EsuBft2179_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2179_2a-0001
Unique NameEsuBft2179_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:9308..15075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D7FUS2
ProteomeIdEsuBft2179_2
Protein domainsTMhelix
Protein domainsG3DSA
Protein domainsIPR020846
Protein domainsPTHR24003
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR011701
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notehigh affinity nitrate transporter os:arabidopsis thaliana gn: pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1395
Hectar predicted targeting categorysignal anchor
Evalue5.01e-307
EggNOG OGsCOG2223@1|root,2QPIC@2759|Eukaryota
Ec32 ortholog descriptionNitrate high affinity transporter
Ec32 orthologEc-19_004130.1
Date last modified2016-09-26
Date creation2016-06-14
Preferred nameNRT2.2
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
DescriptionHigh affinity nitrate transporter
Descriptioncellular response to nitrate
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
TCDB2.A.1.8..
GO0055085
GO0010167
GO0016020
GO0043231
GO0016021
GO0006869
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_2aEsuBft2179_2aEctocarpus subulatus male Bft15bgeneScaffold_370 9308..15075 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_2a-0001-exonagat-exon-22312Ectocarpus subulatus male Bft15bexonScaffold_370 9308..9829 +
EsuBft2179_2a-0001-exonagat-exon-22310Ectocarpus subulatus male Bft15bexonScaffold_370 10209..10418 +
EsuBft2179_2a-0001-exonagat-exon-22311Ectocarpus subulatus male Bft15bexonScaffold_370 11279..11474 +
EsuBft2179_2a-0001-exonEsuBft2179_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 14609..15075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_2a-0001-cdsEsuBft2179_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 9308..9829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2179_2a-0001EsuBft2179_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 9308..15075 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2179_2a-0001 ID=EsuBft2179_2a-0001|Name=EsuBft2179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1395bp|location=Sequence derived from alignment at Scaffold_370:9308..15075+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAAACAGACGACAGCTATGACGTGCCCATCGACCCCAAGCAGCA
GGACAAGGCCACCAGGTTAAGGCTAACCAGCTTCCGACGCCCGCACATGC
GAGCCTTCCACTTCGCGTGGTTCGGATTCTTCATGGCCTTCGTCTCCTGG
TTCGCCTTCGTCCCCCTCATGAAGGAGATCAAGGGTGACCTCGGCATGAC
CAAGCTCGAGGTGTACAACGCCAACATCTCGTCCGTGTCCTCCACAGTGC
TCTCGAGTTTCATCGTGGGCCCCCTCTGCGACACCTTCGGTGCGCGCATC
