EsuBft213_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft213_15a-0001
Unique NameEsuBft213_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:476026..477183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft213_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length109
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft213_15aEsuBft213_15aEctocarpus subulatus male Bft15bgeneScaffold_370 476026..477183 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_15a-0001-exonEsuBft213_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 476026..477114 -
EsuBft213_15a-0001-exonagat-exon-95986Ectocarpus subulatus male Bft15bexonScaffold_370 477181..477183 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_15a-0001-exonagat-three_prime_utr-8406Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 476026..477054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_15a-0001-cdsEsuBft213_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 477055..477114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_15a-0001EsuBft213_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 477055..477183 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft213_15a-0001 ID=EsuBft213_15a-0001|Name=EsuBft213_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_370:476026..477183- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCGCTGACGGTTTCAGGGGTTGGCGTGCGTGTGGTGGTGGAGTT
GGGTCGGCACTGATGGGGTCAGGCGGGAAAATGTAGATGCGCGGGCCTTT
CTGGCCGTCGGCGTTGGCAGTGATGCCCATCTCATTTTTGTGCGCGGAGG
CAGACATCATCAGAAAGGTGGACGGGCACTACACGGCCCTAGGTTTGCTA
GAGGGAGCTGTATTGCCTCAGTAACCTGGCTTCGCCATCAAAGGAGGAGG
GAGCAGGTGGCGACGAGCTGAACTAGGCTGGTTGACCATTCGGCGCGAGA
ATTTTTATTTTTTTCAGACCAAGAACCTTGAGTGCAATGAGGGAGAAAGC
GAGGAACGGACTGGGAAGGACAGCGACGAGAGCGTGTACGGACGGAGCAG
GTCGAGTGGCGTTTTGCTCGGGCTGACTACAGCGGCGCCGGATGGAGCAA
TGGCACCGGAGCATGCGGGCGACATCGACCCGTGGCGCACGGACAAACAT
TTCTATCTGTGTTGTCAATTTTTTTCGTTTTTTTTCTGACTTTCCGTGTT
GGTTTTGTGTGATGACATCGTCACCGGTTTTGTAGAGAGACCCGTCAGAG
ATGGCGTGGCTAACCCGGGTGCATTGGTTTTGTGCCTGATCGTGGAAGAC
CCCTTCAATGTGGAACGATTCTTAGCTAGTGTCGATATTTTTCACTGCAG
TGCCTAACACAGACGATCGGGAGAGATTCGGGTGATTGTCAATTGCTGCT
ATGATGGCTTTGGTTGGTTGTTCTTTTTCACTGTACGGCCGCAGACACAT
TCTGACAGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTGCTTGTTCC
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCATTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGC
ACGCATACGGTGCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGC
ATACCTTTTTCTCGTCAGATGTGTGCGTGTTCTTTAGATCCT
back to top

protein sequence of EsuBft213_15a-0001

>EsuBft213_15 ID=EsuBft213_15|Name=EsuBft213_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=20bp
MLALTVSGVGVRVVVELGRH
back to top

mRNA from alignment at Scaffold_370:476026..477183-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft213_15a-0001 ID=EsuBft213_15a-0001|Name=EsuBft213_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1158bp|location=Sequence derived from alignment at Scaffold_370:476026..477183- (Ectocarpus subulatus male Bft15b)
ATGGTATAGTCTATGACTAAAACAACCAACTTGGTGGTTGTTGTAGTCAT
ATACTATATTGGTATATAGTTGGCGCTGACGGTTTCAGGGGTTGGCGTGC
GTGTGGTGGTGGAGTTGGGTCGGCACTGATGGGGTCAGGCGGGAAAATGT
AGATGCGCGGGCCTTTCTGGCCGTCGGCGTTGGCAGTGATGCCCATCTCA
TTTTTGTGCGCGGAGGCAGACATCATCAGAAAGGTGGACGGGCACTACAC
GGCCCTAGGTTTGCTAGAGGGAGCTGTATTGCCTCAGTAACCTGGCTTCG
CCATCAAAGGAGGAGGGAGCAGGTGGCGACGAGCTGAACTAGGCTGGTTG
ACCATTCGGCGCGAGAATTTTTATTTTTTTCAGACCAAGAACCTTGAGTG
CAATGAGGGAGAAAGCGAGGAACGGACTGGGAAGGACAGCGACGAGAGCG
TGTACGGACGGAGCAGGTCGAGTGGCGTTTTGCTCGGGCTGACTACAGCG
GCGCCGGATGGAGCAATGGCACCGGAGCATGCGGGCGACATCGACCCGTG
GCGCACGGACAAACATTTCTATCTGTGTTGTCAATTTTTTTCGTTTTTTT
TCTGACTTTCCGTGTTGGTTTTGTGTGATGACATCGTCACCGGTTTTGTA
GAGAGACCCGTCAGAGATGGCGTGGCTAACCCGGGTGCATTGGTTTTGTG
CCTGATCGTGGAAGACCCCTTCAATGTGGAACGATTCTTAGCTAGTGTCG
ATATTTTTCACTGCAGTGCCTAACACAGACGATCGGGAGAGATTCGGGTG
ATTGTCAATTGCTGCTATGATGGCTTTGGTTGGTTGTTCTTTTTCACTGT
ACGGCCGCAGACACATTCTGACAGCACTTCAGACAGCAGCTTTGTGCCCC
GCCAGCTGCTTGTTCCATGCCTACCATGGTGTTTTTGTACAGACAGCACT
TCAGACAGCATTATGCTGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTG
GGACAGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGGACGGACGTGC
AGTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTTTTAGGTGTAC
CTCTTCGGGCTCTTGCATACCTTTTTCTCGTCAGATGTGTGCGTGTTCTT
TAGATCCT
back to top

Coding sequence (CDS) from alignment at Scaffold_370:476026..477183-

>EsuBft213_15a-0001 ID=EsuBft213_15a-0001|Name=EsuBft213_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=63bp|location=Sequence derived from alignment at Scaffold_370:476026..477183- (Ectocarpus subulatus male Bft15b)
ATGTTGGCGCTGACGGTTTCAGGGGTTGGCGTGCGTGTGGTGGTGGAGTT
GGGTCGGCACTGA
back to top