EsuBft2187_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2187_4a-0001
Unique Name	EsuBft2187_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:243305..245806 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2187_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	136
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a	EsuBft2187_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 243305..245806 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a-0001	EsuBft2187_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 245302..245520 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a-0001-exon	agat-exon-31847	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 243305..243818 -
EsuBft2187_4a-0001-exon	agat-exon-31848	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 244196..244326 -
EsuBft2187_4a-0001-exon	EsuBft2187_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 245089..245806 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a-0001-exon	agat-three_prime_utr-8635	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 243305..243818 -
EsuBft2187_4a-0001-exon	agat-three_prime_utr-8636	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 244196..244326 -
EsuBft2187_4a-0001-exon	agat-three_prime_utr-8637	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 245089..245301 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a-0001-cds	EsuBft2187_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 245302..245520 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2187_4a-0001-exon	agat-five_prime_utr-5585	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 245521..245806 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:243305..245806-
coding sequence from alignment at Scaffold_255:243305..245806-

spliced messenger RNA

>EsuBft2187_4a-0001 ID=EsuBft2187_4a-0001|Name=EsuBft2187_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1363bp|location=Sequence derived from alignment at Scaffold_255:243305..245806- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCAGCCCCCACAGCCCAACATCGCCAACGAACAAGAACTTCACTTTCCT
GTGCGTACACCGTGGTGGCATTATAGATGGTTTCACGTTGCCGTTTACCG
GTGCGGGTGTGTGATAATGTCCCGACGGTCGACCTGCCCAGAGTTTCAAC
CGGTCCAACCCCCGTGCACTTGACAGCGTGTCCGTAATGGGCATTCATCT
TTTGACTGAGAACTGCCGGTGATACAAGCAGCCAAGGTTGTGGGCTTTCT
ATTTCACCCGCCAGAACTCTGGTTCAAGGTTTGTGGATGGAGAACTCAGA
GATTTTCCCACCTGCACAGGCGGCGGGTTTTCGCGCCAAAAGGTTAAGAA
ATGGTCCTCTTGCGGGGTGCGGGCGAGACGTACACGGCGAACAGTCCAAA
GGTGGTGAGATTCTTTGCTTCGCTTGTGGGTGGGTTGGACCAGGACCAGG
TGGGAGGTGGAAGCACGTGGGGGACGGACCCAACTGGGCGACTCTGCAGG
AGTAGGCTGCGCAGGTCGGTGAAGGATGGGTCCATGACCGTGATCTGGTG
ACAAGGCCTCTCACCCCTGGGGAATGCGTGTGCCGTCGCTCCGACTGCGT
GTACAACCTGTTAGCTGTTTTCAAGATCCGCTGTTTGAAGGAAAAGACGG
GTTCATGGGATACTATGAAGATAGGACTAAGCTCTCGTACGGGTCGCTAT
CCATCGACAGTGTCGCAGGTTCGACACCTTCTCGAGCATGTTGGCGTCGA
AGGCAGCGTTCTGGATGCTTGCGGGGCAAGGGGCGACGCTGTGAGCAGGG
TGCTGGGAAATCATGGCTTGCGTGTCATGACGAACGACTTGAATGCTGCG
CTGCGGGCCGATTCCCATCTCGACGCTGGGTCAGATGCCTTCCGCGAGGT
GTTCCCGGAGAAGGCGGTGCGGCCGGCGTGGGTCGTCACGAGTCCACCCT
ACCGTCATGCATTCTGTATTTAGGTGCAAGCGTTGCGGGTGGCACGTGCA
GGTGTAGCCCTCAAGCTGAGACTGTCTTTCCTGGAACCAACTAAAACGCG
TGGTGAATGGCTGAAAGCGAACTCACCCAGCGCGATTGTGGTTCTGCCCC
GTGCGGTTTACCGCGGTAGGACGTACCATTTGACGGAGGCTTGGGTAATT
TGGCACATTGGTGCAAGTGCAAACACACCACGGAAGCAGGCTATTAATTT
CTCCACGTCGTGACAACATGCGGTGATAGGAAATACGAATAGGCTGCAGA
GTGGACGATGATCCGTCGTGCGTATCACATGTCCACAAGTCGACAGGTCT
GTTGGGGGGTAGTGTACCGAGCGTGCTCATGTATTTTATGGGATAACATT
GTTCGCGCCTCCC

protein sequence of EsuBft2187_4a-0001

>EsuBft2187_4 ID=EsuBft2187_4|Name=EsuBft2187_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MENSEIFPPAQAAGFRAKRLRNGPLAGCGRDVHGEQSKGGEILCFACGWV
GPGPGGRWKHVGDGPNWATLQE

