EsuBft2190_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2190_7a-0001
Unique Name	EsuBft2190_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:124959..127516 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2190_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	206
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2190_7a	EsuBft2190_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 124959..127516 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2190_7a-0001-exon	agat-exon-7883	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 124959..124983 +
EsuBft2190_7a-0001-exon	EsuBft2190_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 125481..127516 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2190_7a-0001-cds	EsuBft2190_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 124959..124983 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2190_7a-0001-exon	agat-three_prime_utr-8665	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 125648..127516 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2190_7a-0001	EsuBft2190_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 124959..125647 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:124959..127516+
coding sequence from alignment at Scaffold_630:124959..127516+

spliced messenger RNA

>EsuBft2190_7a-0001 ID=EsuBft2190_7a-0001|Name=EsuBft2190_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2061bp|location=Sequence derived from alignment at Scaffold_630:124959..127516+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTACGTCGCGCCGTGGGCAGACGATGGCCGCCCAGACCTCATGCC
CCGCGACTCCATCGAAGAGGACTCTTCGTCTGAAGACGAGGACAACGGTG
TCATCGTCCGGGAGACCCCCTTCCAGCGCGGTGAAGACCTAATCATCGAC
GAGACCGAGCTACCTACTTTCCTCGACAACATGGACAAATGAAGCCTGGT
CGCGCCGACCTAAGTTAGGCGACTTTAATGGCGGAGCCTAACTTGCTAAG
AACGTACTTGGGGTGACCCCTCTGGTGATGGTGCACCCGTAGCCTAGCAT
CCGTAGCCTAGAGGGGTTTGAATTCCCGTTTGTCAGGATCTCCCCGAAGT
TGATATCTGGTTTTTGGTTTGTGCCTTTTCGCAGAAACGCGGAGGTGAAT
CGGCGGGTACGCGGTCGTCGTCTTGGCTGTTTTTTTTCGGTCGTGCTCTT
TGTCGTGTTGGTCTGTTTTAATCAAGTGAAGCCAGAGGGCCAGGCACTGA
GAGTGAGGCTTGTGCCGCTTGCACACTATCAATGACCTTAGCACGTGCGT
GTGATTGACGGCAGATGATGTTTCGTATTTCTCCTGTCACCCACATTCGC
TTTTTGCTTGATTGCGTTGTTTTCGGTATGTTTTGTCTGCGGTGGAATTC
CCGTAGTTTTTCTTGGTTTTTGTGCCTTTTCGCAGACACGCGGAGGAGGT
GAATCGGCGGGTACCCGGTGTCTCGGCTGTTTTTTTCGGTAGTGCTCTTT
GTCGTGTTCGTCCGTTTTAATTAAGTGAAGCCAGAGGGTCAGGCATACGC
AAGTGTGAGCCTTTTGTGCCGCTTGCACACTATCAATGACCTTTGCACGT
GCGTGTGATTGACGGCGGATGGTGTGTCGTATATTACAACGCCCACGTAT
AGCTATGTGGCTTGATTGCGTTTTTCTCGATATTTTTTTTTTGTCATGGA
ATTCCCTTAGTTTTTTTTGGTTTGTGTACGGAAAGGGGTGTGAAGATGTT
TGGGGTTGTCCAAACGCGTATAACTTCTGTACGTCATGCTTCTACAACCC
ACATATGGAGCGTTTTAAGTGTGCGATTTGGTGGCGAGAAGAGAGGGATA
TACGAAGTATGGAGTTGGGCGATTAGTGTGGTACTTTGCACTGCACCTTT
GATTTCAGTACGGAAGGGGTGGAAGTCGACGCAGGATCCGCCACGAGGCT
TAAAGTTTTCGACAACTGCATCCCACCGACTTTACGCCCTGGCCTTGTGC
CGCACCTTGCCGAGGTGGCGCCTTGCCAAGGTGGCACCTTGTGAGCACCC
TGCAGCATGGCACATTGCAGGGTACTCCCCAGGGTTACACCCTGTAAGAC
CCACCTCGCCAGGGGTGCCGAGTTGGCACCTTGTGAGCACCCCGCAGCAT
GGCACATTGCAGGGTACTCCCCAGGGTCACAACCTGTAAGACCCACCTTG
CCAGGGGTGCCGAATGGCTACGGGTGTATGCTTTCGTGCCAAGTTTCGTG
CCAATTGGCAACGTATTCAGCGCGTTCTTGTGTTCGCCAGGAAAGTGCAG
TCGGCTCGGTAGAGGTTCCGCCGCGTCCATGGGGGCCGGTGAGTTTTCCC
ATATTTTTTTTGGGCCGATGTGGAAAAGAGGGTTTCGTCCTCAACAGACG
TTGGGGAGTTTCAACTTTTATTAAGGTGTTCTCCACATTACCCCCCCTTT
TTCGAGACTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCTTGGGGTAAC
CGGAACCCGACCGGCTGGCGGCGAGTAGAACCCCCTTTTTTTCCAACAAT
CTTCTGTGCGTGTGTGCGGGTGCACCACTTCCGCCACGCATTGCCAAAAG
TTTCGAGTTCGATAGACAATGCATCGTTTCTTGGCCCACCCACCGTTTTT
CTTTTATGATTCCGGAAGAAAATTAGGTGAGCAGCGGGTTTTGAACCCGT
GTCTTTTGCAACCAAAAACAGACACCTCACATCGCTTCGTCGACGCCACT
GTGGAAAAGAGGGTTTCGTCCTCAACAGGCGTTGGGGAGTTTCAACTTTT
ATGAAGGTGTT

