EsuBft2145_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2145_3a-0001
Unique NameEsuBft2145_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:19759..21130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2145_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length61
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_3aEsuBft2145_3aEctocarpus subulatus male Bft15bgeneScaffold_82 19759..21130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_3a-0001-exonEsuBft2145_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 19759..20120 +
EsuBft2145_3a-0001-exonagat-exon-88035Ectocarpus subulatus male Bft15bexonScaffold_82 20877..21130 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_3a-0001-exonagat-five_prime_utr-5454Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 19759..19810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_3a-0001-cdsEsuBft2145_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 19811..20120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2145_3a-0001EsuBft2145_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 19811..21130 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2145_3a-0001 ID=EsuBft2145_3a-0001|Name=EsuBft2145_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=616bp|location=Sequence derived from alignment at Scaffold_82:19759..21130+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCACAGACAGACCGCACCAGACCACACCAGGGCGAGTAGCGACGGGAA
GGATGTCGACCAACGCAGTCCGCCAAAGCTCGAGGACCGTAGCCCCCTCT
TTCAAAGTTCGTGATAGGGTTAGCGACGACCAGGAGACTTATTTTCTGGC
AGCAGGGCAGCGGAAGGCTAGGGAACTGGAGGAGTTCGGCGGAGAAGAGT
CGAGAGACAGCAGTGGCGGCTCTGGCAACCCACCTCCTCCTGCTGGTGGT
CTTGAGGAGGATGGAGTACAGATCCTGTCGACACCGCGTGGCAATGTGCA
GGCTAAGCCACCAAGGAAGGGCAAGTGGACGCTTCCATGCATGATCCGCG
TTGCTGAGAAGGGGCTCAAGTGTCAATGCTGGCAGGTTAGAGGTCGCAAG
GAAACGGTGCCGCAGCAGTGGCTGGAGGCCGACAAGGAGATACGGGGGAA
GCTCCGTGGAACATCATGTTCGAGGGAATCAGTGACACTGCGATCATCTC
CAAATTCACCGCCGTGGTTTCCGAGAAGACTGGAGCAGAGAATAAGGCCG
CGGCCACGACCGGCGGGGGGGAAGACGGCTCGGAAAACCTTGGCGAAGAT
GAGATTAAGCTGGTGA
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protein sequence of EsuBft2145_3a-0001

>EsuBft2145_3 ID=EsuBft2145_3|Name=EsuBft2145_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MSTNAVRQSSRTVAPSFKVRDRVSDDQETYFLAAGQRKARELEEFGGEES
RDSSGGSGNPPPPAGGLEEDGVQILSTPRGNVQAKPPRKGKWTLPCMIRV
AEKGLKCQCWQVRGRKETVPQQWLEADKEIRGKLRGTSCSRESVTLRSSP
NSPPWFPRRLEQRIRPRPRPAGGKTARKTLAKMRLSW
