EsuBft2190_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2190_3a-0001
Unique NameEsuBft2190_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:154035..156030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2190_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length149
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3aEsuBft2190_3aEctocarpus subulatus male Bft15bgeneScaffold_630 154035..156030 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3a-0001-exonagat-exon-7860Ectocarpus subulatus male Bft15bexonScaffold_630 154035..154101 +
EsuBft2190_3a-0001-exonEsuBft2190_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 154603..156030 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3a-0001-exonagat-five_prime_utr-5598Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 154035..154065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3a-0001-cdsEsuBft2190_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 154066..154101 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3a-0001-exonagat-three_prime_utr-8658Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 155452..156030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_3a-0001EsuBft2190_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 154066..155451 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2190_3a-0001 ID=EsuBft2190_3a-0001|Name=EsuBft2190_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_630:154035..156030+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGGAGCGCGACAAGGATGCAGTCCGTGAGATGCATGAAGCCGCCAGAA
GATTCGGTGATATTTCGGAGTTGTACAAGGTGTACGTGAAAGAGCGTAAG
GATTCCGTGGCCGTGGAGCTCTCGTACCCCAGTGAAAGATATCAGATCTC
AAGACCGCGCGGGCAAGTCCTGCACGACATCGCCGGGTGGGCGACCAGCA
AGGCTTTGACGCATCAAGCAAGACACAATCTTTCCCAGGATTGGGTGCGT
GTCGTCCAACACAACACTCGCCGGTCCAGTCGGGAGGCGATGTTTACTAA
TGTCATGCTGAGAGATTTCGTAGCGGGAGTCGATCACAAGAACGACCTGA
AGAACGGTCCAGGACGTCTTTACCCGACGATGGATTGGGTAGAGTTTGTG
TATGCCGTGGAGAGGGGCATCTTCCACTTTCTGAAAAAACTTATCTTCCT
TGCTGCTGGCCTTGGGGGCTTGCCAGCCCAGATTTTCAAGGTTGTACGCG
AGGCGGAGGTCGTGAAAGATATGTGGGGAAACTGCTGTCCACCTGGTCCT
CCCGCCATCGACCCTAGTGTATCCCAGGAGATGTTTCTTTTCGAAGTCGG
GAAGATCCTTGACGTGCGAGTGGGTGACTACGCGAAGAGTGTAACGGAAA
ATACTTCCCTCAAGTTCACGAAGGCCGCGCTTGGTTTACGGCAACAGCTA
AACGCACAGGTCAACACAAAGGGACGGGCGGGTGGAGGGGCCGGTAGTGG
CGGAGCAGAGGGAGGTGTACAGGGGGACGGGGCCGCTGGAGGGGGTAAGG
GGGACCTTGCTACGCGCCGAAAGGGGGGGGGATGTCCAGGGCAGAGATTA
GGGACAGATGCACTACAAAACAACTTGTGCTCACGAAAGCCGCAGAGATT
