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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2202_4 |
| Protein domains | Coil |
| Protein domains | IPR011989 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 194 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2202_4a-0001 ID=EsuBft2202_4a-0001|Name=EsuBft2202_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1941bp|location=Sequence derived from alignment at Scaffold_581:12211..14425- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACCTCATACTCCGATCTGTCTCAGAGGATTTCGGTATGTTCAGACGC
CATTCGGTTCGTCCGAGGAAAGGATGAGCACGCCTCGTCTTACCAAGAAG
TCATCAAACTCCTCCCTCCTGTCGAGTCTACGAAGCATAGAAACATCAAT
CTTATCAAAGCTTCTCTGGAGTACCTAAAGAAGAGTATTGACGACGGCGA
CAACGCGGGCCGCAAGGTGAGCATCGCGCTGTACGTGGCGATCTACATCG
GGTACGATGACGAGAAGGATGGCCTGGCGAACGAATTTTGCAAGCGCTTT
CGGGGCCTCGAAAACTACGATGTCAAAGTCATGATGAAGATCTTCAGCCT
GTCTCTTTGTACCGGAAGGACCGTTGTGCTCTTGGACAACGCCATGCTTC
CGAAGAAGAGAAACATCAAGGCGGACATCGATCACGAGCTTCGGGTGGAG
TTCATCCTTCTCTACATGTACGTCTTAAAAAGCCTTGTGCGTCGCGGCGA
GCCTCTGACCGATCTCGGATACCTTGCGGGCGTGACAGTGGCGAACATGG
AGGCTGCTTGGCTTATTTCCGGAGAACATGTTTCATCCATCGCCAACAAG
TTCTGGCCATGCTTCAACATCGAGGCGCTGAAGAAACCTCGGGTGAAAAA
CAATCTGTTCCCATCCGACGGCAAACTTCCGCGCGTGGTGATCGGACGTG
AACACATCGACTTCGACCAGGCTACAACGGACACGCTGAAAGGCGCTCTC
TTGGACAGGCCGGAGAAGGACGAGTTCCTTCAGGTCATGTGCGCCATTGT
CTCCCTCGCAGCGTGTGGGCCAGTGAAGACCTATCTCGCCCTTGAACTGG
AGCCCGTGAAAGCATTTTTCATGGATACTATCCTCCACAAGACTCAGGTG
GACCAGGTGCTGGAAGCGGTGCCCGAGATTGCGAACACTACGTTTTTCAT
CAGAAAGTTGGGTAAATACAAGGCCAAAGTCTCGGCTTTGACGCAGAAAA
TTTCTTCTATGAAGGAGACTGAAGAATCGGCCAGGCAAAAGTTCCTGGCA
TCTCTCAAGAGCAACTCGTCTCAGCAGGAAGAGTTGGAGGAGAACGAACG
CGAACTTAAGCGCCTGAGGGAATCCGTGGATATGTACAAGTACGATCAGT
CGTTTTGTAAGCAGTATCACGTGATGAAGAAGGAAGAGGAAGAGCACGAG
AACGAGGAAGAGGAGGAAGAAGAATCCAGCGAAGAGGAATACGAAAAGGA
GAAGGAAGAATCGGAGGAGAAGAAGGAACAATCCGAGAAGCAAGAAGCAT
CGGAAGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAGAGGAAGAGGAGGAG
GAGGAAGAGGAGGACCCACACAAGAACTTGAACGTTCACAAGAACCTTCA
CGTGCACAGGAACTTTCACGTGCACGAGGACCTTCACGTATTCGGCAACG
CACACGAGCATGTGGGCCACATGGATGATGTGGACGGCTTTCCTTCAGCA
