EsuBft2112_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2112_4a-0001
Unique NameEsuBft2112_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:290438..292295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G722
ProteomeIdEsuBft2112_4
Protein domainsIPR002182
Protein domainsIPR027417
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length132
Hectar predicted targeting categoryother localisation
Evalue8.2e-152
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K10407
KEGG Pathwayko05132,map05132
DescriptionADP binding
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0043531
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_4aEsuBft2112_4aEctocarpus subulatus male Bft15bgeneScaffold_344 290438..292295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_4a-0001EsuBft2112_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 290460..292295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_4a-0001-exonagat-exon-83797Ectocarpus subulatus male Bft15bexonScaffold_344 290438..290549 -
EsuBft2112_4a-0001-exonEsuBft2112_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 290706..290995 -
EsuBft2112_4a-0001-exonagat-exon-83798Ectocarpus subulatus male Bft15bexonScaffold_344 291307..291528 -
EsuBft2112_4a-0001-exonagat-exon-83799Ectocarpus subulatus male Bft15bexonScaffold_344 291599..292295 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_4a-0001-exonagat-three_prime_utr-8269Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 290438..290459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_4a-0001-cdsEsuBft2112_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 290460..290549 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2112_4a-0001 ID=EsuBft2112_4a-0001|Name=EsuBft2112_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1321bp|location=Sequence derived from alignment at Scaffold_344:290438..292295- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGTTGGAGGCTTGCCCCAGCCCCGTCCAGGAGGCTCTGCCATG
GATGGCGACATCTGCAGTTGGGGTCCTCGACATTGCGAGCGTTGGGCCAT
TAGAGCCTGTGTGTCAGGCATTCAAGGCGCTGATCGAGGCCGCCGAAGGT
GCAGTCGAATCCCAGGAGAAGCTACAGAGCTTGGTGTCCCGGTGCAGATT
CCTCACAACCGTCTTGATTCGACACCGTCGAGCGGTTGATCCCCTCGCTC
AGGTGCAGACGCCCATCGGGGACTTCGTCGTCACGACCAACAAGCTGGCA
GCATTCGCAGAAAGTGGTCCAGGGGTGGCAAGTGCAGGGCGTTTTTTTTG
CCATCGCACCGACCTGAGCACCCTCACCGACTTTGAGGAGGGTCTCCGCA
GGATCGGCGCCGACATCAACTCGGAAGACGGGCTGGAGTATCACCAGCAG
TCAATCGGACTGGGTCGCGCGTTGCTCCCACCAAGCTTGCCGGACATGGC
CGCAGTCCCCGCAGGAGCGCTTGCGTTGCCCCACAGCTACGTGGAGCGCG
CCGCGGTACAAGAAGTTGCTGACGGCCTCACCAACCCGGAGGAGCCGCGT
GCCCCCTACTCTGCTGTCGGGATGGGTGGAGGGGGGAAGAGCGTGCTTGC
CTCTGCTGTCGTGCGCAAGTCGAGCGTGACTCAACACTTCCGTGGGGGGA
