EsuBft2095_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2095_4a-0001
Unique NameEsuBft2095_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_614contigScaffold_614:186100..187945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2095_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length108
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2095_4aEsuBft2095_4aEctocarpus subulatus male Bft15bgeneScaffold_614 186100..187945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2095_4a-0001-exonEsuBft2095_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_614 186100..186113 +
EsuBft2095_4a-0001-exonagat-exon-60908Ectocarpus subulatus male Bft15bexonScaffold_614 186876..187945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2095_4a-0001-cdsEsuBft2095_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_614 186100..186113 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2095_4a-0001-exonagat-three_prime_utr-8159Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_614 187390..187945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2095_4a-0001EsuBft2095_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_614 186100..187389 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2095_4a-0001 ID=EsuBft2095_4a-0001|Name=EsuBft2095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1084bp|location=Sequence derived from alignment at Scaffold_614:186100..187945+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGACTTCATGCTCGACTGCACGAGGGCGCTTATTGACAGCGGGTA
CACCCTGGCTTCCTTCAGGGGGATCCACAGCAACCCCGACTATCCCGTCG
TACTCCCCATCTGGTCAGAGCTTTCGAAGGGCGACCTCCTTCCCCCGCGC
CAGGTGACCGGGCAAGCTGGTGCTCCCAAGAAGGGCGCCCGGCAGCGTGC
GCGATTCCCTGGTCTCAACGACAACTGCCAGCGTGGAGGCGGCCCGGTAG
CCCGAGACGCAGGTGTGCGTGGCGGCGGGGGCAGCGCTGAGCGTGGCGGG
GGCGGCAACGCCCAGCCGCTCCCGGTACATGGCATGGGCAGTGTTCGCAG
CCACGTGGGAGACCTCAACATCGGAGGTTCCGCGGGCGAGCGACCCCCCT
CTAGGGTGTGTGGGGGGCTTGCTGTTGAGCGTTACAGCTCGCAAGACGCT
CCCCGCCGCGATAATGCAGCGGGGGCCGGGTCAAGTGCCGTGCTGAGCCA
ACCCCAAGGCTCTATCGACATGTCGTAGTTCAAGCAAGCTGTTTTGCTCA
TCCTTTTGGATTTCTTCGTCGCACGGTGTCGGAGTGACACTCGAGGCTGT
TGTTCGTGTCTATGGCAGCAAGGTGCTTCAAGTCGCATGTGTTTACAGCT
TTGCGTAGAGCACCCGCCACGGGCGGGACACGTTGTCGGAGTGACGTGCG
AGGCTGTGGTCCGCGTGTATGATAGGGTGCAAGACGTCGCATGCATGTGT
CTGCAGCTTTGCGTAGAGCACCCGCGACGGACGGTGCGCTTTTTGTTGCG
TATATTTTTCGCTTGACCGTCACCAAAAGCGACATTTGACAACCTCGCAC
ATAATTGGGAGGGATAGGTGGAGTTGACGTCAAGAATGGGCAGAGCCGTC
GAGCTCCAAGGGGAACCAGTTGTCAAGGACGGTCGGCGTGAACCACTGCA
TGATTGTTCCGTAGACTGCTGCGTGTATGGAGCGCTTGTGACGATAACCG
CGACAAGCAAGAGCGTGTGCCCTTCACCCCCCACCGAACGATTCCCACCC
GAGCATTCACCCCGAAAAACTTCATGAAATCCCT
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protein sequence of EsuBft2095_4a-0001

>EsuBft2095_4 ID=EsuBft2095_4|Name=EsuBft2095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MCDFMLDCTRALIDSGYTLASFRGIHSNPDYPVVLPIWSELSKGDLLPPR
QVTGQAGAPKKGARQRARFPGLNDNCQRGGGPVARDAGVRGGGGSAERGG
GGNAQPLPVHGMGSVRSHVGDLNIGGSAGERPPSRVCGGLAVERYSSQDA
PRRDNAAGAGSSAVLSQPQGSIDMS