CGGGCTGGAGTCACCCGACAACTTCTCGCCAAAGTTCGCGAGATACATGT
GGTCGATCAGCATCGACCAAGAATACTTGGATGCGTACAACGACATTGCC
ACGCCAATAACAAAACAACGTTCGATTCCGTGTCCCAATTGGCGGAGCAC
GTCCTCCACACCAACTGCTGGATCAACACTGTGACGTTCGGTGCTTTTCT
CAAGTCTCTCCACTGTTCCATCGCCGTGGTCGTCATCGACCATGAAATCA
AAGAACGGCTGTGTGTTCCGGATGAACTCACCCACAACAAGGAATTTTAC
ATCTGTTTGTGGCTTGAAGACGACCACTTCCAGCCAATCCAACTCGTGCA
CAAAGGCCAAGACATGGCCCTATGCGCCTCAAGAGCTTCCATACTCACTT
TCATGAACGACTGTTACCCTCAGCACCTCAAAACAATTTAG back to topprotein sequence of EsuBft2202_4a-0001 >EsuBft2202_4 ID=EsuBft2202_4|Name=EsuBft2202_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=646bp
MTSYSDLSQRISVCSDAIRFVRGKDEHASSYQEVIKLLPPVESTKHRNIN
LIKASLEYLKKSIDDGDNAGRKVSIALYVAIYIGYDDEKDGLANEFCKRF
RGLENYDVKVMMKIFSLSLCTGRTVVLLDNAMLPKKRNIKADIDHELRVE
FILLYMYVLKSLVRRGEPLTDLGYLAGVTVANMEAAWLISGEHVSSIANK
FWPCFNIEALKKPRVKNNLFPSDGKLPRVVIGREHIDFDQATTDTLKGAL
LDRPEKDEFLQVMCAIVSLAACGPVKTYLALELEPVKAFFMDTILHKTQV
DQVLEAVPEIANTTFFIRKLGKYKAKVSALTQKISSMKETEESARQKFLA
SLKSNSSQQEELEENERELKRLRESVDMYKYDQSFCKQYHVMKKEEEEHE
NEEEEEEESSEEEYEKEKEESEEKKEQSEKQEASEEEEEEEKKEEEEEEE
EEEEDPHKNLNVHKNLHVHRNFHVHEDLHVFGNAHEHVGHMDDVDGFPSA
RAGVTRQLLAKVREIHVVDQHRPRILGCVQRHCHANNKTTFDSVSQLAEH
VLHTNCWINTVTFGAFLKSLHCSIAVVVIDHEIKERLCVPDELTHNKEFY
ICLWLEDDHFQPIQLVHKGQDMALCASRASILTFMNDCYPQHLKTI back to topmRNA from alignment at Scaffold_581:12211..14425- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2202_4a-0001 ID=EsuBft2202_4a-0001|Name=EsuBft2202_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2215bp|location=Sequence derived from alignment at Scaffold_581:12211..14425- (Ectocarpus subulatus male Bft15b)
ATGACCTCATACTCCGATCTGTCTCAGAGGATTTCGGTATGTTCAGACGC
CATTCGGTTCGTCCGAGGAAAGGATGAGCACGCCTCGTCTTACCAAGAAG
TCATCAAACTCCTCCCTCCTGTCGAGTCTACGAAGCATAGAAACATCAAT
CTTATCAAAGCTTCTCTGGAGTACCTAAAGAAGAGTATTGACGACGGCGA
CAACGCGGGCCGCAAGGTGAGCATCGCGCTGTACGTGGCGATCTACATCG
GGTACGATGACGAGAAGGATGGCCTGGCGAACGAATTTTGCAAGCGCTTT
CGGGGCCTCGAAAACTACGATGTCAAAGTCATGATGAAGATCTTCAGCCT
GTCTCTTTGTACCGGAAGGACCGTTGTGCTCTTGGACAACGCCATGCTTC
CGAAGAAGAGAAACATCAAGGCGGACATCGATCACGAGCTTCGGGTGGAG