GATGGGCGCTGGGGCATCCACGGGCCTCCCCACGCCTCGTGGTGCTGGAT
GACGTGTGGGAGCCCGAGGTTGTGGACGCGCTTCTTCCTCTGGGATTGAA
GGTGCTTGTGACCACGATTGATCGGTCGGTTCTTGGCGTGTCGTCGGGAT
GCGTGGAGGTGGGAGACATGACGGAGGGAGAGGCGCTGGAGCTGCTGCGG
AAGACGAGTAGGACTGTGGGTCGTTGCGCTCTGTGGACGTCTACCGTTGG
TGCTCGCGATCGCGGGTTCCATGCCCGTCGTGAAAGGAAGGGCTTGACCG
CCGGCGCATGGGGAAAGCTGATCGAATTAGAGGATGTTGCTACGAAGATG
GAGGCTTCCGACGAGGACTCGGATAGTCTTAATGTCGTCCTCGAGACCAG
CTTCAATGCCTTGACGTTAACGAAGAAGAGGGAGTTTAAGAAGTCGGCTG
TGTTGGCGCCGGGTGCCGTTGTGTCGACCGAGATGCTGCTAAACCTGTGG
GAGACAAAGGACACGGGGGGTACGCGAGAGGAAGCTGAGGGTCTGGTAAG
CAAGTGCCTACCTGCACGATGTGGGTGGTGGTGGGTACCGTGTTCATGAC
CTCGTCCTGGACTTTGTGAAA
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protein sequence of EsuBft2112_4a-0001

>EsuBft2112_4 ID=EsuBft2112_4|Name=EsuBft2112_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=432bp
MEELEACPSPVQEALPWMATSAVGVLDIASVGPLEPVCQAFKALIEAAEG
AVESQEKLQSLVSRCRFLTTVLIRHRRAVDPLAQVQTPIGDFVVTTNKLA
AFAESGPGVASAGRFFCHRTDLSTLTDFEEGLRRIGADINSEDGLEYHQQ
SIGLGRALLPPSLPDMAAVPAGALALPHSYVERAAVQEVADGLTNPEEPR
APYSAVGMGGGGKSVLASAVVRKSSVTQHFRGGRWALGHPRASPRLVVLD
DVWEPEVVDALLPLGLKVLVTTIDRSVLGVSSGCVEVGDMTEGEALELLR
KTSRTVGRCALWTSTVGARDRGFHARRERKGLTAGAWGKLIELEDVATKM
EASDEDSDSLNVVLETSFNALTLTKKREFKKSAVLAPGAVVSTEMLLNLW
ETKDTGGTREEAEGLVSKCLPARCGWWWVPCS
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mRNA from alignment at Scaffold_344:290438..292295-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2112_4a-0001 ID=EsuBft2112_4a-0001|Name=EsuBft2112_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1858bp|location=Sequence derived from alignment at Scaffold_344:290438..292295- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGTTGGAGGCTTGCCCCAGCCCCGTCCAGGAGGCTCTGCCATG
GATGGCGACATCTGCAGTTGGGGTCCTCGACATTGCGAGCGTTGGGCCAT
TAGAGCCTGTGTGTCAGGCATTCAAGGCGCTGATCGAGGCCGCCGAAGGT
GCAGTCGAATCCCAGGAGAAGCTACAGAGCTTGGTGTCCCGGTGCAGATT
CCTCACAACCGTCTTGATTCGACACCGTCGAGCGGTTGATCCCCTCGCTC
AGGTGCAGACGCCCATCGGGGACTTCGTCGTCACGACCAACAAGCTGGCA
GCATTCGCAGAAAGTGGTCCAGGGGTGGCAAGTGCAGGGCGTTTTTTTTG
CCATCGCACCGACCTGAGCACCCTCACCGACTTTGAGGAGGGTCTCCGCA
GGATCGGCGCCGACATCAACTCGGAAGACGGGCTGGAGTATCACCAGCAG
TCAATCGGACTGGGTCGCGCGTTGCTCCCACCAAGCTTGCCGGACATGGC
CGCAGTCCCCGCAGGAGCGCTTGCGTTGCCCCACAGCTACGTGGAGCGCG
CCGCGGTACAAGAAGTTGCTGACGGCCTCACCAACCCGGAGGAGCCGCGT
GCCCCCTACTCTGCTGTCGGGATGGGTGGAGGGGGGAAGAGCGTGCTTGC
CTCTGCTGTCGTGCGCAAGTCGAGCGTGACTCAACACTTCCGTGGGGGTA
TTTTCTGGATGAGAGTGGGGAGGGGCGCAACGAATAGCATCCTGCCCCTC
CTACAGGGTCTGGCCAGGGAGATGGGCGCTGGGGCATCCACGGGCCTCCC
CACGCCTCGTGGTGCTGGATGACGTGTGGGAGCCCGAGGTTGTGGACGCG
CTTCTTCCTCTGGGATTGAAGGTGCTTGTGACCACGATTGATCGGTCGGT
TCTTGGCGTGTCGTCGGGATGCGTGGAGGTGGGAGACATGACGGAGGGAG
