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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7070.TC009115-PA |
| ProteomeId | EsuBft2190_8 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 816 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.29e-23 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA back to topprotein sequence of EsuBft2190_8a-0001 >EsuBft2190_8 ID=EsuBft2190_8|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=271bp
MRRLQVTRASTRGKPTSDNQIDVNLVPADLQVTMNDRGRAHAATGRMEPS
GISFTQLVEIADQAQLPCAGDTEDFAHAAEDPFTVRRAHAYVTTTHDHHG
ILEETNQVIEIPNSYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLS
SVPKGEKILATKFVFKKNLDGRFKARLVVGGHRQEPGQDCGRSNAPGWRI
GSIHMTCVIGCHENWPIYQLDVVVAFLNALFDRDVNVRPAPGTSAKNSAT
GELMVYKLERSLYGLSQSPAL back to topmRNA from alignment at Scaffold_630:121311..122126- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA back to topCoding sequence (CDS) from alignment at Scaffold_630:121311..122126- >EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA back to top
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