EsuBft213_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft213_17a-0001
Unique NameEsuBft213_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:451632..455851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8A8
ProteomeIdEsuBft213_17
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsIPR002110
Protein domainsPTHR24198
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin repeat and kh domain-containing protein mask os:drosophila melanogaster gn:mask pe:1 sv [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1872
Hectar predicted targeting categorysignal peptide
Evalue1.24e-181
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-19_003780.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein ubiquitination
COG categoryI
Cross References
External references for this mRNA
DatabaseAccession
GO0050789
GO0031227
GO0097159
GO1901363
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17aEsuBft213_17aEctocarpus subulatus male Bft15bgeneScaffold_370 451632..455851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17a-0001EsuBft213_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 451796..455232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17a-0001-exonagat-exon-95998Ectocarpus subulatus male Bft15bexonScaffold_370 451632..452207 +
EsuBft213_17a-0001-exonagat-exon-95995Ectocarpus subulatus male Bft15bexonScaffold_370 452537..452645 +
EsuBft213_17a-0001-exonEsuBft213_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 453101..453138 +
EsuBft213_17a-0001-exonagat-exon-95996Ectocarpus subulatus male Bft15bexonScaffold_370 454463..454574 +
EsuBft213_17a-0001-exonagat-exon-95997Ectocarpus subulatus male Bft15bexonScaffold_370 454815..455851 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17a-0001-exonagat-five_prime_utr-5435Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 451632..451795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17a-0001-cdsEsuBft213_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 451796..452207 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_17a-0001-exonagat-three_prime_utr-8407Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 455233..455851 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft213_17a-0001 ID=EsuBft213_17a-0001|Name=EsuBft213_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1872bp|location=Sequence derived from alignment at Scaffold_370:451632..455851+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGGCACACCACGTCCCGCAGCTGCGGCAGCAGCGAAAAGGAGAGCTAA