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mRNA from alignment at Scaffold_82:19759..21130+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2145_3a-0001 ID=EsuBft2145_3a-0001|Name=EsuBft2145_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1372bp|location=Sequence derived from alignment at Scaffold_82:19759..21130+ (Ectocarpus subulatus male Bft15b)
CCGCACAGACAGACCGCACCAGACCACACCAGGGCGAGTAGCGACGGGAA
GGATGTCGACCAACGCAGTCCGCCAAAGCTCGAGGACCGTAGCCCCCTCT
TTCAAAGTTCGTGATAGGGTTAGCGACGACCAGGAGACTTATTTTCTGGC
AGCAGGGCAGCGGAAGGCTAGGGAACTGGAGGAGTTCGGCGGAGAAGAGT
CGAGAGACAGCAGTGGCGGCTCTGGCAACCCACCTCCTCCTGCTGGTGGT
CTTGAGGAGGATGGAGTACAGATCCTGTCGACACCGCGTGGCAATGTGCA
GGCTAAGCCACCAAGGAAGGGCAAGTGGACGCTTCCATGCATGATCCGCG
TTGCTGAGAAGGGTAAGTCTCTACTGCTGTGTAGATGCGAGAGCACGGCT
CTCTTTCTACACATGGTCCATGTTGGGTCTAGACCGCCGTATGTCCTGCT
GCTGTTGCCTTGATTCGCAGATAGGATATAGCTCTGGCATGATGCGATAG
GATCCAGCTCCGGCATGATTCGAATTTGCAGTTGTACGGCCGCCATCTGG
TTCGCTTCGCCTCCCTCGAGATTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTACGATCGCGCGTGCAACTCGCAACTCAACTTT
GTCCATGTGTACACAATCGCACGAGAACAAGAAGAAGACACGCCCGGCCG
CCGCATCCCATCAACTTAGCCAACACCGCCATACTCCCACATGCGGGACG
CAGCCAATCAGTTGTAGCACGTCCTTTGATTGTCCCTTGATGGATAGCTT
ACCAACGTACGTACGTGGTACCAGGCATGTATTAATAAGACGGATAGGTG
ACTGGTTTGATCCGCATTTCAAAAATCAAAAATCGCGCGCGCCCTCCTGT
TGAGTGAGACACACATATTGCACATCCACATCATCTGCCACGCACCATGG
GTTTCGTTACACCCCCCCGGTTGCTGCCATCTGCTATCTTATTAGCATGC
AGCAGTGTTGTTCGGCCATCATGCGCAGCTGTGAAAAAATAACCAAGAGC
GTCTCAAATCTTTGCGCATGTCTCCGCGTCCTGTTTTTTTTTCCGGCGCT
TTGTCATGTTTGACGCAGGGCTCAAGTGTCAATGCTGGCAGGTTAGAGGT
CGCAAGGAAACGGTGCCGCAGCAGTGGCTGGAGGCCGACAAGGAGATACG
GGGGAAGCTCCGTGGAACATCATGTTCGAGGGAATCAGTGACACTGCGAT
CATCTCCAAATTCACCGCCGTGGTTTCCGAGAAGACTGGAGCAGAGAATA
AGGCCGCGGCCACGACCGGCGGGGGGGAAGACGGCTCGGAAAACCTTGGC
GAAGATGAGATTAAGCTGGTGA
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Coding sequence (CDS) from alignment at Scaffold_82:19759..21130+

>EsuBft2145_3a-0001 ID=EsuBft2145_3a-0001|Name=EsuBft2145_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_82:19759..21130+ (Ectocarpus subulatus male Bft15b)
ATGTCGACCAACGCAGTCCGCCAAAGCTCGAGGACCGTAGCCCCCTCTTT
CAAAGTTCGTGATAGGGTTAGCGACGACCAGGAGACTTATTTTCTGGCAG
CAGGGCAGCGGAAGGCTAGGGAACTGGAGGAGTTCGGCGGAGAAGAGTCG
AGAGACAGCAGTGGCGGCTCTGGCAACCCACCTCCTCCTGCTGGTGGTCT
TGAGGAGGATGGAGTACAGATCCTGTCGACACCGCGTGGCAATGTGCAGG
CTAAGCCACCAAGGAAGGGCAAGTGGACGCTTCCATGCATGATCCGCGTT
GCTGAGAAGGGGCTCAAGTGTCAATGCTGGCAGGTTAGAGGTCGCAAGGA
AACGGTGCCGCAGCAGTGGCTGGAGGCCGACAAGGAGATACGGGGGAAGC
TCCGTGGAACATCATGTTCGAGGGAATCAGTGACACTGCGATCATCTCCA
AATTCACCGCCGTGGTTTCCGAGAAGACTGGAGCAGAGAATAAGGCCGCG
GCCACGACCGGCGGGGGGGAAGACGGCTCGGAAAACCTTGGCGAAGATGA
GATTAAGCTGGTGA
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