EsuBft2112_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2112_6a-0001
Unique Name	EsuBft2112_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_344	contig	Scaffold_344:283457..284758 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2112_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	126
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a	EsuBft2112_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_344 283457..284758 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a-0001	EsuBft2112_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_344 284430..284702 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a-0001-exon	EsuBft2112_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 283457..284029 -
EsuBft2112_6a-0001-exon	agat-exon-83801	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 284070..284758 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a-0001-exon	agat-three_prime_utr-8270	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 283457..284029 -
EsuBft2112_6a-0001-exon	agat-three_prime_utr-8271	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 284070..284429 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a-0001-cds	EsuBft2112_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_344 284430..284702 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_6a-0001-exon	agat-five_prime_utr-5360	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_344 284703..284758 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:283457..284758-
coding sequence from alignment at Scaffold_344:283457..284758-

spliced messenger RNA

>EsuBft2112_6a-0001 ID=EsuBft2112_6a-0001|Name=EsuBft2112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1262bp|location=Sequence derived from alignment at Scaffold_344:283457..284758- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGTAGGCCGCAAACACTCTAGAGTTTTGCCCCTCGAGGGAAGCCAC
ATCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGA
ACAGATCCGCCCGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGAT
TGCTACGGCAGATTTCGCATTTGGCGGCCCTGGTGGAGGAGTCGGTGAAG
AAGCAGGAGCCTGGTAGCGTCGTGGCGGATGCAGCCAGTAGTGGCGGCTG
GGTTGCCGCCACCGGAGGCCAAGATCAGCCCCTGCTGCCGCACGGCGGAG
GCGGGGGATTTCTCCAGCAGCAAGCGTGAGAAAGTGGGCAAGGACCACGG
CCGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGG
ACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGG
GGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAATAC
CTCGACGGCTACAGCAGTAGCCACATGAAGAGGGTAACGGTGAATGCTCC
GCTCCTAGACGGAAAAAGCCGTAGCCACGGATTTGACTCGTGGCGAAAAT
CATTCATCCAAGCTGCGAAGACCANTGTCAATGCTCCGCTTCTAGACGGT
AAAAAGCCGTAGCCGCGGATTTGACTCGTGGCGAAAATCTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCAGCGTAGGGCGGAGCATG
CTCTCCTCGCGAGCGACGGTAGGGGCAGGGGAGGAGCGCCAGGCCGCGGC
AACAGCGGCCGC

protein sequence of EsuBft2112_6a-0001

>EsuBft2112_6 ID=EsuBft2112_6|Name=EsuBft2112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MSSAGDEERAAASGEQIRPPVQEGRDAELARLLRQISHLAALVEESVKKQ
EPGSVVADAASSGGWVAATGGQDQPLLPHGGGGGFLQQQA

mRNA from alignment at Scaffold_344:283457..284758-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2112_6a-0001 ID=EsuBft2112_6a-0001|Name=EsuBft2112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1302bp|location=Sequence derived from alignment at Scaffold_344:283457..284758- (Ectocarpus subulatus male Bft15b)
GTGGCGTAGGCCGCAAACACTCTAGAGTTTTGCCCCTCGAGGGAAGCCAC
ATCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGA
ACAGATCCGCCCGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGAT
TGCTACGGCAGATTTCGCATTTGGCGGCCCTGGTGGAGGAGTCGGTGAAG
AAGCAGGAGCCTGGTAGCGTCGTGGCGGATGCAGCCAGTAGTGGCGGCTG
GGTTGCCGCCACCGGAGGCCAAGATCAGCCCCTGCTGCCGCACGGCGGAG
GCGGGGGATTTCTCCAGCAGCAAGCGTGAGAAAGTGGGCAAGGACCACGG
CCGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGG
ACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGG
GGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAATAC
CTCGACGGCTACAGCAGTAGCCACATGAAGAGGGTAACGGTGAATGCTCC
GCTCCTAGACGGAAAAAGCCGTAGCCACGGATTTGACTCGTGGCGAAAAT
CATTCATCCAAGCTGCGAAGACCANTGTCAATGCTCCGCTTCTAGACGGT
AAAAAGCCGTAGCCGCGGATTTGACTCGTGGCGAAAATCGTTCATCCAAG
CTGCGAAGACCATCGACTTGGACGGGCAGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGCCAGCGTAGGGCGGAGCATGCTCTCCTCGC
GAGCGACGGTAGGGGCAGGGGAGGAGCGCCAGGCCGCGGCAACAGCGGCC
GC

Coding sequence (CDS) from alignment at Scaffold_344:283457..284758-

>EsuBft2112_6a-0001 ID=EsuBft2112_6a-0001|Name=EsuBft2112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_344:283457..284758- (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGAACAGAT
CCGCCCGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGATTGCTAC
GGCAGATTTCGCATTTGGCGGCCCTGGTGGAGGAGTCGGTGAAGAAGCAG
GAGCCTGGTAGCGTCGTGGCGGATGCAGCCAGTAGTGGCGGCTGGGTTGC
CGCCACCGGAGGCCAAGATCAGCCCCTGCTGCCGCACGGCGGAGGCGGGG
GATTTCTCCAGCAGCAAGCGTGA