EsuBft2191_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2191_5a-0001
Unique NameEsuBft2191_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:5913..7601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft2191_5
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:mus musculus gn:pol pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1588
Hectar predicted targeting categoryother localisation
Evalue1.03e-40
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_5aEsuBft2191_5aEctocarpus subulatus male Bft15bgeneScaffold_544 5913..7601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_5a-0001-exonEsuBft2191_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 5913..6356 +
EsuBft2191_5a-0001-exonagat-exon-21638Ectocarpus subulatus male Bft15bexonScaffold_544 6458..7601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_5a-0001-cdsEsuBft2191_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 5913..6356 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_5a-0001-exonagat-three_prime_utr-8670Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 7328..7601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_5a-0001EsuBft2191_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 5913..7327 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1588bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGCTGACC
ATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACCT
GGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCACA
GGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTTC
GACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGGA
GGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGCA
ACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGTC
ATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCCA
GGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAAC
GGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCTT
CCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCCG
GGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAGA
TGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGGA
GTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTACC
GTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGGC
ACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGAC
AGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAGG
GGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACCG
ACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCTG
TTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACGGTCCCTACGGATATC
CCTGTCTCTGTGCGAGTTGTTTATGTCCTCGTGTGTCTTTGGTTTATTTC
GTTTTTGTTTTGTTTTTTTACTGGCACGTACTGCTGACCCTTGGGGTCCT
TCCGGAAGGCTACCCCCCAGGCTGGTGGTGCGCACGTTTGTTTAGTTATT
TATTTGTTTCTGATTCTTTTGTTTTCTTGTATTTTGTC
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protein sequence of EsuBft2191_5a-0001

>EsuBft2191_5 ID=EsuBft2191_5|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=437bp
MCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDD
GELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLV
YLKEEERRGGELLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVELT
IEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELF
DRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRV
IGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL
PKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFG
VPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGEEEASRQRAIKRGD
SGPKNSLDTAPINGAVGGRKETARREESKREETDRVT
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mRNA from alignment at Scaffold_544:5913..7601+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1689bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGGTGTTC
CGGGAGTTCGGCTGACGGTGTCGGAGAGGAAGACGGAGACATTGATGATG
CGGGTGAAGGAGAAACAGCGACCGCCGCCGCCGCCACCGCCGCAGCTGAC
CATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACC
TGGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCAC
AGGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTT
CGACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGG
AGGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGC
AACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGT
CATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCC
AGGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAA
CGGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCT
TCCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCC
GGGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAG
ATGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGG
AGTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTAC
CGTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGG
CACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGA
CAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAG
GGGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACC
GACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCT
GTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACGGTCCCTACGGATAT
CCCTGTCTCTGTGCGAGTTGTTTATGTCCTCGTGTGTCTTTGGTTTATTT
CGTTTTTGTTTTGTTTTTTTACTGGCACGTACTGCTGACCCTTGGGGTCC
TTCCGGAAGGCTACCCCCCAGGCTGGTGGTGCGCACGTTTGTTTAGTTAT
TTATTTGTTTCTGATTCTTTTGTTTTCTTGTATTTTGTC
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Coding sequence (CDS) from alignment at Scaffold_544:5913..7601+

>EsuBft2191_5a-0001 ID=EsuBft2191_5a-0001|Name=EsuBft2191_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1314bp|location=Sequence derived from alignment at Scaffold_544:5913..7601+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTCATCGATCTGCAGAAGGCATATGACTCGGTGGACCGGGAGCT
ACTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGGGGAGATGATCGCCG
TCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGAT
GGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGTG
CTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCAGCGCCTCTCGAGA
TCATTGTCACACGGTTCAGCCAAGATGAGGTTATCGTGCGGGACCTAGTG
TACTTGAAGGAGGAGGAACGGAGGGGGGGGGAATTGCTGGACCGAGTCCG
GAGGGCGGTGTGGGGGATGCTATATGCCGACGATGCCGGCGTTGTGTCGA
AGTCCGCCGACGGCCTGGCGAGGATGATGACCATTATCGTGGAGCTGACC
ATCGAAGCAGCGGGGCAAAGGTACGCACAGACGACCGAGTTCCGATACCT
GGGCGGCCTCGTCAACGAGCAGGGCGACCTTACCCGAGAGATCAACCACA
GGAGCAAAGCAGCGTGGGCGTGCATTAAGCGATACGCCACGGAGCTCTTC
GACCGACCGGGAGCACCGTTTCGCCTCAAAGCCCGCCTGCTCCAGGCGGA
GGCAGTGGAGGCACTGCTATACGGCTGCATGACATGGTCCCCACGCCGCA
ACCACTACGGAATGCTGCAGACGACACACCACCGGCTACTCCTGCGAGTC
ATCGGCTACCGGCGCAAACGAGGCACCTACCGGCAGCTGTCATACGCCCA
GGCGCTAAAGAGGGTCGGCTGCCAGAGCGTGGAGGCCACTGTCCGTCAAC
GGCGCCTGCTCTTTGCGGGGGCCGTGGCAAGACAGCCAGACGGGCGGCTT
CCGAAACGGCTGATGTTCGGCGAGTTGGTGGGAGGGGAGGACCCGGGCCG
GGGAAACCCGGAGCAGAACTGGCTGACATGCCTGAAGGACGACATGAAGA
TGTTCGAAGCCAGGTACGGCTCCACGACCGACAAGCCGAGCGTCTTCGGA
GTCCCGAAGTTAGTCTGGAGTGAGGCGGCGAAGGTGGAGGGGGGGGTACC
GTGGCACGCGGGGGTGCTACAGGGAGCTGAGAGGTTTATGGCCTCTTGGC
ACAAGGGCGAGGAGGAGGCCAGCCGACAACGAGCCATCAAACGAGGAGAC
AGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACGGGGCGGTAGG
GGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGAGAAGAGACCG
ACCGCGTGACGTGA
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