GGGTCAGCGTCAGACCAGCACGCAGCGTGGCAGAGGCCCGCCGATTTCCT
CTCACGTCAACCCCTTCTCTTGCGCAGGAGGAAAATAACAAGAGTGGTGT
GCTTGCAACAATATATGATGGCGGCCTCCAGCGTTACGGCTCGAGCACGC
ACGACAGCGGCTCCGTCGCTAGCTCTCCTCCTGCTGCTGCTGCTCGGGAG
CGAGCGCTACACCCCCTCGTGCCTGGGCTTCTCCCTTTCCGTCGCACCAA
CATCGGCGGTACGATCGCCAGCAGCCCGACCGGTAACAGCACCCGTTGGA
CGCTATGGCAAGAGCAGCAGCAGCTGCCGCGTGGACGTGTCCTGTGTACG
TGGCCGAACATGCTCGGCGCTTGCAGCGTTCGGCGAAGGGGAAGGGGAAG
GGAGTTCCGCGGGGCCTAGTGCAGGAGGATCGGGAGACATTTTTGACGCC
CTGATGGCTGGGGATATGGACTTCGTCACTAAGTATGTGGAGGCTGGGGG
CGACTGCTCTGTGCAGGACTCCATAGGGGACACGCCGCTGATGCTAGCGG
TGGAAAACGAGCTGACGCCTGCCGTGAGGATGCTCATCAAGGAAGGAGGG
GCGAACGCCAACCTTGCCTCCAAGACTACGGGAGAGACACCTCTCATGCT
GGCGGCATACTACGGACACACAAACCTTGCACGAGTACTCGTCACGGAAG
GCGACGCGGAGCTAGAGCTGCGCAATAACAAGGGGGACACGGCGCTGAGC
CTGGCTTGCTTCTGGGGAAACGAGGATGCGGTCGAGTATCTTCTCAACGC
CGGGGCGGATCCGAACAGCCGTAACGACGCGGGTGAGCGGCCCGGAGACA
GCTTCGACTCTGTTTTCGTGCCCCAAGTTGTCGAGAACTTCTTCACCGCG
GACGAAGACAACGAACGCGCAAGTGCCGCCGGCCAGGAAGACATCATGTT
CGACGACGATGACGAAGAGGACATCATGTTCGAGGAATTGGATGAAAAGG
ACGCCAATCTCCAAGAGGGAGATGATAAAGACGTGAGGGTTGACGGTGGA
GAGGAGAAGGAGCCCGCTGAGAAGGAGGACGCATCGTTGGCAGGGGAGAA
GGGTGGAGATGGCGAGCCAGAGGAAGAGGTTCTAGGCCCAAGGGAAAACA
TCCTCAAGATGCTGGAAGAAGCGCGGGCAGAAGCGGCCCTCGAGGCCAAC
TAACGGTAGCGCCACCAGCTATGGACATGCGCTTCTTCTCTCAGCAGATG
TTTCTCGTTGAGATTCCGGCGGTTGACACCCACCTGTGACCGCGATGGTA
CGGTGTGGGCTTGCGGACCGTTCACAAGAGGAAGCACCGTGACAGCCGTT
TATTGTCAAGTACGGGGGGGTCAGGTAGGAGGCCGGTAGCAGGACGGTCC
AGAGGTTTGGACGGCTGTTGTCTGCTCTTTCTCTTGGTACACCCGGGAAG
GTTGGGGTTCACGGAGTCTTTCTGTATTGCCTCGGCTCCACAAGCCATGC
CAAAGAATGTGCTCGGGATGAGGCACAAGGGATAGTGGAGAAGGAAGCTG
CACGACCACCAAAGCACAAGATTGCAGCTTTCTAGCCGCGAACCTAGATT
CGGTTGAATGACTACGCGAAGAAGATTACGGCCGTTGCTAGCAAGGAGAC
GACACGACGAGCTACCTACATGCAGATCTCGTTTGAGTGGACTTGTGAAT
ACCGCAGTGCGAGTCATCGCACACACCTAGACCGACTTTCATCGCTCGAT
TGCTCGCTCATGCGATCGAGGGCTCGCTAACGAGACAGGGTGAGGCGCTC
ATCAAAAGAGAACCATGAGTCC
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protein sequence of EsuBft213_17a-0001

