EsuBft2191_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2191_2a-0001
Unique NameEsuBft2191_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:34892..38802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_025006-tr
ProteomeIdEsuBft2191_2
Protein domainsCoil
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length2955
Evalue7.19e-27
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3ANGE@33154|Opisthokonta,3C1UZ@33208|Metazoa,3DH8F@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00043,RC00070,RC02816
KEGG koko:K01908
KEGG ReactionR00926,R01354
KEGG Pathwayko00640,ko01100,map00640,map01100
EC6.2.1.17
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2aEsuBft2191_2aEctocarpus subulatus male Bft15bgeneScaffold_544 34892..38802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2a-0001-exonEsuBft2191_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 34892..37394 -
EsuBft2191_2a-0001-exonagat-exon-21629Ectocarpus subulatus male Bft15bexonScaffold_544 38351..38802 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2a-0001-exonagat-three_prime_utr-8667Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 34892..36917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2a-0001-cdsEsuBft2191_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 36918..37394 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2a-0001-exonagat-five_prime_utr-5601Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 38570..38802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_2a-0001EsuBft2191_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 36918..38569 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2955bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTTAC
GGATTCATCCTTCGGAGCAAACCCCGACAACGAAGATCTACCACGGGATA
TCTCTTCTTTCTGGCTGGAGGACTCATCAACTACGGTGCGAAGACTCAAA
CTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTAC
TCAGCCAGAGAGGCGGTCTACATCTCTATTTTTATGACGGAACTCAACTT
CAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATGGAAAA
TCGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGG
TGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGA
CCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCG
ACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCC
AACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCT
TTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCCACGCCATTGTCG
TGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCACC
ATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCG
GGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCG
CTACACGACTGAGCCACTACTGCGAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTC
CCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTACCCTTTC
ATTTTTTCTTTCGGCGGGTGTGGGAAGCGTTCTCCTTTATTTTTTTTATT
TTTTTGCTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTCTT
TTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGATCATTT
TGTTT
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protein sequence of EsuBft2191_2a-0001

>EsuBft2191_2 ID=EsuBft2191_2|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=232bp
MTELNFKTFGSVPINSDSTGALXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXSWKIDEDGKVLRDPTFIRQRWARWFHKLLNT
KSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLP
AELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTM
ECGNYRGISLVAHAGKVLLKVVATRLSHYCEX
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mRNA from alignment at Scaffold_544:34892..38802-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3911bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)
GTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTTAC
GGATTCATCCTTCGGAGCAAACCCCGACAACGAAGATCTACCACGGGATA
TCTCTTCTTTCTGGCTGGAGGACTCATCAACTACGGTGCGAAGACTCAAA
CTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTAC
TCAGCCAGAGAGGCGGTCTACATCTCTATTTTTATGACGGAACTCAACTT
CAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATGGAAAA
TCGTGCGTCGAGACCACCAGTAGTCGGACACGATTTGACCATCGAATACG
ATTGCAGCAACTAGTCTGCGTAGCAGTAGAAAAGAATGCATCTCTCCTTG
GCATGTATTCTCTTGTTCTAGAAATATTCCGGAAGCATGCTAGGTCAAGG
TTAACCGGGACATCTACTACGTAGAACTTGTGTAGCTTCTGGAAGCCTTC
TGGAAACTTCTGGTTCCTTCTGTAGCTTCTGAAAGCCTTTCTTTCTTTCT
GGAAACTTCTGGTTTCTTCTGTAAGCTTCTGGAAGCGTTCTAGATCAAGG
TTGTAGTTGATACTCTTCTAGAACGTAGGAGGGCTTCCAGAAATCATTCT
GGAAGCATTCTGGATCTTTCGTGTGATTGGCTTATTTGTCCGGTATTCGA
GAAGAGTGGTGCAGCCCTAAGCTCGCCCACTCCTCTCACTCCTCTTCAGT
ACCAGCAACATCAGACTCGGCAGTCAGCAACTAATAAAAGCATCTTCATA
TTTCCATTCCAAGTCTCTCGCGGTTGGAGACGCACAGAGTGTGAACCTCT
GAGGTAGGCTACACAGCCTCCTGGCACCTGCAGCATCGTACTGCTGCTAG
TGCACAGCGAAATATCGCTGACAACCCCGTCAACCTACTAGCAGTTGTGG
GATCAACAGTCTCTTGGAAGTTCACCATTTGCAACGCTGCGGTACAAAGC
GCTCTTTTTGATTAATCATTGTAAGGGAGAAGGGCCTGCAAACCCTTAAT
AGAAGTCAAGCATCAGGGGTACCGCAGTAGCTGCAACAACGCTGAAAGGA
TATGTATTGGATGCTTGGTGAGCGTGCCTTGAAGAGGAATCTCTCTCCGT
TGTTCTATACGGACAGTGTATGTATAGCAGTGGTATAATCGCGACCTCTC
GCGGAAACTCAAACCTGAACTTGTTTCATGCATATGACCGGGTGTACTAC
ACTACTAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGC
CAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGAC
CATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGC
CACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAA
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCCACGCCA
TTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGAT
GCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGG
TCGTCGCTACACGACTGAGCCACTACTGCGAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNGCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCG
TTACTCCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTAC
CCTTTCATTTTTTCTTTCGGCGGGTGTGGGAAGCGTTCTCCTTTATTTTT
TTTATTTTTTTGCTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGG
GCTCTTTTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGA
TCATTTTGTTT
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Coding sequence (CDS) from alignment at Scaffold_544:34892..38802-

>EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)
ATGACGGAACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGA
CAGCACCGGAGCGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGTCATGGAAAATCGACGAGGACGGCAAGGTCCTTCGGGACCCCA
CGTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACC
AAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCC
CACGTGCGTGCCACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAG
CGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCG
GCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGA
GTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGC
AGTGGAAGGATGCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATG
GAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGT
GCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGNNN
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