ATCTCCAGCACCCTGCTCATCATGAGGTGTATCCCGACCGCCTTCGCCGG
CGTGGTGAACAGCGCCACCGACGTGGCCATCATCCGCTTCTTCATCGGCG
TGATGGGCGCCACGTTCGTGTGCACGCAGTTCTGGTCCTCGCAGATCTTC
GCGAAGGAGTTCGTCGGCACGGCCAACGCCACTACCGGAGGCTGGGGAAA
TCTGGGCGGCGGTGTCACTCAGTTCTTGATGGTCGGAATCTGGAACGCCT
TCAACACTGGCTATGACAGCGAGACCACGTGGCGTCTCTCGTTCGTCGTG
CCGGCGGCCATCGTGTTCTGCGTTGCCGTGGGCCAGCTGTTCCTCGCCGA
CGACTGCCCGAAGGGTAACTACAAGGAGCTCGAGGCGCACGGCGCCATGA
CTCGCAAGTCCTCCGCCGTCTCCTTCAGAAAGGGCTACATGAACGTGAAC
TCTTGGCTCATGTTCCTCCAGCACGCCGCCTGCTTTGGCGTTGAGCTGAC
CGTCAACAACGTGGCCGCCAACTACTTTTCGGACGAGTTCGACCTGTCTA
CCTCCAAGGCTGGTATCGTGGCGTCGTTGTTCGGACTCATGAACCGCTTC
GCTCGCTCTCTGGGTGGCATCTGGTCCGACTTCCTGTTCGCCAAGTTCGG
CGGTGGCGTTACCGGCATGCGCGGACGCTTCTTCGCGCAGTGGTCCGCTC
TCCTGTGGGAAGGCTGCTTCCTCTTCCTCTTCACCTACATGAACACGCTT
GATGCGGCCATCCCCATCCTCATCCTCTTCTCCGTGGGCGTGCAGATGGC
GGAGGGCACCTCGTACGGCATCGTGCCGTACATCGTCCCAGACGCGACGG
GCGCGGTGTCGGGCATCGTGGGCGCCGGTGGCAACTTCGGCGCGGTGATG
TGGGGTCTGATCTTCCGGTTCGCGGGCAGGAGCGAGAGGGCGGTGTTCCG
AATCATCGCGGCGTTCGTGGTGGGCCTGTCGTGCCTTACGGCTCTCCTCA
AGATCCGCGGGTACGCCACGTGCTTCATCGCCCCCAAGGGAGAACCGGAC
TCCATCGCGTACATCAAAGACTCTTCTCGTGTCAAGATTGGTTGA
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protein sequence of EsuBft2179_2a-0001

>EsuBft2179_2 ID=EsuBft2179_2|Name=EsuBft2179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=464bp
MFQTDDSYDVPIDPKQQDKATRLRLTSFRRPHMRAFHFAWFGFFMAFVSW
FAFVPLMKEIKGDLGMTKLEVYNANISSVSSTVLSSFIVGPLCDTFGARI
ISSTLLIMRCIPTAFAGVVNSATDVAIIRFFIGVMGATFVCTQFWSSQIF
AKEFVGTANATTGGWGNLGGGVTQFLMVGIWNAFNTGYDSETTWRLSFVV
PAAIVFCVAVGQLFLADDCPKGNYKELEAHGAMTRKSSAVSFRKGYMNVN
SWLMFLQHAACFGVELTVNNVAANYFSDEFDLSTSKAGIVASLFGLMNRF
ARSLGGIWSDFLFAKFGGGVTGMRGRFFAQWSALLWEGCFLFLFTYMNTL
DAAIPILILFSVGVQMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVM
WGLIFRFAGRSERAVFRIIAAFVVGLSCLTALLKIRGYATCFIAPKGEPD
SIAYIKDSSRVKIG
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mRNA from alignment at Scaffold_370:9308..15075+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2179_2a-0001 ID=EsuBft2179_2a-0001|Name=EsuBft2179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5768bp|location=Sequence derived from alignment at Scaffold_370:9308..15075+ (Ectocarpus subulatus male Bft15b)
ATGTTTCAAACAGACGACAGCTATGACGTGCCCATCGACCCCAAGCAGCA
GGACAAGGCCACCAGGTTAAGGCTAACCAGCTTCCGACGCCCGCACATGC
GAGCCTTCCACTTCGCGTGGTTCGGATTCTTCATGGCCTTCGTCTCCTGG
TTCGCCTTCGTCCCCCTCATGAAGGAGATCAAGGGTGACCTCGGCATGAC
CAAGCTCGAGGTGTACAACGCCAACATCTCGTCCGTGTCCTCCACAGTGC
TCTCGAGTTTCATCGTGGGCCCCCTCTGCGACACCTTCGGTGCGCGCATC
ATCTCCAGCACCCTGCTCATCATGAGGTGTATCCCGACCGCCTTCGCCGG
CGTGGTGAACAGCGCCACCGACGTGGCCATCATCCGCTTCTTCATCGGCG