>EsuBft213_17 ID=EsuBft213_17|Name=EsuBft213_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MMAASSVTARARTTAAPSLALLLLLLLGSERYTPSCLGFSLSVAPTSAVR
SPAARPVTAPVGRYGKSSSSCRVDVSCVRGRTCSALAAFGEGEGEGSSAG
PSAGGSGDIFDALMAGDMDFVTKYVEAGGDCSVQDSIGDTPLMLAVENEL
TPAVRMLIKEGGANANLASKTTGETPLMLAAYYGHTNLARVLVTEGDAEL
ELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSV
FVPQVVENFFTADEDNERASAAGQEDIMFDDDDEEDIMFEELDEKDANLQ
EGDDKDVRVDGGEEKEPAEKEDASLAGEKGGDGEPEEEVLGPRENILKML
EEARAEAALEAN
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mRNA from alignment at Scaffold_370:451632..455851+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft213_17a-0001 ID=EsuBft213_17a-0001|Name=EsuBft213_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4220bp|location=Sequence derived from alignment at Scaffold_370:451632..455851+ (Ectocarpus subulatus male Bft15b)
GCGGGCACACCACGTCCCGCAGCTGCGGCAGCAGCGAAAAGGAGAGCTAA
GGGTCAGCGTCAGACCAGCACGCAGCGTGGCAGAGGCCCGCCGATTTCCT
CTCACGTCAACCCCTTCTCTTGCGCAGGAGGAAAATAACAAGAGTGGTGT
GCTTGCAACAATATATGATGGCGGCCTCCAGCGTTACGGCTCGAGCACGC
ACGACAGCGGCTCCGTCGCTAGCTCTCCTCCTGCTGCTGCTGCTCGGGAG
CGAGCGCTACACCCCCTCGTGCCTGGGCTTCTCCCTTTCCGTCGCACCAA
CATCGGCGGTACGATCGCCAGCAGCCCGACCGGTAACAGCACCCGTTGGA
CGCTATGGCAAGAGCAGCAGCAGCTGCCGCGTGGACGTGTCCTGTGTACG
TGGCCGAACATGCTCGGCGCTTGCAGCGTTCGGCGAAGGGGAAGGGGAAG
GGAGTTCCGCGGGGCCTAGTGCAGGAGGATCGGGAGACATTTTTGACGCC
CTGATGGCTGGGGATATGGACTTCGTCACTAAGTATGTGGAGGCTGGGGG
CGACTGCTCTGTGCAGGACTCCATAGGTGAGTGTGCAGAGGCGAGAGATA
GAGGGAGAGAGTCCAACACAGATCGCACGTACAGCATCGTGTTTGCCTTA
CCTAGTTGTACACCAGCACGCGGCGATGGCAAAAGACAGGCAATCATCCT
GTGCAACTGTGGCACGATGTACTCCGAGTACACAGCAAAAAGAGACCAGA
TCGGCCCAGCAGTGTTGCTTTATACCCCTGGATACAGCAATGGATACAAC
GGCGTAACCGCTGGCATTGGTGGCAACAAGATGGTGCGCACAGTGGTACG
TCCGTCTCTCCGATATGTGTTCGGTCCTGTCCATACTTCTTGTTCGGTTT
TCCAGGGGACACGCCGCTGATGCTAGCGGTGGAAAACGAGCTGACGCCTG
CCGTGAGGATGCTCATCAAGGAAGGAGGGGCGAACGCCAACCTTGCCTCC
AAGACTACGGGAGAGTAAGTAGAGGTGTGCGTCAAACCACTACAATCGGT
ACTTGTACTTGTGCGAGCCGCTCAGTGAACGTGTCGTGATACATCCGGTT
AGGTGTTTGGCAGTGGAGGCGGCGTGTTAGAGCAAGAGGGTATCTCATTT
TTCGGTTTCGACACCAAGTACGCCTCGGACAAGACGCAGGACGCGTGCGT
GTCACGCTGTTTTTTCGGCTGTGTTTGTCTGACATGCTCGCACGCCGTAA
GTTCATGTAGCGCCTCCATATGGTTCCTAGAAACGCAAGGACGTGAGGGG