CCGAAGGGCACTGTAAACTCAAGGAAAGAGGATCTCCTCGATTATCTGGA
GACGTTTGTGTGTGGGTTCAGGCAGGAACCGGTTGGAGCGGCAGGCCCCA
ACGTGACGGGGACTGGGCTAGCCAGAGGAGGATGCGGGGGGCGTGGTTGT
GAGAACGCGGGTGAGGGCAACACCTTGACAGGTAGTGGGGAGATGGCCTC
TGCCGGTGGTGATTTGATGACGGAAGAAGTTCCTACGCAGGACGGGATGG
ACCACGACGATTCCTTTCCCGACCGATTGCAATGGATATCTCACTGTCGG
TTTTGGAGGGGGCGGGTGTGTCTAGCGGGAGTGGTTCTTGATCAAGTTTC
CAAGACAGAAGGTGAAGGTTGGGCTTCGGTGGCGCCGGCTTTCGTTTTCT
CATACTGTACTTTAATTTTCAGGGATCATAACTGCCATCTGATTTGTGTG
CGTGTCGAACTTGGCGTTCCCTCACGGTTTCCCTCTTCTCACCACAAGGC
CCGCCGGTGCGTTACACACCTCAACCGCTCAGAACCATGCTCGCAATATT
TGTCTTCTGTGTTTGCTAAGGGCTACAGCTACATAGTAGTCGTCT
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protein sequence of EsuBft2190_3a-0001

>EsuBft2190_3 ID=EsuBft2190_3|Name=EsuBft2190_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MHEAARRFGDISELYKVYVKERKDSVAVELSYPSERYQISRPRGQVLHDI
AGWATSKALTHQARHNLSQDWVRVVQHNTRRSSREAMFTNVMLRDFVAGV
DHKNDLKNGPGRLYPTMDWVEFVYAVERGIFHFLKKLIFLAAGLGGLPAQ
IFKVVREAEVVKDMWGNCCPPGPPAIDPSVSQEMFLFEVGKILDVRVGDY
AKSVTENTSLKFTKAALGLRQQLNAQVNTKGRAGGGAGSGGAEGGVQGDG
AAGGGKGDLATRRKGGGCPGQRLGTDALQNNLCSRKPQRFRRAL
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mRNA from alignment at Scaffold_630:154035..156030+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2190_3a-0001 ID=EsuBft2190_3a-0001|Name=EsuBft2190_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1996bp|location=Sequence derived from alignment at Scaffold_630:154035..156030+ (Ectocarpus subulatus male Bft15b)
GGCGGAGCGCGACAAGGATGCAGTCCGTGAGATGCATGAAGCCGCCAGAA
GATTCGGTGATATTTCGGTGGGAACGGCTGTGCATATCGTTGCCTGCTCG
CAATTCCAGACATGGTATCAGCCAATGCTTCCAGTTGGCGTGAACTCGCA
TCGTCAGACCAGCATTTGTTGTTTTCTTGAGCCGAATATCACCTTAGCAT
TGAGGGCCTAGTTGGAACAAACTTTTCGCTCGCATAATTGTTGTGGGTTT
GTCCGCGGCCGTCTCCGTGACGATGAGGCAGGATGTCGAAGGGTTTGTGT
GTCATTTCCGCACCCGTGTGTGAAGAAGTCAAACTTCCACTCTCCATGTG
TACGTTCCAGCGATGATTCGAGGTTTGAGAGAGCGCGTCGTGTGTTTGAT
TCTGGGAAGGTGGTGTGTTGGAGCAACAAGCACCCTTGGCGCTTAGGTTT
AGAGTTAACCTTTCCGATTTTTTTTATTTTACTTTTTCACGGCCATGTAG
CTGAGGTACTCTCCCCGTGCCCGCGCTCCTCTCTTCGAACCGCCCCCCAT
CCCCTCTCGTTAATGCAGGAGTTGTACAAGGTGTACGTGAAAGAGCGTAA
GGATTCCGTGGCCGTGGAGCTCTCGTACCCCAGTGAAAGATATCAGATCT
CAAGACCGCGCGGGCAAGTCCTGCACGACATCGCCGGGTGGGCGACCAGC
AAGGCTTTGACGCATCAAGCAAGACACAATCTTTCCCAGGATTGGGTGCG
TGTCGTCCAACACAACACTCGCCGGTCCAGTCGGGAGGCGATGTTTACTA
ATGTCATGCTGAGAGATTTCGTAGCGGGAGTCGATCACAAGAACGACCTG
