EsuBft2183_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2183_3a-0001
Unique NameEsuBft2183_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:716383..719155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2183_3
Protein domainsIPR016621
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length118
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionUncharacterised conserved protein UCP014543
Ec32 orthologEc-20_001430.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3aEsuBft2183_3aEctocarpus subulatus male Bft15bgeneScaffold_627 716383..719155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3a-0001EsuBft2183_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 716574..718892 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3a-0001-exonagat-exon-101662Ectocarpus subulatus male Bft15bexonScaffold_627 716383..716887 +
EsuBft2183_3a-0001-exonagat-exon-101661Ectocarpus subulatus male Bft15bexonScaffold_627 717598..717772 +
EsuBft2183_3a-0001-exonEsuBft2183_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 718183..718280 +
EsuBft2183_3a-0001-exonagat-exon-101660Ectocarpus subulatus male Bft15bexonScaffold_627 718748..719155 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3a-0001-exonagat-five_prime_utr-5579Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 716383..716573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3a-0001-cdsEsuBft2183_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 716574..716887 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2183_3a-0001-exonagat-three_prime_utr-8632Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 718893..719155 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2183_3a-0001 ID=EsuBft2183_3a-0001|Name=EsuBft2183_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1186bp|location=Sequence derived from alignment at Scaffold_627:716383..719155+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCACCGCTGAGCCCATGTTTTACGTACAGGATACAAGACCGCCATCGCG
TCGAGCAATAGTGACGGCTGTCCATACGTAGCAGGGCGTGGTACAAGGAT
AGGGCTTGTTTTCTGCGAATACAAGCAGGTGGTATCGTCCCGCTTGCCGA
AAACCCGGAGGTTGGAGGTTGTGGGGACAACCCACACACACATGATGCAC
AGGCTTGGCCAAATCATCACGGCTGCTGCTACTGCTGCTGCGGTGGCAAC
CACAACCTCTGCGTTCGTTGTCGCCCCTGCAGCACTACGTGATGGAACGA
GGCTAAGCGCTTCTCTCGATTCTCCTCGGGGATGGGCTTGTAATCATGAG
ACAGCAGCGGCATACAGCAGCGGTTGCCTTCGGAGGTCAGGCGCGTGTGA
AGGAGGAGGTGGGCGCATCACGATGATGATGTCTGGCCCACCGCCAGGCA
GAGGGAAATTCGTAAAGATGGGAGGGACAGAGGATGCGCAGAGCTTCGGG
CCAAGGTGTATTCTCGCAAGTGGCCTCTCCCTGGAGGAGCGCGGGGCAAT
ACGCTCGATTCTTGACGACGAGGATCAAGACCGGGAGGACAGAACACCTT
TTGTGGCGCATACCTTGGAAATAGCGGAGAAGAGGGTGGGAGACGTCCTG
ACCGATGCGCCGATGATCGGTCTGCTTCAGGAGAAACAAGAGGCCAGGGA