TTCATCCTTCTCTACATGTACGTCTTAAAAAGCCTTGTGCGTCGCGGCGA
GCCTCTGACCGATCTCGGATACCTTGCGGGCGTGACAGTGGCGAACATGG
AGGCTGCTTGGCTTATTTCCGGAGAACATGTTTCATCCATCGCCAACAAG
TTCTGGCCATGCTTCAACATCGAGGCGCTGAAGAAACCTCGGGTGAAAAA
CAATCTGTTCCCATCCGACGGCAAACTTCCGCGCGTGGTGATCGGACGTG
AACACATCGACTTCGACCAGGCTACAACGGACACGCTGAAAGGCGCTCTC
TTGGACAGGCCGGAGAAGGACGAGTTCCTTCAGGTCATGTGCGCCATTGT
CTCCCTCGCAGCGTGTGGGCCAGTGAAGACCTATCTCGCCCTTGAACTGG
AGCCCGTGAAAGCATTTTTCATGGATACTATCCTCCACAAGACTCAGGTG
GACCAGGTGCTGGAAGCGGTGCCCGAGATTGCGAACACTACGTTTTTCAT
CAGAAAGTTGGGTAAATACAAGGCCAAAGTCTCGGCTTTGACGCAGAAAA
TTTCTTCTATGAAGGAGACTGAAGAATCGGCCAGGCAAAAGTTCCTGGCA
TCTCTCAAGAGCAACTCGTCTCAGCAGGAAGAGTTGGAGGAGAACGAACG
CGAACTTAAGCGCCTGAGGGAATCCGTGGATATGTACAAGTACGATCAGT
CGTTTTGTAAGCAGTATCACGTGATGAAGAAGGTGAAAAGGAGCCCCGGT
CAACTGGACAAGTACTCGCTGATGAACCAACGTTAAGGAAAAAGAAAAAG
GAAGAGGAAGAGCACGAGAACGAGGAAGAGGAGGAAGAAGAATCCAGCGA
AGAGGAATACGAAAAGGAGAAGGAAGAATCGGAGGAGAAGAAGGAACAAT
CCGAGAAGCAAGAAGCATCGGAAGAGGAGGAGGAGGAGGAGAAGAAGGAG
GAAGAGGAAGAGGAGGAGGAGGAAGAGGAGGACCCACACAAGAACTTGAA
CGTTCACAAGAACCTTCACGTGCACAGGAACTTTCACGTGCACGAGGACC
TTCACGTATTCGGCAACGCACACGAGCATGTGGGCCACATGGATGATGTG
GACGGGTAGTAGACGACGCGTTTGTCGTTGTTGAATTGTAATTTTGCTTC
ATTTCATCGACATGATCGAGGACTGGTCGATTCGGTTGTTCCCCGTCGAT
GCCGATGGGTCGTGTTTTTTTTTCGTCGATCGCAACGGCGCTGAACGAGT
CCATTCACACATGGAAGCATAGTGAAAACATTAAAAAATTATTGAAGAAT
CACTGGCACAGCTTTCCTTCAGCACGGGCTGGAGTCACCCGACAACTTCT
CGCCAAAGTTCGCGAGATACATGTGGTCGATCAGCATCGACCAAGAATAC
TTGGATGCGTACAACGACATTGCCACGCCAATAACAAAACAACGTTCGAT
TCCGTGTCCCAATTGGCGGAGCACGTCCTCCACACCAACTGCTGGATCAA
CACTGTGACGTTCGGTGCTTTTCTCAAGTCTCTCCACTGTTCCATCGCCG
TGGTCGTCATCGACCATGAAATCAAAGAACGGCTGTGTGTTCCGGATGAA
CTCACCCACAACAAGGAATTTTACATCTGTTTGTGGCTTGAAGACGACCA
CTTCCAGCCAATCCAACTCGTGCACAAAGGCCAAGACATGGCCCTATGCG
CCTCAAGAGCTTCCATACTCACTTTCATGAACGACTGTTACCCTCAGCAC
CTCAAAACAATTTAG back to topCoding sequence (CDS) from alignment at Scaffold_581:12211..14425- >EsuBft2202_4a-0001 ID=EsuBft2202_4a-0001|Name=EsuBft2202_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1941bp|location=Sequence derived from alignment at Scaffold_581:12211..14425- (Ectocarpus subulatus male Bft15b)
