Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7425.NV18849-PA |
| ProteomeId | EsuBft2112_7 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 963 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.39e-44 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=963bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTCATCCAGGTCCTTGAGGACAACCA
GGGGGCCATAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAA
ATTTCGGTCAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCAC
CAAGGCCCTTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGA
ATTTGCCGGAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTT
TTCCATGCGGGGAAAGGCGCATAACTGTCGCGGTCTGTGTACCAATGGAA
GGAGCAGGGGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGC
GTTCTTGTCTTCGCCTTGGCCCTTCTAATAAGTGCGGCCGTTGTGATCCG
CTGTGATAGCGACGGGGCTTTTTGTGGTGGTAGGGTTTTTCCTTGAGGGG
TTTTGCCCGGACG back to topprotein sequence of EsuBft2112_7a-0001 >EsuBft2112_7 ID=EsuBft2112_7|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR
PDVSFAVRAVARHAYAPAKRHWDAVQKILGYLKGTRDLGIIYQRGSGLGL
AVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA
AGEGVKEAFIQVLEDNQGAIALVQTPLSSGRTKHIDVRFHFIRGLFRSGE
ISVKIVPTTEQHADLLTKALSRASLQYHRRKLKNLPE back to topmRNA from alignment at Scaffold_344:279589..280643- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1055bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTCGTT
TGTCGCCCCAGAGACNTGTTTGTGCGTGCTGTGCTTTCATTTGTTGCCCC
AGACACCAGTGGTAGCAGCATCCAGGTCCTTGAGGACAACCAGGGGGCCA
TAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAACACATCGAC
GTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAAATTTCGGT
CAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCACCAAGGCCC
TTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGAATTTGCCG
GAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTTTTCCATGC
GGGGAAAGGCGCATAACTGTCGCGGTCTGTGTACCAATGGAAGGAGCAGG
GGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTGT
CTTCGCCTTGGCCCTTCTAATAAGTGCGGCCGTTGTGATCCGCTGTGATA
GCGACGGGGCTTTTTGTGGTGGTAGGGTTTTTCCTTGAGGGGTTTTGCCC
GGACG back to topCoding sequence (CDS) from alignment at Scaffold_344:279589..280643- >EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTCATCCAGGTCCTTGAGGACAACCA
GGGGGCCATAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAA
ATTTCGGTCAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCAC
CAAGGCCCTTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGA
ATTTGCCGGAGTAG back to top
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