TGCCTCGCCAGAACCGTCTTCGCCGGTGATTCTGATCAGCGGTTTCACCA
ATCCGGAACTGAGAGACTTTGTCACACGGTTTCGCAGTGAAACGGGGGTT
CGCGCTGCATTTGCCAAGGCTGTCCCAAACGCCATGACTAAGTCGGTGGC
TAGATTGTGCGGGGAGATTGCTCAAGATCACGCTGATGCTCTCGCGGGCA
AACTGTCCAGCGGCAAAGAATGAGCGAACAGAGCATGTGGCATCGTACAA
GTTGGTACCATCTTTAATTCGAGCGAAGCGAGATTGCTAATCTTGCCTGT
GGAGACAGCGCAATACAGGCTCCATCCAGAAAAATGAGTTTGTACAGTTT
GTCCGCTTAATCTAGGTTTTAGAGTTGCGATTTGATTTTAGACTACTACA
GGGGTCAGCAGATAGATGCACTTTTTTTTTTCGAAGCACACAGCGGATTT
CAGCAGAGAACACACGCACTGTGGGCGACACCACAC
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protein sequence of EsuBft2183_3a-0001

>EsuBft2183_3 ID=EsuBft2183_3|Name=EsuBft2183_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=243bp
MMHRLGQIITAAATAAAVATTTSAFVVAPAALRDGTRLSASLDSPRGWAC
NHETAAAYSSGCLRRSGACEGGGGRITMMMSGPPPGRGKFVKMGGTEDAQ
SFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPFVAHTLEIAEKRVG
DVLTDAPMIGLLQEKQEARDASPEPSSPVILISGFTNPELRDFVTRFRSE
TGVRAAFAKAVPNAMTKSVARLCGEIAQDHADALAGKLSSGKE
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mRNA from alignment at Scaffold_627:716383..719155+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2183_3a-0001 ID=EsuBft2183_3a-0001|Name=EsuBft2183_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2773bp|location=Sequence derived from alignment at Scaffold_627:716383..719155+ (Ectocarpus subulatus male Bft15b)
AGCACCGCTGAGCCCATGTTTTACGTACAGGATACAAGACCGCCATCGCG
TCGAGCAATAGTGACGGCTGTCCATACGTAGCAGGGCGTGGTACAAGGAT
AGGGCTTGTTTTCTGCGAATACAAGCAGGTGGTATCGTCCCGCTTGCCGA
AAACCCGGAGGTTGGAGGTTGTGGGGACAACCCACACACACATGATGCAC
AGGCTTGGCCAAATCATCACGGCTGCTGCTACTGCTGCTGCGGTGGCAAC
CACAACCTCTGCGTTCGTTGTCGCCCCTGCAGCACTACGTGATGGAACGA
GGCTAAGCGCTTCTCTCGATTCTCCTCGGGGATGGGCTTGTAATCATGAG
ACAGCAGCGGCATACAGCAGCGGTTGCCTTCGGAGGTCAGGCGCGTGTGA
AGGAGGAGGTGGGCGCATCACGATGATGATGTCTGGCCCACCGCCAGGCA
GAGGGAAATTCGTAAAGATGGGAGGGACAGAGGATGCGCAGAGCTTCGGG
CCAAGGTGAAGCTATAGACCGGGGAAGTCGGCGTGACGACGTCGTGAGTT
CACAGCAATGTATTCAAATGGTAGATACAACCTCAACATTCAGATTTTTG
GCTTGAAGTTCCAGCCGTCCGCGGTTGGTTGCATGCAAGGGTGTTCGTAA
CCTTTGTTTGACGTGTGATTTGCTCAGCAGAACAGGCGGGGTCGCATCTT
GAATACAAGCACTTACGGCCTTGCACCGAGGCAGCCTATGAAGATGTTCT
TTCAGCGGTTCTGTGGGACAACTATCACACCGTACGTAGGGTGTGAGGAC
TAAATTTACGAAAATACAGCACCTTGATATGGAGCATCATGTTCCGTATA
CCGCAAGATCTTGGGAGCGAGGGGATGGATGGACTTCTGCCGGCTTTCGA
AACCCTCGTAATATCGCCAACCTTCTACAATACACAGGTCTCCTCGCTGA
CGTGAAGGTCAGCAATTTTGGGTGCGTACTAAAGTGCATTTGACCAAAAA
CGTAGAGAGTCCTATCTGACTCGCACACTCTGACCGCTGTGCATCCATTG
CTGTGGCTGGCCAATACCGTTGGCCAACCACCCTAGGGGTAACTCAGGCC
CTACGAAACTCCCAGAAGGACCGCGTGTAGAGCAGGAGCAACCACAACTC
ATCTGTGGAGATTCCGTGGAATCCGAGCAGTGAAGTTTTGTCTTCGCCTG
CTCTCGGGTATTCAGGTGTATTCTCGCAAGTGGCCTCTCCCTGGAGGAGC
GCGGGGCAATACGCTCGATTCTTGACGACGAGGATCAAGACCGGGAGGAC
