EsuBft2202_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2202_3a-0001
Unique NameEsuBft2202_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:10969..11486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2202_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length35
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_3aEsuBft2202_3aEctocarpus subulatus male Bft15bgeneScaffold_581 10969..11486 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_3a-0001-exonagat-exon-611Ectocarpus subulatus male Bft15bexonScaffold_581 10969..11270 +
EsuBft2202_3a-0001-exonEsuBft2202_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 11432..11486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_3a-0001-cdsEsuBft2202_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 10969..11270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_3a-0001EsuBft2202_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 10969..11486 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=357bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTGGATCGTTGTCT
GCACTAG
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protein sequence of EsuBft2202_3a-0001

>EsuBft2202_3 ID=EsuBft2202_3|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MHVAVIVATSMATGEAERGLDKEICDRFRRLQDFDRKVMTELFHLSIVND
RVRVLLEDALVRRKKTIGIDIRHEFSVEFVLLFFGVVENVVRTGRRLGDQ
GHIDIATFANTKLDRCLH
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mRNA from alignment at Scaffold_581:10969..11486+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGTACGTGACGAGCGCGAGACTATCCTGGAGAAGCACGCGTCGTCGATC
GCCACGACGTGTGAACCTTGCTTCAAAACCAAGGAGTTGAAGAAACCGCA
CCCGAGGCCCGTCCTCTTCCCCTCGGACGACTCATCATTTCCGCGGGCGC
AGGTAGGAGGCAGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTG
GATCGTTGTCTGCACTAG
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Coding sequence (CDS) from alignment at Scaffold_581:10969..11486+

>EsuBft2202_3a-0001 ID=EsuBft2202_3a-0001|Name=EsuBft2202_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_581:10969..11486+ (Ectocarpus subulatus male Bft15b)
ATGCATGTCGCCGTAATCGTCGCGACATCGATGGCGACCGGCGAAGCCGA
GCGTGGACTGGACAAAGAGATCTGTGATCGGTTTCGGCGGCTGCAGGACT
TCGATCGGAAGGTCATGACGGAGCTTTTCCATCTCTCAATTGTGAACGAT
CGAGTGCGCGTCCTGCTCGAAGACGCACTTGTTAGGAGGAAGAAGACTAT
CGGCATCGACATCAGGCACGAGTTCTCCGTGGAATTTGTTTTACTCTTTT
TCGGTGTCGTGGAGAATGTTGTTCGCACTGGGAGACGACTGGGTGATCAG
GGGCACATCGACATCGCCACTTTCGCGAATACGAAGCTGGATCGTTGTCT
GCACTAG
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