EsuBft2178_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2178_2a-0001
Unique NameEsuBft2178_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:993941..994394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2178_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2178_2aEsuBft2178_2aEctocarpus subulatus male Bft15bgeneScaffold_242 993941..994394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2178_2a-0001-exonEsuBft2178_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 993941..994394 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2178_2a-0001-exonagat-three_prime_utr-8588Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 993941..993962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2178_2a-0001-cdsEsuBft2178_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 993963..994394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2178_2a-0001EsuBft2178_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 993963..994394 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2178_2a-0001 ID=EsuBft2178_2a-0001|Name=EsuBft2178_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=454bp|location=Sequence derived from alignment at Scaffold_242:993941..994394- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACGGAGGACAGCCGCTTCCCCAAGCGCATGTTGTTAGGAGCGAT
GGCGGCGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGAGTGGGTGTCTC
GTCTAGGAGACGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGAGGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCTGAAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTGTGTACCCGGCTGATGTTGTTGCGATCGGTTT
CCCT
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protein sequence of EsuBft2178_2a-0001

>EsuBft2178_2 ID=EsuBft2178_2|Name=EsuBft2178_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MRTEDSRFPKRMLLGAMAAGVGYRGGQESEWVSRLGDDLVAFNMGDEKEG
GKWKESAKDPEVWYNKVEEGAAWFMRKWHRQEAEASAKRQRAREAEAEST
AISGPKRKRAGEAAVGGKKRRPGTAEEASRAAEAALVANCVPG
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mRNA from alignment at Scaffold_242:993941..994394-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2178_2a-0001 ID=EsuBft2178_2a-0001|Name=EsuBft2178_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=454bp|location=Sequence derived from alignment at Scaffold_242:993941..994394- (Ectocarpus subulatus male Bft15b)
ATGCGCACGGAGGACAGCCGCTTCCCCAAGCGCATGTTGTTAGGAGCGAT
GGCGGCGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGAGTGGGTGTCTC
GTCTAGGAGACGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGAGGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCTGAAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTGTGTACCCGGCTGATGTTGTTGCGATCGGTTT
CCCT
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Coding sequence (CDS) from alignment at Scaffold_242:993941..994394-

>EsuBft2178_2a-0001 ID=EsuBft2178_2a-0001|Name=EsuBft2178_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_242:993941..994394- (Ectocarpus subulatus male Bft15b)
ATGCGCACGGAGGACAGCCGCTTCCCCAAGCGCATGTTGTTAGGAGCGAT
GGCGGCGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGAGTGGGTGTCTC
GTCTAGGAGACGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGAGGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGCGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCTGAAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTGTGTACCCGGCTGA
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