AGAACACCTTTTGTGGCGCATACCTTGGAAATAGCGGAGAAGAGGGTGGG
AGACGTCCTGACCGATGCGCCGATGATCGGTCTGCTTCAGGTAGCGACAA
AAAAGTGTCTAATCCGGATTTTTGTTTGTACAGCAGCACTCAATTTGTTG
CACTTCTTCGTGCAGACTGGACGAATCGCCACCCGGCAGGAGACAGGCCT
CTGCCGCATGTGTCTTCCAGACCAGTAGTCCGGTATGCATGTGCATATGA
TGCTCATGTTTCCTCATGCTCACCGCCAAGGAAGTGTGTCCTGAAAAGTC
GACAACAGTTTGGCGATTGCGGATGGCATATGTACCCGCGAAGCCATGCT
GGAAGGTGTCATCGTGGTCACCAAAAACGATATCCGTTTCAGGCAGATCC
GTATCTTTTCGAGTCTCCGTGACTACTCAGTAAATCCAGAATCACTACTG
CAGTCGTTACGTTCCACCCGTAATCCCTGCCGTGGTCTGTGAACGCCCAG
GAGAAACAAGAGGCCAGGGATGCCTCGCCAGAACCGTCTTCGCCGGTGAT
TCTGATCAGCGGTTTCACCAATCCGGAACTGAGAGACTTTGTCACACGGT
AGGGAACCAGTGTTTCCTCACATCACACATTACTTTTAGTTTGGTGCTGA
GGCACATATCCGGGAGCGTCGACTTGATTTTGCTTTAGGGTCGCGTTCGT
GGTGTTTGGTTTTCCTTCCTAGCTCCTCCGCCCGGTAAAAGCAGACTGCA
CACATTTTGGTGTTTTTCAGTGTTTAGTCGAACACGGTCCCACCTACAAT
TTTCTATCGCACGTGGCAACACCCGAACTGTCGATTTCAATCCATGACGA
CGATGAGAGGTGTAGTTCGGATCAATTTGTCTCGTGCGTCTGGCCCACAG
TTCACGCCCGACGATTATAGTGAGAGAGGCAAATGCGTCATGTAACTACT
CTTGCGTTGCCAGCGCCGTCGACCACCATCGTGCATGAGAAACATACTGG
AGGTTCTGATCGCCTCCTCTGTTTGCCGTTTGCTGCCACTGGGTGTTCGA
GGACTGCCGTAACAGGTTTCGCAGTGAAACGGGGGTTCGCGCTGCATTTG
CCAAGGCTGTCCCAAACGCCATGACTAAGTCGGTGGCTAGATTGTGCGGG
GAGATTGCTCAAGATCACGCTGATGCTCTCGCGGGCAAACTGTCCAGCGG
CAAAGAATGAGCGAACAGAGCATGTGGCATCGTACAAGTTGGTACCATCT
TTAATTCGAGCGAAGCGAGATTGCTAATCTTGCCTGTGGAGACAGCGCAA
TACAGGCTCCATCCAGAAAAATGAGTTTGTACAGTTTGTCCGCTTAATCT
AGGTTTTAGAGTTGCGATTTGATTTTAGACTACTACAGGGGTCAGCAGAT
AGATGCACTTTTTTTTTTCGAAGCACACAGCGGATTTCAGCAGAGAACAC
ACGCACTGTGGGCGACACCACAC
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Coding sequence (CDS) from alignment at Scaffold_627:716383..719155+

>EsuBft2183_3a-0001 ID=EsuBft2183_3a-0001|Name=EsuBft2183_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=732bp|location=Sequence derived from alignment at Scaffold_627:716383..719155+ (Ectocarpus subulatus male Bft15b)
ATGATGCACAGGCTTGGCCAAATCATCACGGCTGCTGCTACTGCTGCTGC
GGTGGCAACCACAACCTCTGCGTTCGTTGTCGCCCCTGCAGCACTACGTG
ATGGAACGAGGCTAAGCGCTTCTCTCGATTCTCCTCGGGGATGGGCTTGT
AATCATGAGACAGCAGCGGCATACAGCAGCGGTTGCCTTCGGAGGTCAGG
CGCGTGTGAAGGAGGAGGTGGGCGCATCACGATGATGATGTCTGGCCCAC
CGCCAGGCAGAGGGAAATTCGTAAAGATGGGAGGGACAGAGGATGCGCAG
AGCTTCGGGCCAAGGTGTATTCTCGCAAGTGGCCTCTCCCTGGAGGAGCG
CGGGGCAATACGCTCGATTCTTGACGACGAGGATCAAGACCGGGAGGACA
GAACACCTTTTGTGGCGCATACCTTGGAAATAGCGGAGAAGAGGGTGGGA
GACGTCCTGACCGATGCGCCGATGATCGGTCTGCTTCAGGAGAAACAAGA
GGCCAGGGATGCCTCGCCAGAACCGTCTTCGCCGGTGATTCTGATCAGCG
GTTTCACCAATCCGGAACTGAGAGACTTTGTCACACGGTTTCGCAGTGAA
ACGGGGGTTCGCGCTGCATTTGCCAAGGCTGTCCCAAACGCCATGACTAA
GTCGGTGGCTAGATTGTGCGGGGAGATTGCTCAAGATCACGCTGATGCTC
TCGCGGGCAAACTGTCCAGCGGCAAAGAATGA
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