EsuBft2112_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2112_2a-0001
Unique NameEsuBft2112_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:297635..300956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog8081.XP_008403127.1
ProteomeIdEsuBft2112_2
Protein domainsIPR029526
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33208|Metazoa
Length197
Hectar predicted targeting categoryother localisation
Evalue2.85e-14
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria,48G9Q@7711|Chordata,49KX8@7742|Vertebrata,4A9HZ@7898|Actinopterygii
Date last modified2016-06-15
Date creation2016-06-15
DescriptionTransposase IS4
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2aEsuBft2112_2aEctocarpus subulatus male Bft15bgeneScaffold_344 297635..300956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2a-0001EsuBft2112_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 297667..299916 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2a-0001-exonagat-exon-83792Ectocarpus subulatus male Bft15bexonScaffold_344 297635..297848 +
EsuBft2112_2a-0001-exonEsuBft2112_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 298211..298350 +
EsuBft2112_2a-0001-exonagat-exon-83790Ectocarpus subulatus male Bft15bexonScaffold_344 299118..299604 +
EsuBft2112_2a-0001-exonagat-exon-83791Ectocarpus subulatus male Bft15bexonScaffold_344 299826..300956 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2a-0001-exonagat-five_prime_utr-5357Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 297635..297666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2a-0001-cdsEsuBft2112_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 297667..297848 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_2a-0001-exonagat-three_prime_utr-8264Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 299917..300956 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1972bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCTAGGCGTCACGCGCGCACCGCACAATGGATGCGAAAGCACTGGAGC
GAGTCGGCCCACGACAACTACCCCATGGTGCAGGAGTGCATGCAGCGCGA
TTTGTTCGAGCTGCTGTACTCTCGGTTCCTCCCCTGCTCGGACCCCAACG
CCCCTCCACGGCAACTACCGACCGGAGAGGACAACCCGGAGTACGACTTG
AAGTGGCATATCAGGGACCTGGAGAAGATCCTAAACCGCGCGTGGTACGT
TGACTTGGGTCAGTGGATGTGCTACGACGAACAAATGGTGAAGACAGTAA
GCACGTTTTCGAAAGGACTCGCTCATTTCAACCCGGCGAAACCCATCACA