CTGTCGATTGTTTTGGTGATTGCGATAACGACAATGTTTGCGGTGACGCC
GGCATGCGATTTCGTTGGGCGGGCAGCTTGCAGCGGTACACAATGCCAAC
CCGCCGTCCCGACGGCTGTTCCCGCCCCGGTCTCTTGCCACACACACCCG
CGACACGCGTACCGACCAGGACACCTCTCATGCTGGCGGCATACTACGGA
CACACAAGTGAGGAGATATTGGATTCGAACAGACCACTGCCACACCTCTT
GAGCCGGCTGTGGTACCAGCGCCACCGTACGCTCAGCTGTCGTCGCCCTT
TGTCAACGCGGATGCTATGTAGCCTAAAAGTTGTGTCGTGCTAAGCCCTC
AACGAAGCACGCAGGCCTCGCACCCACCTACGTCGGGAATCACAACAACA
CAGCGCTGCAAAGCTCGTTGTTTGTAAACGATATTCGACTTCGTAAGTCG
CGAGGGAAGGGATTGCTGTACCCTTCTCGCGACAAAAATACCTCAGGCAG
CAACCGCAGGAGGGGGTCCAGCCCCCCCCTCTTATGTGACCCCGGTTGGG
TCGTCTAGCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACGACAG
AGTGCAATGATGGGAGAAAAAAAAAAAATCCCTAGAACGCCGCGCTGTTA
TCGCATCGAGCGCTGTTTTCGCCTGGAGCAGAGAGTTTGGATGATCTCTC
CTTTACCGCGCTGATCCAAGGTCTTCTCGGTCATATGGGTTCCCTCCTCT
TTTCCAACCGTTGGCGGGAGTATGGCAACTCCGAGGAACGTAGACCTTGT
ACAAGTGTTCCGTGCCTTCTGACTTACCCATAACCCCTTCCCCTCCCCTC
CATGAATGGTGGTCGAGTAGATTATGTTGTGCGGGGTCGAGAAGCCTCAC
CTCGCGCAATGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCAC
CCTCGAGGCAGTTACACAGTGCTTACAACTGTCTTTGGAAATGAAAGCAC
CAAAAAATAAATGAAGTCCTACGCAGCTGTCATCCGTACGCAAGGAAGTA
AGCGCAAGATGCCGAACACCCTTAGCAAGATGCAGCGCACCCTTCATGCG
ACTCGCCGAACACCTCACGGAGCTTTGCGCTTGGTGATGTGAGAGCCTGG
TCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGT
CAATGGTCTGACGACGACGGCATGCACGACTATGAGTACCCCCTCCCCCC
CTCCTGTTCTCTAGTACGCGTTGTGTTCAATGGTCTTACTGCTAAGGCAT
GCAAAACATGAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCC
CCCCCCCCCCCCCCCACCCCCCCCACTTCGATCCTACTTCTCATCATGCA
ACGCCTTACACCTTGCCCGTGGCCCCTGGTTTCTGCTTCGTTGGCCTACC
CCCGTCCCTCTGTGCTGTGACTTGAGCGCAGACCTTGCACGAGTACTCGT
CACGGAAGGCGACGCGGAGCTAGAGCTGCGCAATAACAAGGGGGACACGG
CGCTGAGCCTGGCTTGCTTCTGGGGAAACGAGGATGCGGTCGAGTGAGTG
AAACTTGGGCTGAATCTTCATGTTCAATTCCACCAAACGGTAGTCAATTC
AAACCGGGATCCCGGCCACTGCCCTGCAGAAGTATTCCACGCTACGAGGG
TCCCCCAAGGTGTACCTTGGGATGCAAAGAAGACATGGGGTCGTTTCTGT
TCACTCTTCTCTCTCACCTCCCTCCGCTGTGCATACTACATCAAGGGTTA
TTTCATGCCTCTTTTTCTTCTTATGTTGGAAAGGTATCTTCTCAACGCCG
GGGCGGATCCGAACAGCCGTAACGACGCGGGTGAGCGGCCCGGAGACAGC
TTCGACTCTGTTTTCGTGCCCCAAGTTGTCGAGAACTTCTTCACCGCGGA
CGAAGACAACGAACGCGCAAGTGCCGCCGGCCAGGAAGACATCATGTTCG
ACGACGATGACGAAGAGGACATCATGTTCGAGGAATTGGATGAAAAGGAC
GCCAATCTCCAAGAGGGAGATGATAAAGACGTGAGGGTTGACGGTGGAGA
GGAGAAGGAGCCCGCTGAGAAGGAGGACGCATCGTTGGCAGGGGAGAAGG
