EsuBft2145_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2145_4a-0001
Unique NameEsuBft2145_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:24057..24701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G105
ProteomeIdEsuBft2145_4
Protein domainsIPR027806
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length54
Hectar predicted targeting categoryother localisation
Evalue1.01e-70
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_4aEsuBft2145_4aEctocarpus subulatus male Bft15bgeneScaffold_82 24057..24701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_4a-0001-exonagat-exon-88037Ectocarpus subulatus male Bft15bexonScaffold_82 24057..24170 -
EsuBft2145_4a-0001-exonagat-exon-88036Ectocarpus subulatus male Bft15bexonScaffold_82 24222..24351 -
EsuBft2145_4a-0001-exonEsuBft2145_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 24397..24701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_4a-0001-cdsEsuBft2145_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 24057..24170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_4a-0001EsuBft2145_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 24057..24701 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2145_4a-0001 ID=EsuBft2145_4a-0001|Name=EsuBft2145_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_82:24057..24701- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCCGCTATATGCGGCAAACCTCACGAAAACATTGTCGGATGCAA
GAAAATAGATCGACCACCCCGTGCGTCATGTTGTCGACGATGTTTGCGTC
TCAGGCCTATACGCAACCAGCGCTTTTTCTACAACGGGTACAAGAGGAAG
CACGCTATCAAGTTCCAAGGAGTCGTGACGCCAGACGGGCTGTTTGTTGA
CCTGTACGGCGCAGAGGTTGGAACGAGGCACGACGGCTACTTGCTTGCGC
AGTCTGCACTACTTGAGAAGCTACAGACCTACATAAACAGCCCTTCAGGC
CACCCACAGTGCTCTTTTAGTGCATCTGTCAATGGCCCCCTTACGCCCGC
AATGAGAAACTTTAACAAGAGCATGAGCCAATGCCGAGTGACGGTCGAAT
GGGGGTTCAAGGAGATGACTAGCAAGTGGGCCTTCTACACGGTAGCAACA
CTGTTGTCAAACTTCCACTCCTGCCTGAACGGCGGCAACCAGATTTCACA
GTACTTTGGAGTAGAGCCTCCCACGCTGGAAGAGTACCTTAAGGTGTAA
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protein sequence of EsuBft2145_4a-0001

>EsuBft2145_4 ID=EsuBft2145_4|Name=EsuBft2145_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MHSAICGKPHENIVGCKKIDRPPRASCCRRCLRLRPIRNQRFFYNGYKRK
HAIKFQGVVTPDGLFVDLYGAEVGTRHDGYLLAQSALLEKLQTYINSPSG
HPQCSFSASVNGPLTPAMRNFNKSMSQCRVTVEWGFKEMTSKWAFYTVAT
LLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV
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mRNA from alignment at Scaffold_82:24057..24701-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2145_4a-0001 ID=EsuBft2145_4a-0001|Name=EsuBft2145_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=645bp|location=Sequence derived from alignment at Scaffold_82:24057..24701- (Ectocarpus subulatus male Bft15b)
ATGCACTCCGCTATATGCGGCAAACCTCACGAAAACATTGTCGGATGCAA
GAAAATAGATCGACCACCCCGTGCGTCATGTTGTCGACGATGTTTGCGTC
TCAGGCCTATACGCAACCAGCGCTTTTTCTACAACGGGTACAAGAGGAAG
CACGCTATCAAGTTCCAAGGAGTCGTGACGCCAGACGGGCTGTTTGTTGA
CCTGTACGGCGCAGAGGTTGGAACGAGGCACGACGGCTACTTGCTTGCGC
AGTCTGCACTACTTGAGAAGCTACAGACCTACATAAACAGCCCTTCAGGC
CACCCGTATTGCTTGTATGGTGATCCAGCGTAAGGTCAGACCGATCACAG
ACAGTGCTCTTTTAGTGCATCTGTCAATGGCCCCCTTACGCCCGCAATGA
GAAACTTTAACAAGAGCATGAGCCAATGCCGAGTGACGGTCGAATGGGGG
TTCAAGGAGATGACTAGCAAGTGGGCCTTCGTTGACATGAAGTGCCAGTA
GAAGTTCCTGCTGAGCCCTGTAGCGACGCAGTACACGGTAGCAACACTGT
TGTCAAACTTCCACTCCTGCCTGAACGGCGGCAACCAGATTTCACAGTAC
TTTGGAGTAGAGCCTCCCACGCTGGAAGAGTACCTTAAGGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_82:24057..24701-

>EsuBft2145_4a-0001 ID=EsuBft2145_4a-0001|Name=EsuBft2145_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_82:24057..24701- (Ectocarpus subulatus male Bft15b)
ATGCACTCCGCTATATGCGGCAAACCTCACGAAAACATTGTCGGATGCAA
GAAAATAGATCGACCACCCCGTGCGTCATGTTGTCGACGATGTTTGCGTC
TCAGGCCTATACGCAACCAGCGCTTTTTCTACAACGGGTACAAGAGGAAG
CACGCTATCAAGTTCCAAGGAGTCGTGACGCCAGACGGGCTGTTTGTTGA
CCTGTACGGCGCAGAGGTTGGAACGAGGCACGACGGCTACTTGCTTGCGC
AGTCTGCACTACTTGAGAAGCTACAGACCTACATAAACAGCCCTTCAGGC
CACCCACAGTGCTCTTTTAGTGCATCTGTCAATGGCCCCCTTACGCCCGC
AATGAGAAACTTTAACAAGAGCATGAGCCAATGCCGAGTGACGGTCGAAT
GGGGGTTCAAGGAGATGACTAGCAAGTGGGCCTTCTACACGGTAGCAACA
CTGTTGTCAAACTTCCACTCCTGCCTGAACGGCGGCAACCAGATTTCACA
GTACTTTGGAGTAGAGCCTCCCACGCTGGAAGAGTACCTTAAGGTGTAA
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