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mRNA from alignment at Scaffold_614:186100..187945+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2095_4a-0001 ID=EsuBft2095_4a-0001|Name=EsuBft2095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1846bp|location=Sequence derived from alignment at Scaffold_614:186100..187945+ (Ectocarpus subulatus male Bft15b)
ATGTGCGACTTCATGTAATGTAGTTCGGTTTTGTACATCGGTTTGTCATC
CTCGAATCTCATCCCTGGTGTTCCCTCTGGTCAGAGCTCGAAGTTGTTTC
TTCTTTTGCCTACATAAGGTCCGGGATCTATGTTGACTATGAACGGGGTT
CTCGTAGAACGAAGTGGGATCCCCTCTGGCTGTGCATGCTGTACTTGTGC
CCGAAGCTTTGTATCATCTTCGTGTGTCATCTTTGTATTTCATCGCCACG
TGTGAGTTGGCACACCCGGAGGGAGCTAGCACCACCACCCCCTCTCGATG
GACCGCCATGAACGTAGCCAGATCTTTTTGTAATGGTTGATATTTGTTTA
GGGTCCTTTTGCTAGAAGTGCGGGATTACGTGATGCTTTGCCGAACACAC
TTTGCCACCTCCGATGTTAATTAAGGGCTCACCTTGAGGGTAAGAGTTTC
ACAACAAAAACGAACAGGCATGAAAGCAGGGGCCTGAAAACAACCCTGCC
CTTCACCCAACCCAGCGAACGTTTCCTGCTTTGATCGCAGTTCGTTTTGA
CTCGTCCTCGTGTTGCAGGTTCAATCACTTTTGTTGTGCCCACCGCTTCT
TTTGAGCAAATCTCTACTCCTTCGGGGTTTGGTGCGTCGAAGATCAGCTG
GGTTAAACCTGAGGTTCCAGGCCGTCTTTTGTTTCGCTGATTCCACATTG
TTGTACTTGACGCATTTGACTGACCATTTTTTACGACTCTTCGCCCTCGT
CCCGATCCCGTGACAGCAATCGACAGGCTCGACTGCACGAGGGCGCTTAT
TGACAGCGGGTACACCCTGGCTTCCTTCAGGGGGATCCACAGCAACCCCG
ACTATCCCGTCGTACTCCCCATCTGGTCAGAGCTTTCGAAGGGCGACCTC
CTTCCCCCGCGCCAGGTGACCGGGCAAGCTGGTGCTCCCAAGAAGGGCGC
CCGGCAGCGTGCGCGATTCCCTGGTCTCAACGACAACTGCCAGCGTGGAG
GCGGCCCGGTAGCCCGAGACGCAGGTGTGCGTGGCGGCGGGGGCAGCGCT
GAGCGTGGCGGGGGCGGCAACGCCCAGCCGCTCCCGGTACATGGCATGGG
CAGTGTTCGCAGCCACGTGGGAGACCTCAACATCGGAGGTTCCGCGGGCG
AGCGACCCCCCTCTAGGGTGTGTGGGGGGCTTGCTGTTGAGCGTTACAGC
TCGCAAGACGCTCCCCGCCGCGATAATGCAGCGGGGGCCGGGTCAAGTGC
CGTGCTGAGCCAACCCCAAGGCTCTATCGACATGTCGTAGTTCAAGCAAG
CTGTTTTGCTCATCCTTTTGGATTTCTTCGTCGCACGGTGTCGGAGTGAC
ACTCGAGGCTGTTGTTCGTGTCTATGGCAGCAAGGTGCTTCAAGTCGCAT
GTGTTTACAGCTTTGCGTAGAGCACCCGCCACGGGCGGGACACGTTGTCG
GAGTGACGTGCGAGGCTGTGGTCCGCGTGTATGATAGGGTGCAAGACGTC
GCATGCATGTGTCTGCAGCTTTGCGTAGAGCACCCGCGACGGACGGTGCG
CTTTTTGTTGCGTATATTTTTCGCTTGACCGTCACCAAAAGCGACATTTG
ACAACCTCGCACATAATTGGGAGGGATAGGTGGAGTTGACGTCAAGAATG
GGCAGAGCCGTCGAGCTCCAAGGGGAACCAGTTGTCAAGGACGGTCGGCG
TGAACCACTGCATGATTGTTCCGTAGACTGCTGCGTGTATGGAGCGCTTG
TGACGATAACCGCGACAAGCAAGAGCGTGTGCCCTTCACCCCCCACCGAA
CGATTCCCACCCGAGCATTCACCCCGAAAAACTTCATGAAATCCCT
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Coding sequence (CDS) from alignment at Scaffold_614:186100..187945+

>EsuBft2095_4a-0001 ID=EsuBft2095_4a-0001|Name=EsuBft2095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_614:186100..187945+ (Ectocarpus subulatus male Bft15b)
ATGTGCGACTTCATGCTCGACTGCACGAGGGCGCTTATTGACAGCGGGTA
CACCCTGGCTTCCTTCAGGGGGATCCACAGCAACCCCGACTATCCCGTCG
TACTCCCCATCTGGTCAGAGCTTTCGAAGGGCGACCTCCTTCCCCCGCGC
CAGGTGACCGGGCAAGCTGGTGCTCCCAAGAAGGGCGCCCGGCAGCGTGC
GCGATTCCCTGGTCTCAACGACAACTGCCAGCGTGGAGGCGGCCCGGTAG
CCCGAGACGCAGGTGTGCGTGGCGGCGGGGGCAGCGCTGAGCGTGGCGGG
GGCGGCAACGCCCAGCCGCTCCCGGTACATGGCATGGGCAGTGTTCGCAG
CCACGTGGGAGACCTCAACATCGGAGGTTCCGCGGGCGAGCGACCCCCCT
CTAGGGTGTGTGGGGGGCTTGCTGTTGAGCGTTACAGCTCGCAAGACGCT
CCCCGCCGCGATAATGCAGCGGGGGCCGGGTCAAGTGCCGTGCTGAGCCA
ACCCCAAGGCTCTATCGACATGTCGTAG
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