CACGGGATGAAGCAATATGCCGCGTCCGACAGGAACGGATACTGCTTGAT
CAACAGCATCGACGGGAGCTTCAAAGGTGATCCCTCCCTTGGACCCTTGG
AGGATTGCCCCCTCGGCAAAACCACGCGACACGTGCTTCACGTCCTGCTG
GAGGAGTGCGAGACGCTGCGAGGGAAGCTTGTCGGTTCCGGCGTCTTCAT
CGCAATGGCCAACTACTTCACCTCGCCCACCCTGTTCGCCTGCCTCGCGT
CACACGACATCTTCGCCGTGGCTACCTGTCGCAGCCCGCGGACGTGCGGC
GCTCTCCCGTACATGGAGAGCCTCGGGCATACGATTCCCAACCGGGGCGA
CATGACCTTCTGCCGCTCGGGTGAGATGGCGTTCGTGCAATGGAGAGACT
CGAAGGAGATTCTCCTTTACAGCACGGTCCACATCGGGGAGACGGGGGGA
GAAGGGGGCGGCATCAACCACTTCAAGCCTGTACTTCTAGCTCTGAAAGG
CAAAGGTCGGGCGGGGAAGCATAAGGAGCACGATCAGCCGGTGATGCGCA
TGGACTACGTGAAGTACATGGGGGGGGGTTGATAGGGCAGACCAGCATAA
CGAGTCGCACTACCACGACCATAAGTCCTCCACGAATCACTGGCGGTGCG
TTTTCGACGCGAAGATCATGCAGATGCTGACCAACAACTTTCTGTTGTTT
CGGATGTGGGTGCGGCTTTTGATGAGCGAGGTAGACATCTTGATGGACCC
ACACAACACCCCCTTTGAGGAGTTTCAAGAGTTGAAGGATGTAAAGAAGG
AGTTGGAGAGGCTGAGCAAGAGGGAGAGGGCTGATTGGGACGAAGAATTG
TCTGAGATTTTGATGAAGATATGCAACATGGGAACCATCAGGAAGGGCGG
GAAAGCCCCTCGGTCGTCGGAGAGACAACAGCCTACGGGGAAGGTTTGGG
GTAGCGTCCAGTTTAAGTCACAGCGGTTGTGCATGAACCCTGCATGCCCA
AAGCGAACGCTCAAAGGGTGCACATGCGAGGAGTTTTGCACTTTCGAGGG
TCAGACAGGAGTATTGATGTGCAAGACGTGCTTCCTCGACACGGACCGCC
ACGCGGCCGCCGCCGAAGCCCACTGGCATGGGGTCGATGTACTGCCGAGG
AGGTCACAGATGGAATGGGAGGGGGTTTCTTAGGCTGGGTTGGGCTCGGC
AAAGGGAGTATTGGGTGATCGTATGTCGCTTTGCGTGGGTGTCGCCTACA
AAGCCCCAGGACCACTTTTTTTTTGGGGGGGGGGGAGATAGGGACATGTG
GCAGGTGCACCCTGCTGTGCTTTTTTTTCTTTATTGTTTTTCCGGTTAGC
CCGCCGGTGCTTGTTGCGTTGGAGGAACGACGTTGTTCAGTGACGAGTTT
CTCTGTAGGGACAGTTTTGGACATACCGACTTGTGTCACCGGCATTGTTT
GGAGACGGGACCTCCCCGCCCCCGGTTAAAACCTTCGGCGCCATCATCAG
CAAACCCCGGCTAACAAACGTTCAGACCAAACACCATTTTTTTCATGGCT
TGGTTCATGCTCCAACGACGGTTCTTTGTGGATTTTATAACGCTCCAAGT
GTGAAACATCTGCAACTAGTCC
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protein sequence of EsuBft2112_2a-0001

>EsuBft2112_2 ID=EsuBft2112_2|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MRKHWSESAHDNYPMVQECMQRDLFELLYSRFLPCSDPNAPPRQLPTGED
NPEYDLKWHIRDLEKILNRAWYVDLGQWMCYDEQMVKTVSTFSKGLAHFN
PAKPITHGMKQYAASDRNGYCLINSIDGSFKGDPSLGPLEDCPLGKTTRH
VLHVLLEECETLRGKLVGSGVFIAMANYFTSPTLFACLASHDIFAVATCR
SPRTCGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVH
IGETGGEGGGINHFKPVLLALKGKGRAGKHKEHDQPVMRMDYVKYMGGG
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mRNA from alignment at Scaffold_344:297635..300956+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3322bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)
