EsuBft2112_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2112_3a-0001
Unique Name	EsuBft2112_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_344	contig	Scaffold_344:292327..295724 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2112_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	219
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a	EsuBft2112_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_344 292327..295724 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a-0001	EsuBft2112_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_344 295313..295634 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a-0001-exon	agat-exon-83795	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 292327..292368 -
EsuBft2112_3a-0001-exon	EsuBft2112_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 292923..293737 -
EsuBft2112_3a-0001-exon	agat-exon-83796	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 293920..294342 -
EsuBft2112_3a-0001-exon	agat-exon-83794	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 294646..295420 -
EsuBft2112_3a-0001-exon	agat-exon-83793	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 295590..295724 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a-0001-exon	agat-three_prime_utr-8265	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 292327..292368 -
EsuBft2112_3a-0001-exon	agat-three_prime_utr-8266	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 292923..293737 -
EsuBft2112_3a-0001-exon	agat-three_prime_utr-8267	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 293920..294342 -
EsuBft2112_3a-0001-exon	agat-three_prime_utr-8268	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 294646..295312 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a-0001-cds	EsuBft2112_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_344 295313..295420 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2112_3a-0001-exon	agat-five_prime_utr-5358	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_344 295635..295724 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:292327..295724-
coding sequence from alignment at Scaffold_344:292327..295724-

spliced messenger RNA

>EsuBft2112_3a-0001 ID=EsuBft2112_3a-0001|Name=EsuBft2112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2190bp|location=Sequence derived from alignment at Scaffold_344:292327..295724- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGTGGCATGAGACCTTGCTGTCAACTGCGCCTGAACGCCAGCAACAT
ATACTGCAGCGGGGAAGCACGGGCGGCTGGCTATTTTTTTATGGGGCTTA
CGGCCGGCCTGCGTGTGGAGGTTTGGACGGGTTTGGTGTACAAGAGCCCG
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGCCTGACCCCATCAGTGCCGACCCAACTACACCACC
ACGCGCATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCA
TCCCTTGAGGGTATTAATTACATCGTGTGCAAATTGAACTGTCAGTACCG
TAAATGATTGTAGAGACGACACTTAATACAGAATCCAGATTCATGAGCTT
GGCAATCAACGACACCCCTCTCCGCGAACAAACACTGCTGTGCAACAAAT
AAGCGCAAAAAAAAAGTTTTTCGACTTTTTTCTTGGAACAGAAAAAAAGC
GGGAGAGGTCCCGTTCACCCCCACCAGTATCAAGCACTGTGCAGAAAATA
AGCGCAAAATAAACGCGTTTTCGACAGTTTTCATGAACAGAGATCCTGTA
TCAGCCACACCAGAGACCACACATCCATCGGCGAGGAAGGAGGTGTGTGA
AGCCGTGGACAGAGAGCGTATTTTACACAAACATCCCTGTCTGTTTTAAG
AGCTGAATGCATTTTTTGATAAAATGCCCCAGGGGAAACCCTCCGCGGAA
CGTTTGTTGCAGTCTTCCAGAACTCTAGTTGGTCGCGCAGCTGCCATTTA
GCACGTGGCGCGCAGCCAACGAAATTTCGCAACAGGGCGCATGCTGCAAC
CCCAGAGAATTTTCGCGCGTGGCGTGACAAGCTCGTTTGGACGCCTTCCC
ACCTTTATTTTATTTTCCGCCGAAGTCGTGTTGCGTTCTTTATTTTTTAT
TTGCATTTTTGCTGCCCAAGTGCTTTGCGATGTGGTTAATTAAAGTAGCA
CTACGTTTGCAGCACATGCTTTATACTCTTGTGCTGAGTTGGCGAAGAAG
TTGGAAGCACTTTGTAGCATCGTTCAAGCTAGATGGTCTGCGGCATAATT
TTGATGCTGCACAACACAAAAGCAGCTGCGGACGCAACAAGTTGTCCGCG
AGTTATGCGCAGAGGGTGCCATCCCGCTGGCAAACCAATGATCTTTTCAG
AACTTCAGTTGCTATACACACTGGTGCAGCAGCATGTGACTACCGTGGCG
CAACAGTTTCGAGCAGCGGGCATAGAGTCTTCGTGACGAACCTAGTTATT
TTTCTCGTCATGATGTACCCAAACGTATGCGCGGGCAGACATGTCGTGAC
GTTGTCCCCTAATTACATATGATTTTTGTCACCTTTCTTATATTCGTTCG
CGTGTGGTGCCACTCTGCCGCGTGTTTTCGTTAAGTCTCAGCAAGAGGTC
TGCGTCCGGGAGGATAAGCGGCGGCGGGAATGCAACGCGCTCCCGCCAAT
GGAGGCCAAGTGGGCCTGGCAGCCGCCGTGGACCCCACCACAGCCGAGCG
TCTTGAGCATGTTGGTAGGTTGCTCGCCAAAAGAAGCCTT