protein sequence of EsuBft2190_7a-0001

>EsuBft2190_7 ID=EsuBft2190_7|Name=EsuBft2190_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=63bp
MLYVAPWADDGRPDLMPRDSIEEDSSSEDEDNGVIVRETPFQRGEDLIID
ETELPTFLDNMDK

mRNA from alignment at Scaffold_630:124959..127516+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2190_7a-0001 ID=EsuBft2190_7a-0001|Name=EsuBft2190_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2558bp|location=Sequence derived from alignment at Scaffold_630:124959..127516+ (Ectocarpus subulatus male Bft15b)
ATGCTCTACGTCGCGCCGTGGGCAGGTGCGTGCACGCGAGTTGTCCCAAC
TAACCCCATGTTTTTGAGAATGGTATTCCAGCCCTATATGACGGTCGCCC
CGGTGGATCAGTTGGTATCCCCGTAACCATCTAGCAGGCAAGTTCAGGGG
TTCGAATCCCAGCGTGTGCGACGTTTCCTCATGAAAGTGAGTTTTTTTTC
TCGCACTCGTTTCTAGCCAGTTGATAGCGCCCAGTGCGTGTGTAAACAGT
GGAAGGAGGTGGCCGATACTCCTCCCACAGTAGAAACTATCGGCGAAGCA
CCGCCGGAGGGGGGGTGAGAGGTAGAGGAGCCTTCTGTGTGACCACGGTT
CAGAGTTCGAGGCAAGATGTGTGTAGAGAGACGCCGGACACTGGAAATAA
CAGTGAAGACGAAAAAAAAAAAATGCTGAGCCCTATTCAAACACACACAC
TTTTCCGTTTTGCATGCCAATTCGATTTACACCACGCCATCAACTTCTTT
GTTTTTCTTCATATCTCCGCAGACGATGGCCGCCCAGACCTCATGCCCCG
CGACTCCATCGAAGAGGACTCTTCGTCTGAAGACGAGGACAACGGTGTCA
TCGTCCGGGAGACCCCCTTCCAGCGCGGTGAAGACCTAATCATCGACGAG
ACCGAGCTACCTACTTTCCTCGACAACATGGACAAATGAAGCCTGGTCGC
GCCGACCTAAGTTAGGCGACTTTAATGGCGGAGCCTAACTTGCTAAGAAC
GTACTTGGGGTGACCCCTCTGGTGATGGTGCACCCGTAGCCTAGCATCCG
TAGCCTAGAGGGGTTTGAATTCCCGTTTGTCAGGATCTCCCCGAAGTTGA
TATCTGGTTTTTGGTTTGTGCCTTTTCGCAGAAACGCGGAGGTGAATCGG
CGGGTACGCGGTCGTCGTCTTGGCTGTTTTTTTTCGGTCGTGCTCTTTGT
CGTGTTGGTCTGTTTTAATCAAGTGAAGCCAGAGGGCCAGGCACTGAGAG
TGAGGCTTGTGCCGCTTGCACACTATCAATGACCTTAGCACGTGCGTGTG
ATTGACGGCAGATGATGTTTCGTATTTCTCCTGTCACCCACATTCGCTTT
TTGCTTGATTGCGTTGTTTTCGGTATGTTTTGTCTGCGGTGGAATTCCCG
TAGTTTTTCTTGGTTTTTGTGCCTTTTCGCAGACACGCGGAGGAGGTGAA
TCGGCGGGTACCCGGTGTCTCGGCTGTTTTTTTCGGTAGTGCTCTTTGTC