GTGCTAGGCGTCACGCGCGCACCGCACAATGGATGCGAAAGCACTGGAGC
GAGTCGGCCCACGACAACTACCCCATGGTGCAGGAGTGCATGCAGCGCGA
TTTGTTCGAGCTGCTGTACTCTCGGTTCCTCCCCTGCTCGGACCCCAACG
CCCCTCCACGGCAACTACCGACCGGAGAGGACAACCCGGAGTACGACTTG
AAGTGGCATATCAGGTGAATCTATGCTTAGACTTGTCCGGATGCATTTGT
CCGATGTAGATAAGCTTGCCGTGCGTTTTTTTTTTTTTTCAAGCATGTTT
TTTTGCTGTAGTGGGGGCAACGACATCGTACGCTGGATCACCCCCTCCAC
ACGCCCGTTCTGTTTCTCCTTTTAGCAGTGTTTTCCTTTTTTTTGTCGAG
TAGCCGGGCGAACGGCATGCGTGCAGGATATTCTCCCATACAATCATCAC
AGCATGTTGGTGCTTGCATTTCATGCTCGCAAGTTCGAGATATAGGCTGG
ATGCGCGAATACGAAAAAGCGAACCGTCGGAAAACTTGTCGTTTACAATT
TTTTGTCGTCCTTGCTGCTAACGCAGGGACCTGGAGAAGATCCTAAACCG
CGCGTGGTACGTTGACTTGGGTCAGTGGATGTGCTACGACGAACAAATGG
TGAAGACAGTAAGCACGTTTTCGAAAGGACTCGCTCATTTCAACCCGGCG
AAACCCATCACACACGGTGAGAAAAACCCGTTTTGTTCAACTACGCCCCC
TGTGACCCCACAGCCACCCCCTGCAGACATGCATGAGATCCTGTTTTTTC
GTGGAATTAGCCCTGGTCAAAACCAACACCATGTTTTGTTGACGGAGGCG
TACCCCGCCTATCCGTCTGCACCCGATCTTTAGTGCAGATCGGGAGGTGT
CGAGGCCAGTTTTTTCATCGTACGTGTTCGGTGCTGTCAAGACGTAAGAC
GTGCAAGGTCGTCGACGAGCTCAGCCCCTGGCGTTTCGAAAGTCTGTCCG
CGATCTGCCGCATGTGTTATGCGTTCTGCTGTAGAACCTTTTGTGCGTTA
GTGATACTGTACACACGTACGCCGGGCGGAAGCTTCGTATGACGCCTTCG
TGCACAAGCCTCCAACTGGAATAACACCCCTCACTTTCTATGCTTCGTGT
TTTTCGGCTCTCGTTTGTTTGTNATCGGGAGGTGTCGAGGCCAGTTTTTT
CATCGTACGTGTTCGGTGCTGTCAAGACGTAAGACGTGCAAGGTCGTCGA
CGAGCTCAGCCCCTGGCGTTTCGAAAGTCTGTCCGCGATCTGCCGCATGT
GTTATGCGTTCTGCTGTAGAACCTTTTGTGCGTTAGTGATACTGTACACA
CGTACGCCGGGCGGAAGCTTCGTATGACGCCTTCGTGCACAAGCCTCCAA
CTGGAATAACACCCCTCACTTTCTATGCTTCGTGTTTTTCGGCTCTCGTT
TGTTTGTCCTTTTTTTGTTCCTTCGCGAGACAGGGATGAAGCAATATGCC
GCGTCCGACAGGAACGGATACTGCTTGATCAACAGCATCGACGGGAGCTT
CAAAGGTGATCCCTCCCTTGGACCCTTGGAGGATTGCCCCCTCGGCAAAA
CCACGCGACACGTGCTTCACGTCCTGCTGGAGGAGTGCGAGACGCTGCGA
GGGAAGCTTGTCGGTTCCGGCGTCTTCATCGCAATGGCCAACTACTTCAC
CTCGCCCACCCTGTTCGCCTGCCTCGCGTCACACGACATCTTCGCCGTGG
CTACCTGTCGCAGCCCGCGGACGTGCGGCGCTCTCCCGTACATGGAGAGC
CTCGGGCATACGATTCCCAACCGGGGCGACATGACCTTCTGCCGCTCGGG
TGAGATGGCGTTCGTGCAATGGAGAGACTCGAAGGAGATTCTCCTTTACA
GCACGGTCCACATCGGGGAGACGGGGGGAGAAGGGGGCGGCATCAACCAC
TTCAAGCCTGTACTTCTAGCGTGAGTTTCGGTTTTCTTTTGACCTTCGCG
TGGGTGTGAAGTGTGTGCATTGCCATTTGTTCGCGTCGAGAATGGGGAGG
GTTGGGATTGGCGTGCGACCGAGTTGAATTTTACTCCGAATCGGTCGTGA
AAGGTAGAACACGTCTTTGACAGGGCACACGGCGNGTCCCTTGCCCCCCC
CCCCGCCCTATTTCATTTCTTTTTGTTTCCGTCTTCTCAAGTCTGAAAGG