ATGACCTCATACTCCGATCTGTCTCAGAGGATTTCGGTATGTTCAGACGC
CATTCGGTTCGTCCGAGGAAAGGATGAGCACGCCTCGTCTTACCAAGAAG
TCATCAAACTCCTCCCTCCTGTCGAGTCTACGAAGCATAGAAACATCAAT
CTTATCAAAGCTTCTCTGGAGTACCTAAAGAAGAGTATTGACGACGGCGA
CAACGCGGGCCGCAAGGTGAGCATCGCGCTGTACGTGGCGATCTACATCG
GGTACGATGACGAGAAGGATGGCCTGGCGAACGAATTTTGCAAGCGCTTT
CGGGGCCTCGAAAACTACGATGTCAAAGTCATGATGAAGATCTTCAGCCT
GTCTCTTTGTACCGGAAGGACCGTTGTGCTCTTGGACAACGCCATGCTTC
CGAAGAAGAGAAACATCAAGGCGGACATCGATCACGAGCTTCGGGTGGAG
TTCATCCTTCTCTACATGTACGTCTTAAAAAGCCTTGTGCGTCGCGGCGA
GCCTCTGACCGATCTCGGATACCTTGCGGGCGTGACAGTGGCGAACATGG
AGGCTGCTTGGCTTATTTCCGGAGAACATGTTTCATCCATCGCCAACAAG
TTCTGGCCATGCTTCAACATCGAGGCGCTGAAGAAACCTCGGGTGAAAAA
CAATCTGTTCCCATCCGACGGCAAACTTCCGCGCGTGGTGATCGGACGTG
AACACATCGACTTCGACCAGGCTACAACGGACACGCTGAAAGGCGCTCTC
TTGGACAGGCCGGAGAAGGACGAGTTCCTTCAGGTCATGTGCGCCATTGT
CTCCCTCGCAGCGTGTGGGCCAGTGAAGACCTATCTCGCCCTTGAACTGG
AGCCCGTGAAAGCATTTTTCATGGATACTATCCTCCACAAGACTCAGGTG
GACCAGGTGCTGGAAGCGGTGCCCGAGATTGCGAACACTACGTTTTTCAT
CAGAAAGTTGGGTAAATACAAGGCCAAAGTCTCGGCTTTGACGCAGAAAA
TTTCTTCTATGAAGGAGACTGAAGAATCGGCCAGGCAAAAGTTCCTGGCA
TCTCTCAAGAGCAACTCGTCTCAGCAGGAAGAGTTGGAGGAGAACGAACG
CGAACTTAAGCGCCTGAGGGAATCCGTGGATATGTACAAGTACGATCAGT
CGTTTTGTAAGCAGTATCACGTGATGAAGAAGGAAGAGGAAGAGCACGAG
AACGAGGAAGAGGAGGAAGAAGAATCCAGCGAAGAGGAATACGAAAAGGA
GAAGGAAGAATCGGAGGAGAAGAAGGAACAATCCGAGAAGCAAGAAGCAT
CGGAAGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAGAGGAAGAGGAGGAG
GAGGAAGAGGAGGACCCACACAAGAACTTGAACGTTCACAAGAACCTTCA
CGTGCACAGGAACTTTCACGTGCACGAGGACCTTCACGTATTCGGCAACG
CACACGAGCATGTGGGCCACATGGATGATGTGGACGGCTTTCCTTCAGCA
CGGGCTGGAGTCACCCGACAACTTCTCGCCAAAGTTCGCGAGATACATGT
GGTCGATCAGCATCGACCAAGAATACTTGGATGCGTACAACGACATTGCC
ACGCCAATAACAAAACAACGTTCGATTCCGTGTCCCAATTGGCGGAGCAC
GTCCTCCACACCAACTGCTGGATCAACACTGTGACGTTCGGTGCTTTTCT
CAAGTCTCTCCACTGTTCCATCGCCGTGGTCGTCATCGACCATGAAATCA
AAGAACGGCTGTGTGTTCCGGATGAACTCACCCACAACAAGGAATTTTAC
ATCTGTTTGTGGCTTGAAGACGACCACTTCCAGCCAATCCAACTCGTGCA
CAAAGGCCAAGACATGGCCCTATGCGCCTCAAGAGCTTCCATACTCACTT
TCATGAACGACTGTTACCCTCAGCACCTCAAAACAATTTAG back to top
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