GTGGAGATGGCGAGCCAGAGGAAGAGGTTCTAGGCCCAAGGGAAAACATC
CTCAAGATGCTGGAAGAAGCGCGGGCAGAAGCGGCCCTCGAGGCCAACTA
ACGGTAGCGCCACCAGCTATGGACATGCGCTTCTTCTCTCAGCAGATGTT
TCTCGTTGAGATTCCGGCGGTTGACACCCACCTGTGACCGCGATGGTACG
GTGTGGGCTTGCGGACCGTTCACAAGAGGAAGCACCGTGACAGCCGTTTA
TTGTCAAGTACGGGGGGGTCAGGTAGGAGGCCGGTAGCAGGACGGTCCAG
AGGTTTGGACGGCTGTTGTCTGCTCTTTCTCTTGGTACACCCGGGAAGGT
TGGGGTTCACGGAGTCTTTCTGTATTGCCTCGGCTCCACAAGCCATGCCA
AAGAATGTGCTCGGGATGAGGCACAAGGGATAGTGGAGAAGGAAGCTGCA
CGACCACCAAAGCACAAGATTGCAGCTTTCTAGCCGCGAACCTAGATTCG
GTTGAATGACTACGCGAAGAAGATTACGGCCGTTGCTAGCAAGGAGACGA
CACGACGAGCTACCTACATGCAGATCTCGTTTGAGTGGACTTGTGAATAC
CGCAGTGCGAGTCATCGCACACACCTAGACCGACTTTCATCGCTCGATTG
CTCGCTCATGCGATCGAGGGCTCGCTAACGAGACAGGGTGAGGCGCTCAT
CAAAAGAGAACCATGAGTCC
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Coding sequence (CDS) from alignment at Scaffold_370:451632..455851+

>EsuBft213_17a-0001 ID=EsuBft213_17a-0001|Name=EsuBft213_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_370:451632..455851+ (Ectocarpus subulatus male Bft15b)
ATGATGGCGGCCTCCAGCGTTACGGCTCGAGCACGCACGACAGCGGCTCC
GTCGCTAGCTCTCCTCCTGCTGCTGCTGCTCGGGAGCGAGCGCTACACCC
CCTCGTGCCTGGGCTTCTCCCTTTCCGTCGCACCAACATCGGCGGTACGA
TCGCCAGCAGCCCGACCGGTAACAGCACCCGTTGGACGCTATGGCAAGAG
CAGCAGCAGCTGCCGCGTGGACGTGTCCTGTGTACGTGGCCGAACATGCT
CGGCGCTTGCAGCGTTCGGCGAAGGGGAAGGGGAAGGGAGTTCCGCGGGG
CCTAGTGCAGGAGGATCGGGAGACATTTTTGACGCCCTGATGGCTGGGGA
TATGGACTTCGTCACTAAGTATGTGGAGGCTGGGGGCGACTGCTCTGTGC
AGGACTCCATAGGGGACACGCCGCTGATGCTAGCGGTGGAAAACGAGCTG
ACGCCTGCCGTGAGGATGCTCATCAAGGAAGGAGGGGCGAACGCCAACCT
TGCCTCCAAGACTACGGGAGAGACACCTCTCATGCTGGCGGCATACTACG
GACACACAAACCTTGCACGAGTACTCGTCACGGAAGGCGACGCGGAGCTA
GAGCTGCGCAATAACAAGGGGGACACGGCGCTGAGCCTGGCTTGCTTCTG
GGGAAACGAGGATGCGGTCGAGTATCTTCTCAACGCCGGGGCGGATCCGA
ACAGCCGTAACGACGCGGGTGAGCGGCCCGGAGACAGCTTCGACTCTGTT
TTCGTGCCCCAAGTTGTCGAGAACTTCTTCACCGCGGACGAAGACAACGA
ACGCGCAAGTGCCGCCGGCCAGGAAGACATCATGTTCGACGACGATGACG
AAGAGGACATCATGTTCGAGGAATTGGATGAAAAGGACGCCAATCTCCAA
GAGGGAGATGATAAAGACGTGAGGGTTGACGGTGGAGAGGAGAAGGAGCC
CGCTGAGAAGGAGGACGCATCGTTGGCAGGGGAGAAGGGTGGAGATGGCG
AGCCAGAGGAAGAGGTTCTAGGCCCAAGGGAAAACATCCTCAAGATGCTG
GAAGAAGCGCGGGCAGAAGCGGCCCTCGAGGCCAACTAA
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