AGGCGCTGGAGCTGCTGCGGAAGACGAGTAGGACTGTGGGTCAGCCTGGG
GACGCTGTCCGGACGTAGATGACCAAGGTGATGGATGCGCGTTGAATCTT
ACGTCGAGGTAGGGTGTCGTGGTATTTTTTTTAGCTGGTGTTATGACTCC
TTCTCATTTTGAGCGTAACATCGTTGGGGGCTTTGGTGCTGGGTGGACCC
ACATTGTCACACAGCATGGAGTTGGAGGATGTGAGGAATGTTGACAATAG
TATTGGCCCTCCCGAGAACCGGTACCTACGTCGTCACATGGAGTACAGTT
GTGAAGTACTATGAAGTATAATCGTCGAGCTCGATTCAACCCCGATCCAG
GTCGTTGCGCTCTGTGGACGTCTACCGTTGGTGCTCGCGATCGCGGGTTC
CATGCCCGTCGTGAAAGGAAGGGCTTGACCGCCGGCGCATGGGGAAAGCT
GATCGAATTAGAGGATGTTGCTACGAAGATGGAGGCTTCCGACGAGGACT
CGGATAGTCTTAATGTCGTCCTCGAGACCAGCTTCAATGCCTTGACGTTA
ACGAAGAAGAGGGAGTTTAAGAAGTCGGCTGTGTTGGCGCCGGGTGCCGT
TGTGTCGACCGAGATGCTGCTAAACCTGTGGGAGACAAAGGTGCGTTGTG
GGTTCCCTTGTGCCATGTGGTTGAACGTCTGGAACTCGTGTTTTGTGAGT
TGCTTTAAAGATTGCACGTGCGCTTTTTTCACACGCTGTCTCGTCTGTGC
TGCGTATTGACCTCGGTGCATACCTTCCCCGGTGTTCAATGTGCAGGACA
CGGGGGGTACGCGAGAGGAAGCTGAGGGTCTGGTAAGCAAGTGCCTACCT
GCACGATGTGGGTGGTGGTGGGTACCGTGTTCATGACCTCGTCCTGGACT
TTGTGAAA
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Coding sequence (CDS) from alignment at Scaffold_344:290438..292295-

>EsuBft2112_4a-0001 ID=EsuBft2112_4a-0001|Name=EsuBft2112_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1299bp|location=Sequence derived from alignment at Scaffold_344:290438..292295- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGTTGGAGGCTTGCCCCAGCCCCGTCCAGGAGGCTCTGCCATG
GATGGCGACATCTGCAGTTGGGGTCCTCGACATTGCGAGCGTTGGGCCAT
TAGAGCCTGTGTGTCAGGCATTCAAGGCGCTGATCGAGGCCGCCGAAGGT
GCAGTCGAATCCCAGGAGAAGCTACAGAGCTTGGTGTCCCGGTGCAGATT
CCTCACAACCGTCTTGATTCGACACCGTCGAGCGGTTGATCCCCTCGCTC
AGGTGCAGACGCCCATCGGGGACTTCGTCGTCACGACCAACAAGCTGGCA
GCATTCGCAGAAAGTGGTCCAGGGGTGGCAAGTGCAGGGCGTTTTTTTTG
CCATCGCACCGACCTGAGCACCCTCACCGACTTTGAGGAGGGTCTCCGCA
GGATCGGCGCCGACATCAACTCGGAAGACGGGCTGGAGTATCACCAGCAG
TCAATCGGACTGGGTCGCGCGTTGCTCCCACCAAGCTTGCCGGACATGGC
CGCAGTCCCCGCAGGAGCGCTTGCGTTGCCCCACAGCTACGTGGAGCGCG
CCGCGGTACAAGAAGTTGCTGACGGCCTCACCAACCCGGAGGAGCCGCGT
GCCCCCTACTCTGCTGTCGGGATGGGTGGAGGGGGGAAGAGCGTGCTTGC
CTCTGCTGTCGTGCGCAAGTCGAGCGTGACTCAACACTTCCGTGGGGGGA
GATGGGCGCTGGGGCATCCACGGGCCTCCCCACGCCTCGTGGTGCTGGAT
GACGTGTGGGAGCCCGAGGTTGTGGACGCGCTTCTTCCTCTGGGATTGAA
GGTGCTTGTGACCACGATTGATCGGTCGGTTCTTGGCGTGTCGTCGGGAT
GCGTGGAGGTGGGAGACATGACGGAGGGAGAGGCGCTGGAGCTGCTGCGG
AAGACGAGTAGGACTGTGGGTCGTTGCGCTCTGTGGACGTCTACCGTTGG
TGCTCGCGATCGCGGGTTCCATGCCCGTCGTGAAAGGAAGGGCTTGACCG
CCGGCGCATGGGGAAAGCTGATCGAATTAGAGGATGTTGCTACGAAGATG
GAGGCTTCCGACGAGGACTCGGATAGTCTTAATGTCGTCCTCGAGACCAG
CTTCAATGCCTTGACGTTAACGAAGAAGAGGGAGTTTAAGAAGTCGGCTG
TGTTGGCGCCGGGTGCCGTTGTGTCGACCGAGATGCTGCTAAACCTGTGG
GAGACAAAGGACACGGGGGGTACGCGAGAGGAAGCTGAGGGTCTGGTAAG
CAAGTGCCTACCTGCACGATGTGGGTGGTGGTGGGTACCGTGTTCATGA
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