AAGAACGGTCCAGGACGTCTTTACCCGACGATGGATTGGGTAGAGTTTGT
GTATGCCGTGGAGAGGGGCATCTTCCACTTTCTGAAAAAACTTATCTTCC
TTGCTGCTGGCCTTGGGGGCTTGCCAGCCCAGATTTTCAAGGTTGTACGC
GAGGCGGAGGTCGTGAAAGATATGTGGGGAAACTGCTGTCCACCTGGTCC
TCCCGCCATCGACCCTAGTGTATCCCAGGAGATGTTTCTTTTCGAAGTCG
GGAAGATCCTTGACGTGCGAGTGGGTGACTACGCGAAGAGTGTAACGGAA
AATACTTCCCTCAAGTTCACGAAGGCCGCGCTTGGTTTACGGCAACAGCT
AAACGCACAGGTCAACACAAAGGGACGGGCGGGTGGAGGGGCCGGTAGTG
GCGGAGCAGAGGGAGGTGTACAGGGGGACGGGGCCGCTGGAGGGGGTAAG
GGGGACCTTGCTACGCGCCGAAAGGGGGGGGGATGTCCAGGGCAGAGATT
AGGGACAGATGCACTACAAAACAACTTGTGCTCACGAAAGCCGCAGAGAT
TCCGAAGGGCACTGTAAACTCAAGGAAAGAGGATCTCCTCGATTATCTGG
AGACGTTTGTGTGTGGGTTCAGGCAGGAACCGGTTGGAGCGGCAGGCCCC
AACGTGACGGGGACTGGGCTAGCCAGAGGAGGATGCGGGGGGCGTGGTTG
TGAGAACGCGGGTGAGGGCAACACCTTGACAGGTAGTGGGGAGATGGCCT
CTGCCGGTGGTGATTTGATGACGGAAGAAGTTCCTACGCAGGACGGGATG
GACCACGACGATTCCTTTCCCGACCGATTGCAATGGATATCTCACTGTCG
GTTTTGGAGGGGGCGGGTGTGTCTAGCGGGAGTGGTTCTTGATCAAGTTT
CCAAGACAGAAGGTGAAGGTTGGGCTTCGGTGGCGCCGGCTTTCGTTTTC
TCATACTGTACTTTAATTTTCAGGGATCATAACTGCCATCTGATTTGTGT
GCGTGTCGAACTTGGCGTTCCCTCACGGTTTCCCTCTTCTCACCACAAGG
CCCGCCGGTGCGTTACACACCTCAACCGCTCAGAACCATGCTCGCAATAT
TTGTCTTCTGTGTTTGCTAAGGGCTACAGCTACATAGTAGTCGTCT
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Coding sequence (CDS) from alignment at Scaffold_630:154035..156030+

>EsuBft2190_3a-0001 ID=EsuBft2190_3a-0001|Name=EsuBft2190_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_630:154035..156030+ (Ectocarpus subulatus male Bft15b)
ATGCATGAAGCCGCCAGAAGATTCGGTGATATTTCGGAGTTGTACAAGGT
GTACGTGAAAGAGCGTAAGGATTCCGTGGCCGTGGAGCTCTCGTACCCCA
GTGAAAGATATCAGATCTCAAGACCGCGCGGGCAAGTCCTGCACGACATC
GCCGGGTGGGCGACCAGCAAGGCTTTGACGCATCAAGCAAGACACAATCT
TTCCCAGGATTGGGTGCGTGTCGTCCAACACAACACTCGCCGGTCCAGTC
GGGAGGCGATGTTTACTAATGTCATGCTGAGAGATTTCGTAGCGGGAGTC
GATCACAAGAACGACCTGAAGAACGGTCCAGGACGTCTTTACCCGACGAT
GGATTGGGTAGAGTTTGTGTATGCCGTGGAGAGGGGCATCTTCCACTTTC
TGAAAAAACTTATCTTCCTTGCTGCTGGCCTTGGGGGCTTGCCAGCCCAG
ATTTTCAAGGTTGTACGCGAGGCGGAGGTCGTGAAAGATATGTGGGGAAA
CTGCTGTCCACCTGGTCCTCCCGCCATCGACCCTAGTGTATCCCAGGAGA
TGTTTCTTTTCGAAGTCGGGAAGATCCTTGACGTGCGAGTGGGTGACTAC
GCGAAGAGTGTAACGGAAAATACTTCCCTCAAGTTCACGAAGGCCGCGCT
TGGTTTACGGCAACAGCTAAACGCACAGGTCAACACAAAGGGACGGGCGG
GTGGAGGGGCCGGTAGTGGCGGAGCAGAGGGAGGTGTACAGGGGGACGGG
GCCGCTGGAGGGGGTAAGGGGGACCTTGCTACGCGCCGAAAGGGGGGGGG
ATGTCCAGGGCAGAGATTAGGGACAGATGCACTACAAAACAACTTGTGCT
CACGAAAGCCGCAGAGATTCCGAAGGGCACTGTAA
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