2207_2a-0001|Name=EsuBft2207_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1079bp|location=Sequence derived from alignment at Scaffold_370:371747..372825- (Ectocarpus subulatus male Bft15b)
ATGGAATCAGATAATTTGGGGGAGAAGGTTTGGCATTCATTGCCAGCTGG
CTATGCTGGGCACATGGAGCGTGTTCGTTCGTGTTATGTCGAAGAAGCAT
TATATATTGCGTGCAGCGTTCGGCCTCTGTACGTGCAATCGGTGACGTCA
TCATGTACCCTGTAGGGGAGGTATAAATTGGGTGCCTTGAGGTCCCCTCA
TAGTAGCAGTATCATGCGTACGTTGTTTGTTGATGGAATTGACGCGCCGG
AGTTGTACATGTTACGAAGGGAGGGGGAAGCATGGAATGGCACGGATCAG
GGCGGGGGGCGGGGGGGTGTCAAAAGGCGACATATATGGCGTATATGAGC
TTGAGCGTGTTTGTACGTCTAGTAGCACTACAGTACATGCTGCTGCAAGG
GACGACAAGGGAAAAACAAAAAAAGACAAATGAAACAAAAAATACAAAGA
GAAAATAACCAAACAAANAAAAAACAAAAAAAAAGACATATGAAACAAAA
AATACAAAGGGAAAAAAACCAAACAAATAAATATCGAAAGGAAAACATCC
TAATTTTCGGCCCCGTCAGTACCACTTGGCTGACACGGTCTCCACAGGGT
TTTCCCAGGGTGTGCACCCCGCCATGGTCCCTGAGTGGCAGGGTACGTAC
AGGGTGTGGGATCAGTACCCTCGCAGGGTACCCACCCTGCCATTGGGTCA
AGCCTGCAGCGTAGTCTTTCCAGGGTGACCTTGACAGGGTGAAATCTCCC
CACCCTGGCAGGGTAGCCGAATGGCTACGTGTGTGCATAACACGTGCTCC
TGCACGTTCGTGCGCTGCTGGTCGGATAGGGGAACAGAACGGGGGAACGA
ACTATGCAAGACAGCACGGTAAGATACACAGCATGTACATAGTATGTGGT
GTCGCTTACCACGAGTGCTTGTGGCTGGTGGTTTACTGCGGTACATACAT
GCCTTGTTCCAAAGCGCTACGCAAATTCCGGCACGGGCCGGTCATTTCGA
CCTCGCTGATTGGCCAAGGGCAACGGATCCGTGAAGGAGTGCGTAAGCAA
GTGGGGAAGCAGCAGTGAGCACGTACGCA

Coding sequence (CDS) from alignment at Scaffold_370:371747..372825-

>EsuBft2207_2a-0001 ID=EsuBft2207_2a-0001|Name=EsuBft2207_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_370:371747..372825- (Ectocarpus subulatus male Bft15b)
ATGGAATCAGATAATTTGGGGGAGAAGGTTTGGCATTCATTGCCAGCTGG
CTATGCTGGGCACATGGAGCGTGTTCGTTCGTGTTATGTCGAAGAAGCAT
TATATATTGCGTGCAGCGTTCGGCCTCTGTACGTGCAATCGGTGACGTCA
TCATGTACCCTGTAG