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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft213_8 |
| Protein domains | PTHR22930 |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR006912 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | nuclease harbi1 os:danio rerio gn:harbi1 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2103 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 5.7e-113 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft213_8a-0001 ID=EsuBft213_8a-0001|Name=EsuBft213_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2103bp|location=Sequence derived from alignment at Scaffold_370:526425..531788- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA GATCACACAACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC CTACCCGTTTTTCGTGCACTTGGTGGGGCTGGTGAGGGACAGAGACTGGT TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG TTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCGC AGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACCT TCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGTC TACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATCG CATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTACT GGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGGG AAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTCT GGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATCC GCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGAG CAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGGG GTGCTATCTGCTGGTGGACAATGGGTACCACAAGTGGAGGACTCTCATTC CCCCTTCCAAGTGCCCGATCGACCGTGGCGACCTCATCTTCTCGAAGAGG CTCGAGAGCGCTCGCAAGGACGTCGAATGCTACTTCGGGATCCTCAAAGG GCGCTTTCGAATCAACAAGCTGGCCATCGGCTTTCACAAGCAGGAATACA TCGACAACGTGTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGC TTCGACAACCGGGGGGACATGAGCGAGGAGCCCAACTGGGCTGGGAGCGC CGGCCTGCACAACGCCGCGGATCGCGACCCCAACACGGACTACAGCTCGG TCGGGTCAATGGACGGTCAGCATGAGGCGGTCGAGGTGGAGACGGGCTTC GGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCGTGTACCGCAGGGAAAA GAAGAGGGACATTGTGTGGCTGTCGTAGGGGAGGAAGGCGGTGCTGTTCT GGCCGTAGGTTTGACTCTAGGGTAACCATGTGCGAGCGTTGTGACGGTTA TTTTTGCGGCAACAACGCGTTCGTGCACGTATATACAAGCTCACAGCCGG GAGATTGGTGGGGGTGGCGGGCAGCCAATTTCAGCAACACGTAGCATCGG CTGTGTGTACGGGCGCGGACTTTTTTTCGAAGTTTCACCAGAACACATAA CTGAAACCGATACGCAGGGATTCGCAGCCTGTGTCATGTGTACGTTGTCA TCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAACCTGGACTTCG GGG back to topprotein sequence of EsuBft213_8a-0001 >EsuBft213_8 ID=EsuBft213_8|Name=EsuBft213_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=497bp
MRVAVPALLGLLGVARLGCALVLPAGRVVHRQMAETATESGGIDVPAAFA TTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYV RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVGLV RDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQ TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTD VTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATN DKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGF HKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPN TDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWLS back to topmRNA from alignment at Scaffold_370:526425..531788- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft213_8a-0001 ID=EsuBft213_8a-0001|Name=EsuBft213_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5364bp|location=Sequence derived from alignment at Scaffold_370:526425..531788- (Ectocarpus subulatus male Bft15b) GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG
ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG
GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG
ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC
AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC
AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC
CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA
TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA
AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA
CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC
ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC
GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA
AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA
GATCACACAACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC
CTACCCGTTTTTCGTGCACTTGGTGGGGCTGGTGAGGGACAGAGACTGGT
TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG
TTGAAGGTGAGCAAAGACGATGAAATGCTGCACTTCTCGAAAAATGGACC
GCTGGCACCGGAGTGCCGGCGGCGGCACAGCATGCGTTTGAAAGGTGTAC
ACCGATAAGGGCTGTGGCTGCGATCTGCTCTATATCCCTTGTCCGCCTCT
ACCCCAGTACATTGGGTGGTGCGCATGCATTCTTCGTTGTTCTGCACACT
TCGTGCCTAGTCTTAAGTTCATTTAAAAGGGTGAGTCCCTCCCTTGTAGC
CGGATGAAAAAAAACCTCATGTTTTGAAATGGTCCGCCGTCGCATAGAGC
GCCGGCCGCACCACGGTCGGCGCTGGTTTCGAATACATAAGGTGTACAAC
GTAGAGGGTGGTTGCTGCTGTGCTGTACACCCCTTTTCTCCAGCATTCAT
CATCTACAGCGGCCGCGTGTGGTGCGCATGTATACTTCGTTCCTCTCCAC
ACTTTCGTCTAAAGTTGGTTTAGAAGACCCGACCACAGCAGCAGTGGGAG
TCCTCTCCCTTGTTGCCGGCGCTGGTCGGCAGTAGGGTGGTACAACATGT
ACAGCAGTCGAAAACAAAACAAAACGTTGGCAACCGCTAGGGCGAAGCCA
GGGGTTGTTTTGCACGCGGGTCAGTTTACTGTCACCAGCCACCATGTGCT
CACAAGCCAACAATGCAAACGTAGAGAGAAACACGCCGCGCGCAAGCCAC
AGCAGTGTCGTGGTCAAGCGTGTTAAACTCTCGAATGGTCAACTGCCGAG
TGTGTGACAAACCAGCACAGCCCCGGGGTTGTTGTAGAGGTTGGAAAAAA
TCAATTGCGACCTACATGCTCCATGATAGAGGCCGGCCGATGGCGTACAG
TTTTCAAAATGTTGAACGTTGAGGCAGCCACCAAGAAACAAAAAAACAAG
CTAACACTCAGCGTAGCTGCTGCAGCTGCCCCTGTCGCGAGCGCAGGGGT
GACTGCGGCGCGCGCGTACGCCACTCATATTTTCAATTTTCCGCAGGGGA
CCCGCGGCCTGAGTATATTTCCTGAGTTCAAAGCTAAGAACGCTGTTCCT
CACGAAAAAGCAACGGATTTATCCGCGCGTTGTTGCTTTCCTCCGCCGCA
TACGCAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCG
CAGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACC
TTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGT
CTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATC
GCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTAC
TGGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGG
GAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTC
TGGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATC
CGCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGA
GCAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGG
GGTGCTATCTGCTGGTGGACAATGGGTACCACAAGGTGAATCTTCGACGA
GGAGAGAGCCCCGAGTGTGTGTCGTGTGTGTGTGCGCGCTGTGTGTGTGT
GCGTGTTGAGTGTGTGTCAATGCGTACCGCCGTCTCGTACGTGTACGTAT
CTAGTATCTACCATCTTTTTCCTATTTTCCTGGTAGTTGCCAGCGGCGCT
TTTTGCATTTTTTTTTGTTCTTGGTAAGCGGCCGGAACAGTTTCTGCAAC
CTTCTGTGCGTCGCCGGGGAAAGAAAGAAACACTTGCCCAGACGGGTTCG
TCTCCGGAAGTTCGATTTTTTGTGATGTTTGATTCCGCGACAGCAGTCAA
CTAGGCCCTCTGCGGCGCGGCGTTGGCAGATTGCGGCTTCTCTTGTAAAG
AAAAATACCAACCACTTGACAACACCAATACAAGGAGAGAAAGGTCCGCG
GTATTGGAGAAATCCTTGGCGTGAGAACACTATGAGGTCTTAACCGCGTG
CTTAATTCTCTTCCCCTCTACCTCTGCCCGTTGCCCTCTTGCTCTCCCAA
AGAACGCTGTTCCTCACGAAAAAGCAACGGATTTATCCGCGCGTTGTTGC
TTTCCTCCGCCGCATACGCAGGTGCTGGCCTGTCTGCAGATACTCAGCAG
AGGAAATGTGTTCGCAGATATCTACCACATGTCCTTCATCAGCTTTCAGA
CGGTGGCGTCCACCTTCCACCGCTTCTGCATGTACTTCGCGGCGGAGCTG
TACGACGAATATGTCTACCTGCCGACTGGGGAGGACCTGAGGAAAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCAGCTTTCAGACGGTAGCG
TCCACCTTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGA
ATATGTCTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGT
ACGATCGCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCAC
ATCTACTGGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAA
AGAGGGGAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGC
GCGTTCTGGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACC
ATCATCCGCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTA
TACGGAGCAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGG
AAAAGGGGTGCTATCTGCTGGTGGACAATGGGTACCACAAGGTGAATCTT
CGACGAGGAGAGAGCCCCGAGTGTGTGTCGTGTGTGTGTGCGCGCTGTGT
GTGTGTGCGTGTTGAGTGTGTGTCAATGCGTACCGCCGTCTCGTACGTGT
ACGTATCTAGTATCTACCATCTTTTTCCTATTTTCCTGGTAGTTGCCAGC
GGCGCTTTTTGCATTTTTTTTTGTTCTTGGTAAGCGGCCGGAACAGTTTC
TGCAACCTTCTGTGCGTCGCCGGGGAAAGAAAGAAACACTTGCCCAGACG
GGTTCGTCTCCGGAAGTTCGATTTTTTGTGATGTTTGATTCCGCGACAGC
AGTCAACTAGGCCCTCTGCGGCGCGGCGTTGGCAGATTGCGGCTTCTCTT
GTAAAGAAAAATACCAACCACTTGACAACACCAATACAAGGAGAGAAAGG
TCCGCGGTATTGGAGAAATCCTTGGCGTGAGAACACTATGAGGTCTTAAC
CGCGTGCTTAATTCTCTTCCCCTCTACCTCTGCCCGTTGCCCTCTTGCTC
TCCCGCCCGCCCGCCCCCCCGCTCTTCCCCGCAAACTACCCCTTCCCTTC
CGACAGTGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGG
CGACCTCATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAAT
GCTACTTCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATC
GGCTTTCACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCAT
CCTCCACAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGG
AGCCCAACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGAC
CCCAACACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGC
GGTCGAGGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGA
ACTTCGTGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAG
GGGAGGAAGGCGGTGCTGTTCTGGCCGTAGGTTTGACTCTAGGGTAACCA
TGTGCGAGCGTTGTGACGGTTATTTTTGCGGCAACAACGCGTTCGTGCAC
GTATATACAAGCTCACAGCCGGGAGATTGGTGGGGGTGGCGGGCAGCCAA
TTTCAGCAACACGTAGCATCGGCTGTGTGTACGGGCGCGGACTTTTTTTC
GAAGTTTCACCAGAACACATAACTGAAACGTAGCGATACGCAGGGATTCA
CAGTTTCGAAGTAGGGATTCACAGTTTCGAAGTTTCATCAGAACAAAACA
CTGAAACGTGGCGATACGCAGGGATTCACAGTTTCGAAGTTTCATCAGAA
CCAAATACTGAAACGTAGCGATACGCAGGGATTCGCAGCCTGTGTCATGT
GTACGTTGTCATCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAA
CCTGGACTTCGGGG back to topCoding sequence (CDS) from alignment at Scaffold_370:526425..531788- >EsuBft213_8a-0001 ID=EsuBft213_8a-0001|Name=EsuBft213_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_370:526425..531788- (Ectocarpus subulatus male Bft15b) ATGCGTGTCGCAGTGCCGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCT CGGCTGTGCACTTGTATTGCCCGCGGGACGTGTGGTTCACCGCCAAATGG CCGAGACAGCAACCGAAAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCC ACCACGGCGGTAGCTACTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGC CGTCTGGGACGTTATCATGGAAGACTTCGAAGACGATCTAGAGCTGGATA CAGAGGACGATGAAGCGTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTT CGTAAAGACTACACGAAGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCG AGAGACAGGCGAGACAGATCACACAACCCGGGAAGCGCGGCGTTTTCGCA ACAACTTCCGCGTCCCCTACCCGTTTTTCGTGCACTTGGTGGGGCTGGTG AGGGACAGAGACTGGTTCCCAACCGGGGAGTCGGATGTCACGGGTCGCCA AGCCGTCCCTGTTGAGTTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCA GAGGAAATGTGTTCGCAGATATCTACCACATGTCCTTCATCAGCTTTCAG ACGGTGGCGTCCACCTTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCT GTACGACGAATATGTCTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCA TGGAGCAGTACGATCGCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGAC GTCACCCACATCTACTGGGGCATGTGCCCCTACAACCAAGCCCGCATTTA TACGGGCAAAGAGGGGAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACC ATAGCGGGCGCGTTCTGGCGGTGACCCGAGGGTTTACGGGGGCGACGAAC GACAAGACCATCATCCGCTACGACAAGGCGGTGACGCGCATCCGGACGGA TCCTGTGTATACGGAGCAGAAGTACAAGCTGTACGCGCAGGATGGACAGC AGTTCGAGGAAAAGGGGTGCTATCTGCTGGTGGACAATGGGTACCACAAG TGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGGCGACCT CATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAATGCTACT TCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATCGGCTTT CACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCATCCTCCA CAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGGAGCCCA ACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGACCCCAAC ACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGCGGTCGA GGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCG TGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAG back to top
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