EsuBft2183_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2183_4a-0001
Unique NameEsuBft2183_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:711607..711984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2183_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length37
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_4aEsuBft2183_4aEctocarpus subulatus male Bft15bgeneScaffold_627 711607..711984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_4a-0001-exonEsuBft2183_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 711607..711984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_4a-0001-cdsEsuBft2183_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 711607..711984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_4a-0001EsuBft2183_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 711607..711984 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2183_4a-0001 ID=EsuBft2183_4a-0001|Name=EsuBft2183_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=378bp|location=Sequence derived from alignment at Scaffold_627:711607..711984- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGAGGTCATAGGAAAAGTGTGGGAGGACCAGGTCGAAGATGCTGC
CAACAAGAAGATCAAGATGGCTGAAAGAAAACGGAGGCAGGCGCTGCAAA
AGCAGAGCAAGACGAAAAACCCGAGAATAGCCGAGCAGATCGAGATACCG
ACTATCCCGAACCGTGATGAGCTCCTCGACAAGGACATGCCCGACAGCTT
TCTCCCTCCGTACTGCTTTACGTGGCTGTTGTACGGACCGCTGGCCGCAA
ACCCGGAAGAGGACATATCGTTCACGGCCTCCAACGGCCCTGACGTTCAA
GGGGTGGGCAGCGGAGGCCTCAGCGACGACTCCTACGAGGAGCTCAACAA
CTACGGCGACGACGACAACGACGACNNN
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protein sequence of EsuBft2183_4a-0001

>EsuBft2183_4 ID=EsuBft2183_4|Name=EsuBft2183_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MLEVIGKVWEDQVEDAANKKIKMAERKRRQALQKQSKTKNPRIAEQIEIP
TIPNRDELLDKDMPDSFLPPYCFTWLLYGPLAANPEEDISFTASNGPDVQ
GVGSGGLSDDSYEELNNYGDDDNDDX
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mRNA from alignment at Scaffold_627:711607..711984-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2183_4a-0001 ID=EsuBft2183_4a-0001|Name=EsuBft2183_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=378bp|location=Sequence derived from alignment at Scaffold_627:711607..711984- (Ectocarpus subulatus male Bft15b)
ATGCTGGAGGTCATAGGAAAAGTGTGGGAGGACCAGGTCGAAGATGCTGC
CAACAAGAAGATCAAGATGGCTGAAAGAAAACGGAGGCAGGCGCTGCAAA
AGCAGAGCAAGACGAAAAACCCGAGAATAGCCGAGCAGATCGAGATACCG
ACTATCCCGAACCGTGATGAGCTCCTCGACAAGGACATGCCCGACAGCTT
TCTCCCTCCGTACTGCTTTACGTGGCTGTTGTACGGACCGCTGGCCGCAA
ACCCGGAAGAGGACATATCGTTCACGGCCTCCAACGGCCCTGACGTTCAA
GGGGTGGGCAGCGGAGGCCTCAGCGACGACTCCTACGAGGAGCTCAACAA
CTACGGCGACGACGACAACGACGACNNN
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Coding sequence (CDS) from alignment at Scaffold_627:711607..711984-

>EsuBft2183_4a-0001 ID=EsuBft2183_4a-0001|Name=EsuBft2183_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_627:711607..711984- (Ectocarpus subulatus male Bft15b)
ATGCTGGAGGTCATAGGAAAAGTGTGGGAGGACCAGGTCGAAGATGCTGC
CAACAAGAAGATCAAGATGGCTGAAAGAAAACGGAGGCAGGCGCTGCAAA
AGCAGAGCAAGACGAAAAACCCGAGAATAGCCGAGCAGATCGAGATACCG
ACTATCCCGAACCGTGATGAGCTCCTCGACAAGGACATGCCCGACAGCTT
TCTCCCTCCGTACTGCTTTACGTGGCTGTTGTACGGACCGCTGGCCGCAA
ACCCGGAAGAGGACATATCGTTCACGGCCTCCAACGGCCCTGACGTTCAA
GGGGTGGGCAGCGGAGGCCTCAGCGACGACTCCTACGAGGAGCTCAACAA
CTACGGCGACGACGACAACGACGACNNN
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