EsuBft213_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft213_11a-0001
Unique NameEsuBft213_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:519219..521838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8A3
ProteomeIdEsuBft213_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length164
Hectar predicted targeting categoryother localisation
Evalue8.89e-67
EggNOG OGs2D0D4@1|root,2SDR5@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11aEsuBft213_11aEctocarpus subulatus male Bft15bgeneScaffold_370 519219..521838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11a-0001EsuBft213_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 520010..520366 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11a-0001-exonEsuBft213_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 519219..520397 -
EsuBft213_11a-0001-exonagat-exon-95956Ectocarpus subulatus male Bft15bexonScaffold_370 520612..520733 -
EsuBft213_11a-0001-exonagat-exon-95957Ectocarpus subulatus male Bft15bexonScaffold_370 521239..521349 -
EsuBft213_11a-0001-exonagat-exon-95955Ectocarpus subulatus male Bft15bexonScaffold_370 521610..521838 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11a-0001-exonagat-three_prime_utr-8403Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 519219..520009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11a-0001-cdsEsuBft213_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 520010..520366 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft213_11a-0001-exonagat-five_prime_utr-5428Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 520367..520397 -
EsuBft213_11a-0001-exonagat-five_prime_utr-5429Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 520612..520733 -
EsuBft213_11a-0001-exonagat-five_prime_utr-5430Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 521239..521349 -
EsuBft213_11a-0001-exonagat-five_prime_utr-5431Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 521610..521838 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft213_11a-0001 ID=EsuBft213_11a-0001|Name=EsuBft213_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_370:519219..521838- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATACGCTCTCTTCATGACCTATTTTGGCATTCGAGTGTAGTCAGTGCGCG
AGAGTCCCTGTTTCACGACCTTTAGTTTTGTCTACGATATAAGAGAATAT
TCTCATATAGTGAGATACTGTTTAAGAGAATTCTCTCTTATACCGTAGCC
AACACGATATAACAGAAAGCCGGATTTAAGAGAGTGAAATTGGCTTGTAC
CGACCCTCTCTTAAACCGTAGCCGCTACTGCGTGACGGCGAGCAACCTTC
CCAAGGTCATCGTGGTGCACGAGTGCTTGAGCGTGGCCTTCCTGGCGCTT
ACCTGGGCTGTCTGCTATCAGATACAGCCCACGCAGGCAAGGCCCGGTGT
TCGCGCCCATCAACAAAACAATCCAAAACAGCAACAACGCCTTCATCGTC
CGGAGTCGCCAGTCCTTCGAGGCCCTCATCTCCAAGTCGGAGAAGCGGCT