protein sequence of EsuBft2112_3a-0001

>EsuBft2112_3 ID=EsuBft2112_3|Name=EsuBft2112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MGLTAGLRVEVWTGLVYKSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
X

mRNA from alignment at Scaffold_344:292327..295724-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2112_3a-0001 ID=EsuBft2112_3a-0001|Name=EsuBft2112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3398bp|location=Sequence derived from alignment at Scaffold_344:292327..295724- (Ectocarpus subulatus male Bft15b)
GAGAGTGGCATGAGACCTTGCTGTCAACTGCGCCTGAACGCCAGCAACAT
ATACTGCAGCGGGGAAGCACGGGCGGCTGGCTATTTTTTTATGGGGCTTA
CGGCCGGCCTGCGTGTGGAGGTTTGGACGGGTTTGGTGTACATGCGCGTC
TGACGACTAATTGTTTGTTGTTGTTGTTGACTTCACATTAAACCGTATGC
CAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCGGCCCGTGGTCACGA
AAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGCACACGTAGCAAGAA
AAAGGTGTACAAGAGCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGACCCCATCAGTG
CCGACCCAACTACACCACCACGCGCATGCCTCGCGGCGGATATGCGCAGC
AGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTAGCCCTGCTCGCC
AGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGCAAAAGCTTGTCG
AGGAGCGAGGGGAAGAAGGGAGACTAAGAGGGCGCTGAATATATTGTTGG
CTTGACACATTTTTTGGGGCATCTTTCGGTGTTTTTCAAGGTTGTAATAC
AAGGGTGTCGCTGTTTTTTTGTGGTGCTTTAACACATGAATTAGGGCCTC
GCTCGGGGTTTTTAATGGGGTTTTAATACGGAAGAGTACGGACAGCCTGA
TACTGGAAGAAGAGCAGCGGGGTACTTGGCAGGTATTAATTACATCGTGT
GCAAATTGAACTGTCAGTACCGTAAATGATTGTAGAGACGACACTTAATA
CAGAATCCAGATTCATGAGCTTGGCAATCAACGACACCCCTCTCCGCGAA
CAAACACTGCTGTGCAACAAATAAGCGCAAAAAAAAAGTTTTTCGACTTT
TTTCTTGGAACAGAAAAAAAGCGGGAGAGGTCCCGTTCACCCCCACCAGT
ATCAAGCACTGTGCAGAAAATAAGCGCAAAATAAACGCGTTTTCGACAGT
TTTCATGAACAGAGATCCTGTATCAGCCACACCAGAGACCACACATCCAT
CGGCGAGGAAGGAGGTGTGTGAAGCCGTGGACAGAGAGCGTATTTTACAC
AAACATCCCTGTCTGTTTTAAGAGCTGAATGCATTTTTTGATAAAATGCC
CCAGGGTACGTGCCCCCACCCGAATATATGTACGGGGCCACCGACCCACA
ATGGCACACATGGCAGGCAATCAACAGCAGTAGCTAGTGTGCGCATTGTA