mRNA from alignment at Scaffold_255:243305..245806-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2187_4a-0001 ID=EsuBft2187_4a-0001|Name=EsuBft2187_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2502bp|location=Sequence derived from alignment at Scaffold_255:243305..245806- (Ectocarpus subulatus male Bft15b)
TGCAGCCCCCACAGCCCAACATCGCCAACGAACAAGAACTTCACTTTCCT
GTGCGTACACCGTGGTGGCATTATAGATGGTTTCACGTTGCCGTTTACCG
GTGCGGGTGTGTGATAATGTCCCGACGGTCGACCTGCCCAGAGTTTCAAC
CGGTCCAACCCCCGTGCACTTGACAGCGTGTCCGTAATGGGCATTCATCT
TTTGACTGAGAACTGCCGGTGATACAAGCAGCCAAGGTTGTGGGCTTTCT
ATTTCACCCGCCAGAACTCTGGTTCAAGGTTTGTGGATGGAGAACTCAGA
GATTTTCCCACCTGCACAGGCGGCGGGTTTTCGCGCCAAAAGGTTAAGAA
ATGGTCCTCTTGCGGGGTGCGGGCGAGACGTACACGGCGAACAGTCCAAA
GGTGGTGAGATTCTTTGCTTCGCTTGTGGGTGGGTTGGACCAGGACCAGG
TGGGAGGTGGAAGCACGTGGGGGACGGACCCAACTGGGCGACTCTGCAGG
AGTAGGCTGCGCAGGTCGGTGAAGGATGGGTCCATGACCGTGATCTGGTG
ACAAGGCCTCTCACCCCTGGGGAATGCGTGTGCCGTCGCTCCGACTGCGT
GTACAACCTGTTAGCTGTTTTCAAGATCCGCTGTTTGAAGGAAAAGACGG
GTTCATGGGATACTATGAAGATAGGACTAAGCTCTCGTACGGGTCGCTAT
CCATCGACAGTGTCGCAGGTAAGAAGCTCATGCATTAGTGACGAAGCCCA
AACCCCCTCTAGGTGTTGTTGTTGTCTTCACATCACCTCGTTGTGTTGTT
GTCGTTCTGGTTTTCTTGCGGGAGAATCGTCCCGCAAAATTGCAGGTACG
TCAATCACGCACTTCGGTGCGACGGGTGTGGCTCCCGTATGTTAGTCAGA
CCAGACCTAAATGCTCAACTATGTATGGTGTATGGTGCTTGCCATGCGAT
TGCTTCCGGTAGTGTGGACGTAAATCGTTTCAGCGTTATCCCGTGCCGTC
GTATTCCTAACGCGCACCCAGCAACAGCAGCAGAGTCACCGCACTGCAGG
AATCACACACATGCATGCACACCCACCGCACTCAGCAACGCAAACTTGTA
TCCGCCAGGCATTCTCCCCACCTTGTCTCCAAGACTTGCAACACGTGCCC
CTCGACGACGATATAGTGTCGAATGTACCTACGACGGAACTGATGGCACG
TGAAGGCTGGCATATATATGTAGACGTCCCTAAGTCTATGAGCTGACATG
CCCGACGAGACACAGCAGCATTCGTTTTTTGTGGTGGCGGAAGTTTTTCA
ACGGGCTATGTACATCAACACGCAAGCTTTTGTAGGTTGGTGGTACTTGG
TGTGTGAGCGAGGAAGGCGTCCGCGTCGGTTGGACCTACACGGATATTAG
CAGGTACTGTGAGGACAAGGCTTTCCCATTAACTACCAGCTTCTTACCAC
CACCCTGCTCTCGGAACGCAAATATTGCAGGTTCGACACCTTCTCGAGCA
TGTTGGCGTCGAAGGCAGCGTTCTGGATGCTTGCGGGGCAAGGGGCGACG
CTGTGAGCAGGGTGCTGGGAAATCATGGCTTGCGTGTCATGACGAACGAC
TTGAATGCTGCGTGAGTTGGCTGGTGGTTATGATTTATATTTTTTTGGCA
AGCCGGTAAAGTAAAGCCGCAGCGGTATGCGGTATCCTACAGTGCTGATC
CGCTAGCTGAGTCAATGCTGTCTCTGATTCCCGGTAGAGGAGGAAGTTTG
CCAGTAGTCTTTTGGGCGCAGCAAGAGATCGTGCGGTCCCGTGCGCGAAG
TGGCCAGGATGACCAGCACGCGGAAGGACAGTCTTTTGAATTATTAACAC
ATGCACACAAGACGTAGTAGCCGTGGAGTCTGACGCCAAAACAGCATGCG
ATTGCGTGCCTTGGTTTCTCGACCTGTACCTAGAAATCGAACTCCGCACG
CCCTACTATCCGTGCTCTGGTGCATCGTTCATATGCAGGCTGCGGGCCGA
TTCCCATCTCGACGCTGGGTCAGATGCCTTCCGCGAGGTGTTCCCGGAGA
AGGCGGTGCGGCCGGCGTGGGTCGTCACGAGTCCACCCTACCGTCATGCA
TTCTGTATTTAGGTGCAAGCGTTGCGGGTGGCACGTGCAGGTGTAGCCCT
CAAGCTGAGACTGTCTTTCCTGGAACCAACTAAAACGCGTGGTGAATGGC
TGAAAGCGAACTCACCCAGCGCGATTGTGGTTCTGCCCCGTGCGGTTTAC
CGCGGTAGGACGTACCATTTGACGGAGGCTTGGGTAATTTGGCACATTGG
TGCAAGTGCAAACACACCACGGAAGCAGGCTATTAATTTCTCCACGTCGT
GACAACATGCGGTGATAGGAAATACGAATAGGCTGCAGAGTGGACGATGA
TCCGTCGTGCGTATCACATGTCCACAAGTCGACAGGTCTGTTGGGGGGTA
GTGTACCGAGCGTGCTCATGTATTTTATGGGATAACATTGTTCGCGCCTC
CC

Coding sequence (CDS) from alignment at Scaffold_255:243305..245806-

>EsuBft2187_4a-0001 ID=EsuBft2187_4a-0001|Name=EsuBft2187_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_255:243305..245806- (Ectocarpus subulatus male Bft15b)
ATGGAGAACTCAGAGATTTTCCCACCTGCACAGGCGGCGGGTTTTCGCGC
CAAAAGGTTAAGAAATGGTCCTCTTGCGGGGTGCGGGCGAGACGTACACG
GCGAACAGTCCAAAGGTGGTGAGATTCTTTGCTTCGCTTGTGGGTGGGTT
GGACCAGGACCAGGTGGGAGGTGGAAGCACGTGGGGGACGGACCCAACTG
GGCGACTCTGCAGGAGTAG