EsuBft2179_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2179_3a-0001
Unique NameEsuBft2179_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:20751..22866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2179_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length141
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3aEsuBft2179_3aEctocarpus subulatus male Bft15bgeneScaffold_370 20751..22866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3a-0001EsuBft2179_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 20780..21281 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3a-0001-exonEsuBft2179_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 20751..21015 +
EsuBft2179_3a-0001-exonagat-exon-22313Ectocarpus subulatus male Bft15bexonScaffold_370 21068..21955 +
EsuBft2179_3a-0001-exonagat-exon-22314Ectocarpus subulatus male Bft15bexonScaffold_370 22603..22866 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3a-0001-exonagat-five_prime_utr-5546Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 20751..20779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3a-0001-cdsEsuBft2179_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 20780..21015 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_3a-0001-exonagat-three_prime_utr-8591Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 21282..21955 +
EsuBft2179_3a-0001-exonagat-three_prime_utr-8592Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 22603..22866 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2179_3a-0001 ID=EsuBft2179_3a-0001|Name=EsuBft2179_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1417bp|location=Sequence derived from alignment at Scaffold_370:20751..22866+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGAAAACCGCCAAAACGCCCGAAATGAGATGCTCCAAACCGCAAAGTCC
TTGTCCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTT
CCTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGAC
ACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGAAAGTAATGATCGAA
TACAAGGCGATCAAGGACGAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAA
GGGCGCAAAGCAAGCGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGACCG
CAGCAACAGTCGTGGCCGCGGCGGCGGCGGTCGCGGTGGCCGCTCAGGCG
GCTCCGGAGGAGTCGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGAT
GACGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGGGCGACG
TGGACTCCGTGGAAGACCAGGCGTTTTGAGCCGGGGCAGTCCCCCCAGGC
GAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGG
CCAGGCGGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGAT
GTGCAGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGG
ATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGAC
CTTAGTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATG
CTGCCCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTG
GCGGAGGAGGGCCACACGTATTCGGGGATTAAGGGGGGCCTCATGCTGAC
CACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGG
AGGCTATCAAGTAAAGCCAACGCTACACACCGCCTGTGCTGCACTCATTG
TTCCTGGCGATGCAAAAGCAGCCAACCCCACTGACCTCAACGAGTAACAC
CTCGCGCACGGCCATGCCCACGAGACATTGGTCAGGATCACGGCGGAGCA
GCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTTTTGGCTGTT
CGATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGC
GCACTGCTACCTCTTGCAGATGACGAAAAGGGCGGGGAGGGCGAGAGCAG
AGCGGATGCATCACGCCAAGGTTGGGGGGGAGAGAGAGATTCAGAGAGTG
AGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCG
TTTGTGCGCGAGGAGACGCCGGCGGCACCCGGCAACGGGATTCCGGGGGA
CGGAGGCAGCGTTCCCCCGTCGCCTCCTTCGGGAAGGGGTGACTTCGGCG
GAGGCAGTGACAGCCCC
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protein sequence of EsuBft2179_3a-0001

>EsuBft2179_3 ID=EsuBft2179_3|Name=EsuBft2179_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MLQTAKSLSEKGLTVNETFVLHLFLDALSDEYAMTKHNLRHAKELTRTGV
LKKVMIEYKAIKDELEQGKGKGAKGAKQAGKVVVVAAAVTAATVVAAAAA
VAVAAQAAPEESRRAREAAVEAPMTTEEAVLAQVVEHEGDVDSVEDQAF
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mRNA from alignment at Scaffold_370:20751..22866+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2179_3a-0001 ID=EsuBft2179_3a-0001|Name=EsuBft2179_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2116bp|location=Sequence derived from alignment at Scaffold_370:20751..22866+ (Ectocarpus subulatus male Bft15b)
GTGAAAACCGCCAAAACGCCCGAAATGAGATGCTCCAAACCGCAAAGTCC
TTGTCCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTT
CCTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGAC
ACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGAAAGTAATGATCGAA
TACAAGGCGATCAAGGACGAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAA
GGGCGCAAAGCAAGCGTACTTCGCCGACGGTGAGGTCCGCAGGGAGCGGT
GCTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGAC
CGCAGCAACAGTCGTGGCCGCGGCGGCGGCGGTCGCGGTGGCCGCTCAGG
CGGCTCCGGAGGAGTCGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCG
ATGACGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGGGCGA
CGTGGACTCCGTGGAAGACCAGGCGTTTTGAGCCGGGGCAGTCCCCCCAG
GCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAA
GGCCAGGCGGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCG
ATGTGCAGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGG
GGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTG
ACCTTAGTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAA
TGCTGCCCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGT
TGGCGGAGGAGGGCCACACGTATTCGGGGATTAAGGGGGGCCTCATGCTG
ACCACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCT
GGAGGCTATCAAGTAAAGCCAACGCTACACACCGCCTGTGCTGCACTCAT
TGTTCCTGGCGATGCAAAAGCAGCCAACCCCACTGACCTCAACGAGTAAC
ACCTCGCGCACGGCCATGCCCACGAGACATTGGTCAGGATCACGGCGGAG
CAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTTTTGGCTG
TTCGATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACAC
GCGCAGTTAAGAAGTTATTTCGCGTGTATCTCGACTTGGGGGGAAAGATG
AAAACCAGGAGCATTGGTGGCAACTGGTACACACTGATCATCAGAGACGA
TTTCTCCCGTTGGACGCGTGTTTTCTTCTTGAAACACAAGTCTGACGCAG
CGGTTGGGTTTGAGAAGTTCCTGGCGGACTACCGAACGAAAGGGGTTCCG
TGTGAGGTTTATATCGCACGTACCGACGGTGGCGGCGAGTTCCAGGGGCA
GTTTGCGGAAGTTTGCCGCAGACACGGCATCAAACAAGAGTTGACCCCCC
CTCACACCCCAAAATACAACGAGATAGCGGAGAGAGCGCTAGGGTTGATC
ACTGATGCCGCGCTTGCGTCACGCATCCAAGCGACGCAACTGTTCCCCGA
CGCACCGAACCACCCCGGGTTGTGGGCCGAGGCCATTTCGTGTGCATGCC
ATCAGCTGAACTGCACCGCCACCAAATCAAGCGAGGGAGACAAATCCGCC
TACGAGATGTTCCACCACTCCCCACCGCCTGTCGGGTCTACATACCCGTT
TCTCAAACCAGCCGTGTTCACGTCGAAAAGAAAAGCAAAGTCGCAACCAC
CCGCAATTTCACCTGGCGCCACGTGTCCGCTGCATCGCCCGCTCCCCCGC
AGCTGCTACCTCTTGCAGATGACGAAAAGGGCGGGGAGGGCGAGAGCAGA
GCGGATGCATCACGCCAAGGTTGGGGGGGAGAGAGAGATTCAGAGAGTGA
GTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGT
TTGTGCGCGAGGAGACGCCGGCGGCACCCGGCAACGGGATTCCGGGGGAC
GGAGGCAGCGTTCCCCCGTCGCCTCCTTCGGGAAGGGGTGACTTCGGCGG
AGGCAGTGACAGCCCC
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Coding sequence (CDS) from alignment at Scaffold_370:20751..22866+

>EsuBft2179_3a-0001 ID=EsuBft2179_3a-0001|Name=EsuBft2179_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_370:20751..22866+ (Ectocarpus subulatus male Bft15b)
ATGCTCCAAACCGCAAAGTCCTTGTCCGAGAAAGGACTAACTGTCAACGA
AACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCA
TGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTG
CTAAAGAAAGTAATGATCGAATACAAGGCGATCAAGGACGAGCTGGAGCA
GGGGAAAGGAAAAGGGGCGAAGGGCGCAAAGCAAGCGGGCAAGGTCGTGG
TCGTGGCGGCGGCCGTGACCGCAGCAACAGTCGTGGCCGCGGCGGCGGCG
GTCGCGGTGGCCGCTCAGGCGGCTCCGGAGGAGTCGAGGAGAGCAAGGGA
AGCAGCAGTGGAGGCGCCGATGACGACGGAGGAGGCCGTCCTAGCGCAAG
TGGTGGAGCATGAGGGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTGA
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