Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft2191_5 |
| Protein domains | PTHR19446 |
| Protein domains | SSF56672 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | line-1 retrotransposable element orf2 protein os:mus musculus gn:pol pe:1 sv:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 1588 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.03e-40 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| EC | 2.7.7.49 |
| EC | 3.1.21.4 |
| GO | 0003964 |
| GO | 0009036 |
| GO | 0032199 |
| GO | 0000737 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1588bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGCTGACC
ATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACCT
GGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCACA
GGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTTC
GACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGGA
GGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGCA
ACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGTC
ATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCCA
GGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAAC
GGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCTT
CCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCCG
GGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAGA
TGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGGA
GTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTACC
GTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGGC
ACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGAC
AGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAGG
GGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACCG
ACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCTG
TTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACGGTCCCTACGGATATC
CCTGTCTCTGTGCGAGTTGTTTATGTCCTCGTGTGTCTTTGGTTTATTTC
GTTTTTGTTTTGTTTTTTTACTGGCACGTACTGCTGACCCTTGGGGTCCT
TCCGGAAGGCTACCCCCCAGGCTGGTGGTGCGCACGTTTGTTTAGTTATT
TATTTGTTTCTGATTCTTTTGTTTTCTTGTATTTTGTC back to topprotein sequence of EsuBft2191_5a-0001 >EsuBft2191_5 ID=EsuBft2191_5|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=437bp
MCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDD
GELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLV
YLKEEERRGGELLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVELT
IEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELF
DRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRV
IGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL
PKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFG
VPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGEEEASRQRAIKRGD
SGPKNSLDTAPINGAVGGRKETARREESKREETDRVT back to topmRNA from alignment at Scaffold_544:5913..7601+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1689bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGGTGTTC
CGGGAGTTCGGCTGACGGTGTCGGAGAGGAAGACGGAGACATTGATGATG
CGGGTGAAGGAGAAACAGCGACCGCCGCCGCCGCCACCGCCGCAGCTGAC
CATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACC
TGGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCAC
AGGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTT
CGACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGG
AGGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGC
AACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGT
CATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCC
AGGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAA
CGGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCT
TCCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCC
GGGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAG
ATGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGG
AGTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTAC
CGTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGG
CACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGA
CAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAG
GGGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACC
GACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCT
GTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACGGTCCCTACGGATAT
CCCTGTCTCTGTGCGAGTTGTTTATGTCCTCGTGTGTCTTTGGTTTATTT
CGTTTTTGTTTTGTTTTTTTACTGGCACGTACTGCTGACCCTTGGGGTCC
TTCCGGAAGGCTACCCCCCAGGCTGGTGGTGCGCACGTTTGTTTAGTTAT
TTATTTGTTTCTGATTCTTTTGTTTTCTTGTATTTTGTC back to topCoding sequence (CDS) from alignment at Scaffold_544:5913..7601+ >EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1314bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGCTGACC
ATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACCT
GGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCACA
GGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTTC
GACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGGA
GGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGCA
ACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGTC
ATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCCA
GGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAAC
GGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCTT
CCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCCG
GGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAGA
TGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGGA
GTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTACC
GTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGGC
ACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGAC
AGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAGG
GGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACCG
ACCGCGTGACGTGA back to top
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