GTGTTCGTCCGTTTTAATTAAGTGAAGCCAGAGGGTCAGGCATACGCAAG
TGTGAGCCTTTTGTGCCGCTTGCACACTATCAATGACCTTTGCACGTGCG
TGTGATTGACGGCGGATGGTGTGTCGTATATTACAACGCCCACGTATAGC
TATGTGGCTTGATTGCGTTTTTCTCGATATTTTTTTTTTGTCATGGAATT
CCCTTAGTTTTTTTTGGTTTGTGTACGGAAAGGGGTGTGAAGATGTTTGG
GGTTGTCCAAACGCGTATAACTTCTGTACGTCATGCTTCTACAACCCACA
TATGGAGCGTTTTAAGTGTGCGATTTGGTGGCGAGAAGAGAGGGATATAC
GAAGTATGGAGTTGGGCGATTAGTGTGGTACTTTGCACTGCACCTTTGAT
TTCAGTACGGAAGGGGTGGAAGTCGACGCAGGATCCGCCACGAGGCTTAA
AGTTTTCGACAACTGCATCCCACCGACTTTACGCCCTGGCCTTGTGCCGC
ACCTTGCCGAGGTGGCGCCTTGCCAAGGTGGCACCTTGTGAGCACCCTGC
AGCATGGCACATTGCAGGGTACTCCCCAGGGTTACACCCTGTAAGACCCA
CCTCGCCAGGGGTGCCGAGTTGGCACCTTGTGAGCACCCCGCAGCATGGC
ACATTGCAGGGTACTCCCCAGGGTCACAACCTGTAAGACCCACCTTGCCA
GGGGTGCCGAATGGCTACGGGTGTATGCTTTCGTGCCAAGTTTCGTGCCA
ATTGGCAACGTATTCAGCGCGTTCTTGTGTTCGCCAGGAAAGTGCAGTCG
GCTCGGTAGAGGTTCCGCCGCGTCCATGGGGGCCGGTGAGTTTTCCCATA
TTTTTTTTGGGCCGATGTGGAAAAGAGGGTTTCGTCCTCAACAGACGTTG
GGGAGTTTCAACTTTTATTAAGGTGTTCTCCACATTACCCCCCCTTTTTC
GAGACTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCTTGGGGTAACCGG
AACCCGACCGGCTGGCGGCGAGTAGAACCCCCTTTTTTTCCAACAATCTT
CTGTGCGTGTGTGCGGGTGCACCACTTCCGCCACGCATTGCCAAAAGTTT
CGAGTTCGATAGACAATGCATCGTTTCTTGGCCCACCCACCGTTTTTCTT
TTATGATTCCGGAAGAAAATTAGGTGAGCAGCGGGTTTTGAACCCGTGTC
TTTTGCAACCAAAAACAGACACCTCACATCGCTTCGTCGACGCCACTGTG
GAAAAGAGGGTTTCGTCCTCAACAGGCGTTGGGGAGTTTCAACTTTTATG
AAGGTGTT

Coding sequence (CDS) from alignment at Scaffold_630:124959..127516+

>EsuBft2190_7a-0001 ID=EsuBft2190_7a-0001|Name=EsuBft2190_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_630:124959..127516+ (Ectocarpus subulatus male Bft15b)
ATGCTCTACGTCGCGCCGTGGGCAGACGATGGCCGCCCAGACCTCATGCC
CCGCGACTCCATCGAAGAGGACTCTTCGTCTGAAGACGAGGACAACGGTG
TCATCGTCCGGGAGACCCCCTTCCAGCGCGGTGAAGACCTAATCATCGAC
GAGACCGAGCTACCTACTTTCCTCGACAACATGGACAAATGA