CTCAAGAACGACGGGTTCCAGCTCCACCGCGCGTCCACCGTGCCTGCAAA
TCGAACGTGCTATCAAGTGAGGGGGTAGAAAGTGCAGGGAAACCCTCCGC
GGAACGTTTGTTGCAGTCTTCCAGAACTCTAGTTGGTCGCGCAGCTGCCA
TTTAGCACGTGGCGCGCAGCCAACGAAATTTCGCAACAGGGCGCATGCTG
CAACCCCAGAGAATTTTCGCGCGTGGCGTGACAAGCTCGTTTGGACGCCT
TCCCACCTTTATTTTATTTTCCGCCGAAGTCGTGTTGCGTTCTTTATTTT
TTATTTGCATTTTTGCTGCCCAAGTGCTTTGCGATGTGGTTAATTAAAGT
AGCACTACGTTTGCAGCACATGCTTTATACTCTTGTGCTGAGTTGGCGAA
GAAGTTGGAAGCACTTTGTAGCATCGTTCAAGCTAGATGGTCTGCGGCAT
AATTTTGATGCTGCACAACACAAAAGCAGCTGCGGACGCAACAAGTTGTC
CGCGAGTTATGCGCAGAGGGTGCCATCCCGCTGGCAAACCAATGATCTTT
TCAGAACTTCAGTTGCTATACACACTGGTGCAGCAGCATGTGACTACCGT
GGCGCAACAGTTTCGAGCAGCGGGCATAGAGTCTTCGTGACGAACCTAGT
TATTTTTCTCGTCATGATGTACCCAAACGTATGCGCGGGCAGACATGTCG
TGACGTTGTCCCCTAATTACATATGATTTTTGTCACCTTTCTTATATTCG
TTCGCGTGTGGTGCCACTCTGCCGCGTGTTTTCGTTAAGTCTCAGCAAGA
GGTCTGCGTCCGGGAGGATAAGCGGCGGCGGGAATGCAACGCGCTCCCGC
CAATGGAGGCCAAGTGGGCCTGGCAGCCGCCGTGGACCCCACCACAGCCG
AGGTACGTATTATTTTCACACGAAAGACTTCGCGTTTAGAGGTTTGATGA
CTATTTTTGTAGTCCAAAGTACCGGTGGGGTCCTACCCTTCTGTGCGACC
ACGGATCAGAGCTCTGGCAAGATGCCCCTGCGAGCGATGGTTAAATGTGA
TACCTCCGTCGCCCCGGTGGTTCAGTTGGTGACCCCGCAGCCTCTGAAGT
TTGGGCCGTGAGTTCGAACACTTACCCTGGGTATGTTTTCTCACATCATG
CCCGAACAAGTGGAGAACGCTTTATTCGTAGGTAAAAAAAATCCGACTTC
ACGGTCGGCGAGGGAAGTGATGGCTGAGCCCTTCTCGCGATAAAAAATGA
AGGCAAGAACCGCAGAGAGAAGGTGGAGATTGTGTGATGTGTGACCTTCC
TCTTGTGTGACCCAGGCTGATACGTCAAACGTATGCACCGAAAGGTGTGT
AGACTGACGCCAGAATAGAAGGGAGTAACAACACACACACGCACAACTCA
ATCCTCGAACTCAATTCTGAGTTCCATCCCTCCCTCCCTCCCTCTCCCGT
GCACAGCGTCTTGAGCATGTTGGTAGGTTGCTCGCCAAAAGAAGCCTT

Coding sequence (CDS) from alignment at Scaffold_344:292327..295724-

>EsuBft2112_3a-0001 ID=EsuBft2112_3a-0001|Name=EsuBft2112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_344:292327..295724- (Ectocarpus subulatus male Bft15b)
ATGGGGCTTACGGCCGGCCTGCGTGTGGAGGTTTGGACGGGTTTGGTGTA
CAAGAGCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN