EsuBft213_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft213_3a-0001
Unique Name	EsuBft213_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:601018..602447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft213_3
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	105
Hectar predicted targeting category	other localisation
Evalue	6.24e-95
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft213_3a	EsuBft213_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 601018..602447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_3a-0001-exon	EsuBft213_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 601018..601237 +
EsuBft213_3a-0001-exon	agat-exon-95906	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 601618..602447 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_3a-0001-cds	EsuBft213_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 601018..601237 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_3a-0001	EsuBft213_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 601018..602447 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:601018..602447+
coding sequence from alignment at Scaffold_370:601018..602447+

spliced messenger RNA

>EsuBft213_3a-0001 ID=EsuBft213_3a-0001|Name=EsuBft213_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1050bp|location=Sequence derived from alignment at Scaffold_370:601018..602447+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAA
ATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAA
CATTGTTCCAGGTGTTCATTAACGATCTGTTGGAAGTCGTAGAGGCAGTC
CGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTGTCAGAAATGCT
GTTTGCGGATGATTTTGTCGTAGTGGACCAGTACACATACCTCGGAGTAG
AGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAA
AAGGGCAAATCACGAGCAGGGAAGCTGCACCCAATATTCGCAAACCGGCA
CCTCGATACACGCATCAAATTGGCAATCTTGAAGAGCGTAATCGTACCGC
CGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAA
GAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCTAGGATGCTC
CACGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCC
TACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGC
GGGATGGGAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGC
AAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGG
ACGTATGTAAGGGGTTCGAAATCGATGAAGATGAAACGCCGGAAACGGAG
GGTCTACATGGGTCCAAGGAGAAGGTATCTGTTGCTTGTGCCGAGGGAGA
ACAGAATCTAGGGAAAGAAACCGAGGAGAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAAAAGGGTTCAAAGATTACCTACATGGACCAAGG
GATGCAGGGACGAAGCCTAAGGTCAGATTCAGGACCGGGGACATGGATAG
GCCTTCGAGGACGTCAACGAAGACCTGGGACGGTTTGACGACGAAGGCGA
CAAGTTCAAATGTGATTGCGGCCTCGAGTGCGACGACCGTGTTCATGTAG

protein sequence of EsuBft213_3a-0001

>EsuBft213_3 ID=EsuBft213_3|Name=EsuBft213_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=349bp
MTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAV
RKGVKVGDTETSVSEMLFADDFVVVDQYTYLGVEIAKDCSWNAHMSKVAE
KGKSRAGKLHPIFANRHLDTRIKLAILKSVIVPPLEYAGEVWEGNKKVVK
ELEAAQMKAAKIILGCSTRTSNAAVRAELGIQSLRSGRDARKLTWQYRMC
GMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVCKGFEIDEDETPETE
GLHGSKEKVSVACAEGEQNLGKETEEKEGLEVYGMLKEGKGFKDYLHGPR
DAGTKPKVRFRTGDMDRPSRTSTKTWDGLTTKATSSNVIAASSATTVFM

mRNA from alignment at Scaffold_370:601018..602447+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft213_3a-0001 ID=EsuBft213_3a-0001|Name=EsuBft213_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1430bp|location=Sequence derived from alignment at Scaffold_370:601018..602447+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAA
ATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAA
CATTGTTCCAGGTGTTCATTAACGATCTGTTGGAAGTCGTAGAGGCAGTC
CGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTGTCAGAAATGCT
GTTTGCGGATGATTTTGTCGGTACGTCGGACACCCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCAACGAGAACAA
GGAGAAACCAGTAGAACATAGATAGAAGTGGGGGATCGAGGAGATTGCAG
TAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCG
TGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGG
GAAGCTGCACCCAATATTCGCAAACCGGCACCTCGATACACGCATCAAAT
TGGCAATCTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAA
GTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGAT
GAAAGCAGCGAAAATCATCCTAGGATGCTCCACGCGCACAAGTAATGCAG
CCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCG
AGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTT
GCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGAC
AACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGTAAGGGGTTCGAA
ATCGATGAAGATGAAACGCCGGAAACGGAGGGTCTACATGGGTCCAAGGA
GAAGGTATCTGTTGCTTGTGCCGAGGGAGAACAGAATCTAGGGAAAGAAA
CCGAGGAGAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAAAA
GGGTTCAAAGATTACCTACATGGACCAAGGGATGCAGGGACGAAGCCTAA
GGTCAGATTCAGGACCGGGGACATGGATAGGCCTTCGAGGACGTCAACGA
AGACCTGGGACGGTTTGACGACGAAGGCGACAAGTTCAAATGTGATTGCG
GCCTCGAGTGCGACGACCGTGTTCATGTAG

Coding sequence (CDS) from alignment at Scaffold_370:601018..602447+

>EsuBft213_3a-0001 ID=EsuBft213_3a-0001|Name=EsuBft213_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1050bp|location=Sequence derived from alignment at Scaffold_370:601018..602447+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAA
ATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAA
CATTGTTCCAGGTGTTCATTAACGATCTGTTGGAAGTCGTAGAGGCAGTC
CGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTGTCAGAAATGCT
GTTTGCGGATGATTTTGTCGTAGTGGACCAGTACACATACCTCGGAGTAG
AGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAA
AAGGGCAAATCACGAGCAGGGAAGCTGCACCCAATATTCGCAAACCGGCA
CCTCGATACACGCATCAAATTGGCAATCTTGAAGAGCGTAATCGTACCGC
CGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAA
GAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCTAGGATGCTC
CACGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCC
TACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGC
GGGATGGGAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGC
AAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGG
ACGTATGTAAGGGGTTCGAAATCGATGAAGATGAAACGCCGGAAACGGAG
GGTCTACATGGGTCCAAGGAGAAGGTATCTGTTGCTTGTGCCGAGGGAGA
ACAGAATCTAGGGAAAGAAACCGAGGAGAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAAAAGGGTTCAAAGATTACCTACATGGACCAAGG
GATGCAGGGACGAAGCCTAAGGTCAGATTCAGGACCGGGGACATGGATAG
GCCTTCGAGGACGTCAACGAAGACCTGGGACGGTTTGACGACGAAGGCGA
CAAGTTCAAATGTGATTGCGGCCTCGAGTGCGACGACCGTGTTCATGTAG