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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 7668.SPU_025006-tr |
| ProteomeId | EsuBft2191_2 |
| Protein domains | Coil |
| Protein domains | PTHR19446 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2955 |
| Evalue | 7.19e-27 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,3ANGE@33154|Opisthokonta,3C1UZ@33208|Metazoa,3DH8F@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00004,RC00043,RC00070,RC02816 |
| KEGG ko | ko:K01908 |
| KEGG Reaction | R00926,R01354 |
| KEGG Pathway | ko00640,ko01100,map00640,map01100 |
| EC | 6.2.1.17 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
| BRITE | ko00000,ko00001,ko01000,ko01004 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2955bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTTAC
GGATTCATCCTTCGGAGCAAACCCCGACAACGAAGATCTACCACGGGATA
TCTCTTCTTTCTGGCTGGAGGACTCATCAACTACGGTGCGAAGACTCAAA
CTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTAC
TCAGCCAGAGAGGCGGTCTACATCTCTATTTTTATGACGGAACTCAACTT
CAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATGGAAAA
TCGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGG
TGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGA
CCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCG
ACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCC
AACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCT
TTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCCACGCCATTGTCG
TGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCACC
ATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCG
GGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCG
CTACACGACTGAGCCACTACTGCGAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTC
CCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTACCCTTTC
ATTTTTTCTTTCGGCGGGTGTGGGAAGCGTTCTCCTTTATTTTTTTTATT
TTTTTGCTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTCTT
TTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGATCATTT
TGTTT back to topprotein sequence of EsuBft2191_2a-0001 >EsuBft2191_2 ID=EsuBft2191_2|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=232bp
MTELNFKTFGSVPINSDSTGALXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXSWKIDEDGKVLRDPTFIRQRWARWFHKLLNT
KSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLP
AELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTM
ECGNYRGISLVAHAGKVLLKVVATRLSHYCEX back to topmRNA from alignment at Scaffold_544:34892..38802- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3911bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)
GTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTTAC
GGATTCATCCTTCGGAGCAAACCCCGACAACGAAGATCTACCACGGGATA
TCTCTTCTTTCTGGCTGGAGGACTCATCAACTACGGTGCGAAGACTCAAA
CTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGCTAC
TCAGCCAGAGAGGCGGTCTACATCTCTATTTTTATGACGGAACTCAACTT
CAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATGGAAAA
TCGTGCGTCGAGACCACCAGTAGTCGGACACGATTTGACCATCGAATACG
ATTGCAGCAACTAGTCTGCGTAGCAGTAGAAAAGAATGCATCTCTCCTTG
GCATGTATTCTCTTGTTCTAGAAATATTCCGGAAGCATGCTAGGTCAAGG
TTAACCGGGACATCTACTACGTAGAACTTGTGTAGCTTCTGGAAGCCTTC
TGGAAACTTCTGGTTCCTTCTGTAGCTTCTGAAAGCCTTTCTTTCTTTCT
GGAAACTTCTGGTTTCTTCTGTAAGCTTCTGGAAGCGTTCTAGATCAAGG
TTGTAGTTGATACTCTTCTAGAACGTAGGAGGGCTTCCAGAAATCATTCT
GGAAGCATTCTGGATCTTTCGTGTGATTGGCTTATTTGTCCGGTATTCGA
GAAGAGTGGTGCAGCCCTAAGCTCGCCCACTCCTCTCACTCCTCTTCAGT
ACCAGCAACATCAGACTCGGCAGTCAGCAACTAATAAAAGCATCTTCATA
TTTCCATTCCAAGTCTCTCGCGGTTGGAGACGCACAGAGTGTGAACCTCT
GAGGTAGGCTACACAGCCTCCTGGCACCTGCAGCATCGTACTGCTGCTAG
TGCACAGCGAAATATCGCTGACAACCCCGTCAACCTACTAGCAGTTGTGG
GATCAACAGTCTCTTGGAAGTTCACCATTTGCAACGCTGCGGTACAAAGC
GCTCTTTTTGATTAATCATTGTAAGGGAGAAGGGCCTGCAAACCCTTAAT
AGAAGTCAAGCATCAGGGGTACCGCAGTAGCTGCAACAACGCTGAAAGGA
TATGTATTGGATGCTTGGTGAGCGTGCCTTGAAGAGGAATCTCTCTCCGT
TGTTCTATACGGACAGTGTATGTATAGCAGTGGTATAATCGCGACCTCTC
GCGGAAACTCAAACCTGAACTTGTTTCATGCATATGACCGGGTGTACTAC
ACTACTAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGC
CAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGAC
CATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGC
CACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAA
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCCACGCCA
TTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGAT
GCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGG
TCGTCGCTACACGACTGAGCCACTACTGCGAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNGCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCG
TTACTCCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGTTACGTTAC
CCTTTCATTTTTTCTTTCGGCGGGTGTGGGAAGCGTTCTCCTTTATTTTT
TTTATTTTTTTGCTATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGG
GCTCTTTTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGA
TCATTTTGTTT back to topCoding sequence (CDS) from alignment at Scaffold_544:34892..38802- >EsuBft2191_2a-0001 ID=EsuBft2191_2a-0001|Name=EsuBft2191_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_544:34892..38802- (Ectocarpus subulatus male Bft15b)
ATGACGGAACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGA
CAGCACCGGAGCGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGTCATGGAAAATCGACGAGGACGGCAAGGTCCTTCGGGACCCCA
CGTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACC
AAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCC
CACGTGCGTGCCACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAG
CGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCG
GCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGA
GTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGC
AGTGGAAGGATGCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATG
GAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGT
GCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGNNN back to top
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