TAGCCAAGATTGGCTCAACAAGAGAGGGATCGACTCCGGGAGAATGGCGA
TCTCCCTAGCGGAGTCGACCCTGTTCCGAAAGCTCGCCAAGCCGGTCACC
ATCCCGGGAAAGCTCTGGCTCACGCTCAAGCTCTCGCAAACATTCCTGGT
TGGCGACGACCGCGACAACGGCAATGAAAGCACCAACAGGGTTACCAGAA
GGCCGTTGGTAAAAGAAGCATCTTCGGGGACCGGAGGATGGGGGTGGCTG
AGGAAGGGGAGGCGATCTGGAAAGCGAAGGAAAGCGATTTGCCCCCCCGG
GAGGAGGGGGGGTGGGAGGACGCCTGGCTGCTTTGTTGCCTTACCGCAGG
CCGCTTCTGACCCGTTGTTGTTGCGATCCTCGAAGGAGATTTGTTGGTAG
AAGCTAACGCTGGGGCACACGCCGAGAGGCCCCAAAGCTTGGCAGGGCCC
AGGCTAGTGATGGCGTGCCCTTATTCGGTCCTTTGTGATACTCCCACAGC
TTCCCTTGAAGCAGCAGTGGTGGAGATGGTATGTCGTATCGCGGTGCAGT
GACCGACAAGAAATCTCAACGTTATTTCGGGACCCGCGCTATGGGGAGAG
GGTCCCTGAAAGAAGTTAGAAGCAGGCTAGGTTGCTGTGCCAAATATTTT
TTTCCGCGGTACATGGGGACCACGTTATTCGAGACCGCGATATATTGGGA
CCGCGATGTGTCGGCATCACTGCTGTAGTCGGTCTTGTTTGTTGCCGTCT
TTTCCTACCCCGCTTTGCGCAATCAACGGGGTCGTCTGGAGACTTTTTTG
TGCTTTTGCGTAGAGACAGCTTGTCCGTTTGCCATAGGAGACAACGTCGG
TTGCTAACAGATGACGGACAAGATCACACGAGTTAACGTGTCCGATTATG
CTGTCTCTGTTCACACACAAGGACTGTGTGTGTGCGAGGGTGTGTTTTTT
GTCGCAGTTTCAGCACTAACAGAATGCCGTTCGATTTTTTGCGTGGGTGC
TAACCCACTGTTGTCGCCTTGATTTCTTTTTACACATATTTCGAGTATGT
TTTGGAGGCCCCAGTCGGGATCACAGAGAAAGGTTGAACTACACACCAGG
GTTGCTGCCACCTTTTTCATTGCGTGCCTGCCGTTGTACATCCGTTGTAC
ATGAATTGACAAGGATTCGCCTTTCCATTCCCGCTTTAAGT
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protein sequence of EsuBft213_11a-0001

>EsuBft213_11 ID=EsuBft213_11|Name=EsuBft213_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNRV
TRRPLVKEASSGTGGWGWLRKGRRSGKRRKAICPPGRRGGGRTPGCFVAL
PQAASDPLLLRSSKEICW
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mRNA from alignment at Scaffold_370:519219..521838-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft213_11a-0001 ID=EsuBft213_11a-0001|Name=EsuBft213_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2620bp|location=Sequence derived from alignment at Scaffold_370:519219..521838- (Ectocarpus subulatus male Bft15b)
ATACGCTCTCTTCATGACCTATTTTGGCATTCGAGTGTAGTCAGTGCGCG
AGAGTCCCTGTTTCACGACCTTTAGTTTTGTCTACGATATAAGAGAATAT
TCTCATATAGTGAGATACTGTTTAAGAGAATTCTCTCTTATACCGTAGCC
AACACGATATAACAGAAAGCCGGATTTAAGAGAGTGAAATTGGCTTGTAC
CGACCCTCTCTTAAACCGTAGCCGCTACTGTATCTATATATAAATAGGTC
GTCTTTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCT
CTGTCTCTCTGTCTCTCTGTCTCTCTGTGTGTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTNCCTCTCTCCTTCTCTGGTCTCAAATGGCTAGCGAGCGAC
CTTCAGGGTATGAAAATCATTAGAACGTTTCCACTCTCCCTCGACCTCCT
TGTGCTTCCCCTCCTTACTGCCTCTTCTTGTGCCTACAGGCGTGACGGCG
AGCAACCTTCCCAAGGTCATCGTGGTGCACGAGTGCTTGAGCGTGGCCTT
CCTGGCGCTTACCTGGGCTGTCTGCTATCAGATACAGCCCACGCAGGCAA
GTCACCCAAGAGAGGCCGAGAGAGACGGACGGAGATAGACAGACAGACAG
ACAGTCAGACAGACAGACAAGACAGACAAGACAGACAGACAGGCAGTCAG
TCAGACAGACAGACAGACAGACAGGCAAACAGACAGACAGACAGACGGAC