CAAAGGTCGGGCGGGGAAGCATAAGGAGCACGATCAGCCGGTGATGCGCA
TGGACTACGTGAAGTACATGGGGGGGGGTTGATAGGGCAGACCAGCATAA
CGAGTCGCACTACCACGACCATAAGTCCTCCACGAATCACTGGCGGTGCG
TTTTCGACGCGAAGATCATGCAGATGCTGACCAACAACTTTCTGTTGTTT
CGGATGTGGGTGCGGCTTTTGATGAGCGAGGTAGACATCTTGATGGACCC
ACACAACACCCCCTTTGAGGAGTTTCAAGAGTTGAAGGATGTAAAGAAGG
AGTTGGAGAGGCTGAGCAAGAGGGAGAGGGCTGATTGGGACGAAGAATTG
TCTGAGATTTTGATGAAGATATGCAACATGGGAACCATCAGGAAGGGCGG
GAAAGCCCCTCGGTCGTCGGAGAGACAACAGCCTACGGGGAAGGTTTGGG
GTAGCGTCCAGTTTAAGTCACAGCGGTTGTGCATGAACCCTGCATGCCCA
AAGCGAACGCTCAAAGGGTGCACATGCGAGGAGTTTTGCACTTTCGAGGG
TCAGACAGGAGTATTGATGTGCAAGACGTGCTTCCTCGACACGGACCGCC
ACGCGGCCGCCGCCGAAGCCCACTGGCATGGGGTCGATGTACTGCCGAGG
AGGTCACAGATGGAATGGGAGGGGGTTTCTTAGGCTGGGTTGGGCTCGGC
AAAGGGAGTATTGGGTGATCGTATGTCGCTTTGCGTGGGTGTCGCCTACA
AAGCCCCAGGACCACTTTTTTTTTGGGGGGGGGGGAGATAGGGACATGTG
GCAGGTGCACCCTGCTGTGCTTTTTTTTCTTTATTGTTTTTCCGGTTAGC
CCGCCGGTGCTTGTTGCGTTGGAGGAACGACGTTGTTCAGTGACGAGTTT
CTCTGTAGGGACAGTTTTGGACATACCGACTTGTGTCACCGGCATTGTTT
GGAGACGGGACCTCCCCGCCCCCGGTTAAAACCTTCGGCGCCATCATCAG
CAAACCCCGGCTAACAAACGTTCAGACCAAACACCATTTTTTTCATGGCT
TGGTTCATGCTCCAACGACGGTTCTTTGTGGATTTTATAACGCTCCAAGT
GTGAAACATCTGCAACTAGTCC
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Coding sequence (CDS) from alignment at Scaffold_344:297635..300956+

>EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)
ATGCGAAAGCACTGGAGCGAGTCGGCCCACGACAACTACCCCATGGTGCA
GGAGTGCATGCAGCGCGATTTGTTCGAGCTGCTGTACTCTCGGTTCCTCC
CCTGCTCGGACCCCAACGCCCCTCCACGGCAACTACCGACCGGAGAGGAC
AACCCGGAGTACGACTTGAAGTGGCATATCAGGGACCTGGAGAAGATCCT
AAACCGCGCGTGGTACGTTGACTTGGGTCAGTGGATGTGCTACGACGAAC
AAATGGTGAAGACAGTAAGCACGTTTTCGAAAGGACTCGCTCATTTCAAC
CCGGCGAAACCCATCACACACGGGATGAAGCAATATGCCGCGTCCGACAG
GAACGGATACTGCTTGATCAACAGCATCGACGGGAGCTTCAAAGGTGATC
CCTCCCTTGGACCCTTGGAGGATTGCCCCCTCGGCAAAACCACGCGACAC
GTGCTTCACGTCCTGCTGGAGGAGTGCGAGACGCTGCGAGGGAAGCTTGT
CGGTTCCGGCGTCTTCATCGCAATGGCCAACTACTTCACCTCGCCCACCC
TGTTCGCCTGCCTCGCGTCACACGACATCTTCGCCGTGGCTACCTGTCGC
AGCCCGCGGACGTGCGGCGCTCTCCCGTACATGGAGAGCCTCGGGCATAC
GATTCCCAACCGGGGCGACATGACCTTCTGCCGCTCGGGTGAGATGGCGT
TCGTGCAATGGAGAGACTCGAAGGAGATTCTCCTTTACAGCACGGTCCAC
ATCGGGGAGACGGGGGGAGAAGGGGGCGGCATCAACCACTTCAAGCCTGT
ACTTCTAGCTCTGAAAGGCAAAGGTCGGGCGGGGAAGCATAAGGAGCACG
ATCAGCCGGTGATGCGCATGGACTACGTGAAGTACATGGGGGGGGGTTGA
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