TGATGGGCGCCACGTTCGTGTGCACGCAGTTCTGGTCCTCGCAGATCTTC
GCGAAGGAGTTCGTCGGCACGGCCAACGCCACTACCGGAGGCTGGGGAAA
TCTGGGCGGCGGTGTCACTCAGGTGCGTCGGAGAAAATATAGGAAGGGAG
CGAGAGAACAAGATTGTTTCCAAAGGTGGCATCTAGACCATGTCGAATAG
TTACCCAAGGGACAAAGGGATCTCACTTTGTAGATACTTGGGTCATTACT
CCTCCTGCACTCCCCACGCCATTTCCCCCCCCATGCCACAGGTCCTAATC
CCCTCCCCGTCCATGGCCAAAAGGAGAACGTTACATCTCGCCCCGACGCC
CACCGACCGTTTCGCATAATCCCCTACCCGTTCTTGTGAGCTTGTTGGTT
TGTCCATCAGGCACATCATCGGCACGTGGAAAGTCGTGTTTGTTTACTCC
TCACAGTCGCCTTTATCGTCCATCCCTCCTCGCCTCGTGTGATCTACGTA
GTTCTTGATGGTCGGAATCTGGAACGCCTTCAACACTGGCTATGACAGCG
AGACCACGTGGCGTCTCTCGTTCGTCGTGCCGGCGGCCATCGTGTTCTGC
GTTGCCGTGGGCCAGCTGTTCCTCGCCGACGACTGCCCGAAGGGTAACTA
CAAGGAGCTCGAGGCGCACGGCGCCATGACTCGCAAGTCCTCCGCCGTCT
CCTTCAGAAAGGTAAATGAGGCGGATTTGGCTCCGTGCCTATACCAGAGT
TCAGTATGGTCGAGTTTGCCGGCAGAACTGCAGTGTGCCCCATCTCGGCG
CGATGATTGGTGGTGCGGTGACTATTCAGCATGATGCGGAACGGTCTCTC
TTCCATTCTACACCCGTTGCTGATGCCATCCATCATCTCTCACGTTTACC
GTTCGCTTGCCCCCTTGCCTTCCCTGTAATCGCCCCCCCATTCGCTGCTT
GTGCCGAGAGAGAAAAACAGAATCTAAGGAAATAATCCAAGGATAAGGAG
GGTCTAGAAGTGTACGTAATGTTGAAGGAAGGAATAGGGTTCAAGCACTG
CCTACATGGACCAATGGATACAGGAACAAAGCTTAAGGTCAAATTCAGGA
CCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGAC
GACGAAGACGACGAGTTCGAATGTGATTGCGGCTTAGAATACGAAGACCG
TGTTCATGGTGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGT
ACGTGACTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAG
GCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTG
GGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGA
CATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGT
GATCGGTCCTGTGGGAACAATGCTGCGTCCTCTCGAGGACGCGAGGTCAA
TGGTCTAACCGCTGAGGCATGTAAAACATAAGAGTACGCCCCCCCTTCCC
CCCCCCCAATTCGCTGAGCAGGGCTACATGAACGTGAACTCTTGGCTCAT
GTTCCTCCAGCACGCCGCCTGCTTTGGCGTTGAGCTGACCGTCAACAACG
TGGCCGCCAACTACTTTTCGGACGAGTTCGACCTGTCTACCTCCAAGGCT
GGTATCGTGGCGTCGTTGTTCGGACTCATGAACCGCTTCGCTCGCTCTCT
GGGTGGCATCTGGTCCGGTTAGTACGCACGACACGCGACTGTATTGGCCG
GAAGTGCTACGGTATTGAAAATGGTTGACCAAGTACCGTCTGTGCCCTGT
TCGGACGTATCGATCCCGTAGAGTGCGTTCGTGACCTGAAACATACGCGA
AGCGTTGCTACGGCAAGTCATCACGTGCACGTCGCTTGGAACTTCTCCTT
TTGTGTCGATACATGGTCGAAACAGGGTGAAGCGATGCATATTCCCACCA
CCAGATAAGTCGTGTCCAACTTGAGTACTATCTCTCCCCTCCCTCCCACG
CCCCTTGCCCGCCCTGCGTCTCCCCCGGACGAATTGCCCACCCCCCTGTT
AAACGCCCCCCCCCTCCGTGTTGGGAAAAGTACAGGGCCAAGAGAAAACA
GGTGAAGGGACTAGTGAAAAAGAAGAAAAAGTGTATTTGGGACGAAGTAG
TGCAGAAGGCCAACGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNACTCGGCAACCAGTCTACCGTTGTTTTTTTTT
CCTCTGTGTTTTTTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGT
TGTGCGTGGTCGAGAGCCCCCACTCCGCGCAAGGGGGATGATCGCACTAC
GTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTACACAGTGCTTACA
ACTGGCTCTGGAAGCACCAGAAAATAATTTAAGTCATACGCAGCTGTCAT
CCGTAAGGAAGTAAGCACAGGATGCCGAACACTCTTAGCAGGATACAGCG
CACCCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGA
TGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGT
AGGGATGCGAGGTCAATNCTCCCTGTAAAACGCCCACAACAACGACGACA
GACTTCCTGTTCGCCAAGTTCGGCGGTGGCGTTACCGGCATGCGCGGACG
CTTCTTCGCGCAGTGGTCCGCTCTCCTGTGGGAAGGCTGCTTCCTCTTCC
TCTTCACCTACATGAACACGCTTGATGCGGCCATCCCCATCCTCATCCTC
TTCTCCGTGGGCGTGCAGATGGCGGAGGGCACCTCGTACGGCATCGTGCC
GTACATCGTCCCAGACGCGACGGGCGCGGTGTCGGGCATCGTGGGCGCCG
GTGGCAACTTCGGCGCGGTGATGTGGGGTCTGATCTTCCGGTTCGCGGGC
AGGAGCGAGAGGGCGGTGTTCCGAATCATCGCGGCGTTCGTGGTGGGCCT
GTCGTGCCTTACGGCTCTCCTCAAGATCCGCGGGTACGCCACGTGCTTCA
TCGCCCCCAAGGGAGAACCGGACTCCATCGCGTACATCAAAGACTCTTCT
CGTGTCAAGATTGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_370:9308..15075+

>EsuBft2179_2a-0001 ID=EsuBft2179_2a-0001|Name=EsuBft2179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1395bp|location=Sequence derived from alignment at Scaffold_370:9308..15075+ (Ectocarpus subulatus male Bft15b)
ATGTTTCAAACAGACGACAGCTATGACGTGCCCATCGACCCCAAGCAGCA
GGACAAGGCCACCAGGTTAAGGCTAACCAGCTTCCGACGCCCGCACATGC
GAGCCTTCCACTTCGCGTGGTTCGGATTCTTCATGGCCTTCGTCTCCTGG
TTCGCCTTCGTCCCCCTCATGAAGGAGATCAAGGGTGACCTCGGCATGAC
CAAGCTCGAGGTGTACAACGCCAACATCTCGTCCGTGTCCTCCACAGTGC
TCTCGAGTTTCATCGTGGGCCCCCTCTGCGACACCTTCGGTGCGCGCATC
ATCTCCAGCACCCTGCTCATCATGAGGTGTATCCCGACCGCCTTCGCCGG
CGTGGTGAACAGCGCCACCGACGTGGCCATCATCCGCTTCTTCATCGGCG
TGATGGGCGCCACGTTCGTGTGCACGCAGTTCTGGTCCTCGCAGATCTTC
GCGAAGGAGTTCGTCGGCACGGCCAACGCCACTACCGGAGGCTGGGGAAA
TCTGGGCGGCGGTGTCACTCAGTTCTTGATGGTCGGAATCTGGAACGCCT
TCAACACTGGCTATGACAGCGAGACCACGTGGCGTCTCTCGTTCGTCGTG
CCGGCGGCCATCGTGTTCTGCGTTGCCGTGGGCCAGCTGTTCCTCGCCGA
CGACTGCCCGAAGGGTAACTACAAGGAGCTCGAGGCGCACGGCGCCATGA
CTCGCAAGTCCTCCGCCGTCTCCTTCAGAAAGGGCTACATGAACGTGAAC
TCTTGGCTCATGTTCCTCCAGCACGCCGCCTGCTTTGGCGTTGAGCTGAC
CGTCAACAACGTGGCCGCCAACTACTTTTCGGACGAGTTCGACCTGTCTA
CCTCCAAGGCTGGTATCGTGGCGTCGTTGTTCGGACTCATGAACCGCTTC
GCTCGCTCTCTGGGTGGCATCTGGTCCGACTTCCTGTTCGCCAAGTTCGG
CGGTGGCGTTACCGGCATGCGCGGACGCTTCTTCGCGCAGTGGTCCGCTC
TCCTGTGGGAAGGCTGCTTCCTCTTCCTCTTCACCTACATGAACACGCTT
GATGCGGCCATCCCCATCCTCATCCTCTTCTCCGTGGGCGTGCAGATGGC
GGAGGGCACCTCGTACGGCATCGTGCCGTACATCGTCCCAGACGCGACGG
GCGCGGTGTCGGGCATCGTGGGCGCCGGTGGCAACTTCGGCGCGGTGATG
TGGGGTCTGATCTTCCGGTTCGCGGGCAGGAGCGAGAGGGCGGTGTTCCG
AATCATCGCGGCGTTCGTGGTGGGCCTGTCGTGCCTTACGGCTCTCCTCA
AGATCCGCGGGTACGCCACGTGCTTCATCGCCCCCAAGGGAGAACCGGAC
TCCATCGCGTACATCAAAGACTCTTCTCGTGTCAAGATTGGTTGA
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