AGATGAGACTAGAAAGAAATATGCTGCACCGGTAGCACCTTCGAAACCAT
GCATGGCGTCCCCAATCATCGTTTCTCCTAGCTATATGAGCACACCTTAG
CGAGGAAGTATTTTTTCTCTGAGCGATTGTTTCTACCTTCCCGTGACTCA
CCCGTGCCCCCCGTCCCCCCTCTCCCGTCGCTCATGGTAAAAGTGCTCAT
CGATAAAATGTGTCCATGGCACGGCGCAACGTTTAGCTGAGGTACGTGTG
CCCAATTGTGAGAGGACAGTTCACAGATCAGGCAACGGGAACTACCTCTA
AGAAATACGTGCCCTTCCCCCCTTATCCACCTTTGTTCACACTCGATCAA
CGCAGGGCCCGGTGTTCGCGCCCATCAACAAAACAATCCAAAACAGCAAC
AACGCCTTCATCGTCCGGAGTCGCCAGTCCTTCGAGGCCCTCATCTCCAA
GTCGGAGAAGCGGCTTAGCCAAGATTGGTGAGAGACACAAGCTTGATTAT
TGGTACAGCAGGCGTTGTTGCTATTATACTGCCGTTTCGTGTACTGTTTG
TGGGAACAATCGTGCTTCAACGTTTGTATTTGCACTTCCGTTGTTCTCTT
CACGTCCGCTTGTTTGCTGTCCGTATGCGTCACTTTTGCGGGCCTTGTCT
CTTGTTTGTCGACCTTGTTTTAATCTCTACCTTACAACCAGGCTCAACAA
GAGAGGGATCGACTCCGGGAGAATGGCGATCTCCCTAGCGGAGTCGACCC
TGTTCCGAAAGCTCGCCAAGCCGGTCACCATCCCGGGAAAGCTCTGGCTC
ACGCTCAAGCTCTCGCAAACATTCCTGGTTGGCGACGACCGCGACAACGG
CAATGAAAGCACCAACAGGGTTACCAGAAGGCCGTTGGTAAAAGAAGCAT
CTTCGGGGACCGGAGGATGGGGGTGGCTGAGGAAGGGGAGGCGATCTGGA
AAGCGAAGGAAAGCGATTTGCCCCCCCGGGAGGAGGGGGGGTGGGAGGAC
GCCTGGCTGCTTTGTTGCCTTACCGCAGGCCGCTTCTGACCCGTTGTTGT
TGCGATCCTCGAAGGAGATTTGTTGGTAGAAGCTAACGCTGGGGCACACG
CCGAGAGGCCCCAAAGCTTGGCAGGGCCCAGGCTAGTGATGGCGTGCCCT
TATTCGGTCCTTTGTGATACTCCCACAGCTTCCCTTGAAGCAGCAGTGGT
GGAGATGGTATGTCGTATCGCGGTGCAGTGACCGACAAGAAATCTCAACG
TTATTTCGGGACCCGCGCTATGGGGAGAGGGTCCCTGAAAGAAGTTAGAA
GCAGGCTAGGTTGCTGTGCCAAATATTTTTTTCCGCGGTACATGGGGACC
ACGTTATTCGAGACCGCGATATATTGGGACCGCGATGTGTCGGCATCACT
GCTGTAGTCGGTCTTGTTTGTTGCCGTCTTTTCCTACCCCGCTTTGCGCA
ATCAACGGGGTCGTCTGGAGACTTTTTTGTGCTTTTGCGTAGAGACAGCT
TGTCCGTTTGCCATAGGAGACAACGTCGGTTGCTAACAGATGACGGACAA
GATCACACGAGTTAACGTGTCCGATTATGCTGTCTCTGTTCACACACAAG
GACTGTGTGTGTGCGAGGGTGTGTTTTTTGTCGCAGTTTCAGCACTAACA
GAATGCCGTTCGATTTTTTGCGTGGGTGCTAACCCACTGTTGTCGCCTTG
ATTTCTTTTTACACATATTTCGAGTATGTTTTGGAGGCCCCAGTCGGGAT
CACAGAGAAAGGTTGAACTACACACCAGGGTTGCTGCCACCTTTTTCATT
GCGTGCCTGCCGTTGTACATCCGTTGTACATGAATTGACAAGGATTCGCC
TTTCCATTCCCGCTTTAAGT
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Coding sequence (CDS) from alignment at Scaffold_370:519219..521838-

>EsuBft213_11a-0001 ID=EsuBft213_11a-0001|Name=EsuBft213_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_370:519219..521838- (Ectocarpus subulatus male Bft15b)
ATGGCGATCTCCCTAGCGGAGTCGACCCTGTTCCGAAAGCTCGCCAAGCC
GGTCACCATCCCGGGAAAGCTCTGGCTCACGCTCAAGCTCTCGCAAACAT
TCCTGGTTGGCGACGACCGCGACAACGGCAATGAAAGCACCAACAGGGTT
ACCAGAAGGCCGTTGGTAAAAGAAGCATCTTCGGGGACCGGAGGATGGGG
GTGGCTGAGGAAGGGGAGGCGATCTGGAAAGCGAAGGAAAGCGATTTGCC
CCCCCGGGAGGAGGGGGGGTGGGAGGACGCCTGGCTGCTTTGTTGCCTTA
CCGCAGGCCGCTTCTGACCCGTTGTTGTTGCGATCCTCGAAGGAGATTTG
TTGGTAG
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