EsuBft2084_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2084_2a-0001
Unique Name	EsuBft2084_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:541451..543058 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2084_2
Protein domains	PR01217
Protein domains	Coil
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	160
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_2a	EsuBft2084_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 541451..543058 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_2a-0001-exon	EsuBft2084_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 541451..543058 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_2a-0001-cds	EsuBft2084_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 541451..543058 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_2a-0001	EsuBft2084_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 541451..543058 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:541451..543058-
coding sequence from alignment at Scaffold_129:541451..543058-

spliced messenger RNA

>EsuBft2084_2a-0001 ID=EsuBft2084_2a-0001|Name=EsuBft2084_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1608bp|location=Sequence derived from alignment at Scaffold_129:541451..543058- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCGAGGGGCAGGCGAGCATCGGTGCCGCGGGGGCCGGGAGCGCG
GGCGTCTAAGCCCCTCGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGG
TGCCTTCCCTGGGCGGCACCCTCTACCTGTTCGTCGCCGTGGACAGCGCC
TCGCGGTGGAACAAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGACAACGGCATCGGCGTCGAGTTCACACCGC
CTGGCGTTCCGCAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATC
AAAAAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGGCCGTGTGTTCAACG
TCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGTGACCGTCGTTGG
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
AGCTAACCCCGGGCGGCGCTTGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGAGGAT
CGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCAGCACCGTCAAGGTCATCAAGGCGTCCACCG
GCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCACCC
GGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCTCCGTT
CACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGA
CCGCCACATCGCCGCCGCCAGCGTCCACGCCGTCGCCCGTTCCCGCTCCC
GCTACTGCTTCGCTCCCTGCCGCTGCCGCAACGCCGCCGCCAGCGACCAC
GCCGCCGCCCGCTCCCACTCCTTCACAGCCTCTCTCTGCTGCTTCGCCGT
CACCGTCGGCGACCCTCGCTCCTGGCCAGACGTCCTCTACCGCTTCGCCG
TCACCGTCAGCGACCCCCGATCCAGACCAGCCGCCGTCGCCGCCGAACCC
CGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGACCGGGTC
CAAAGGCCGAGGGTATGACAGACCAGCGGCTGCCAACCCGTACGAGATTG
GGCACTAGGCACAGCACAGGACATATCTCGATGCTAGACAAGAACACCCT
GGTGTCGATGCTGAAGGCTCGGAACGCGGTGGATGAGGAGCGCAGGGAGC
TGGGGGGAGCAGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCGGCGGAC
CCGGGGGCTGAAGGAGCGGGCTTTCCACTCGCATTTGCCATGCTCCTCGC
CAACCGGGAAGACATTGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGC
AACGCCCTGACCTTCCGCACTGCCAGGCCAGCGACCTTCGTGTTCCAAAG
AGCTACAAAGAGGCTATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTC
CATGCAAAGGGAGTTTTATGGCTTGTTGGAAGCGGGGAACGCAGTCAACG
CTAAGTAG

protein sequence of EsuBft2084_2a-0001

>EsuBft2084_2 ID=EsuBft2084_2|Name=EsuBft2084_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=535bp
MRARGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGTLYLFVAVDSA
SRWNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASASSSHR
LAFRSTTASSRAPSGASKKAGMAARRSAGRVFNVDFASIPGLDERGDRRW
MESAKWAADALNQSATKANPGRRLPHEMFTGEQGPFRVLPFFQPGFMRED
RRTKLDDQATLCYYLNGGDNHPSSTVKVIKASTGRVVYTNNVSWVTSAPP
GEGGSAGITAAPTPPPFTPPVVSINFGPAPTPSTATSPPPASTPSPVPAP
ATASLPAAAATPPPATTPPPAPTPSQPLSAASPSPSATLAPGQTSSTASP
SPSATPDPDQPPSPPNPAMPPLTAHAMRQLRPGPKAEGMTDQRLPTRTRL
GTRHSTGHISMLDKNTLVSMLKARNAVDEERRELGGAGAGEQAGALAAAD
PGAEGAGFPLAFAMLLANREDIDATLRDQRPPEQRPDLPHCQASDLRVPK
SYKEAMASEHRHLWSDSMQREFYGLLEAGNAVNAK

mRNA from alignment at Scaffold_129:541451..543058-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2084_2a-0001 ID=EsuBft2084_2a-0001|Name=EsuBft2084_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1608bp|location=Sequence derived from alignment at Scaffold_129:541451..543058- (Ectocarpus subulatus male Bft15b)
ATGAGGGCGAGGGGCAGGCGAGCATCGGTGCCGCGGGGGCCGGGAGCGCG
GGCGTCTAAGCCCCTCGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGG
TGCCTTCCCTGGGCGGCACCCTCTACCTGTTCGTCGCCGTGGACAGCGCC
TCGCGGTGGAACAAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGACAACGGCATCGGCGTCGAGTTCACACCGC
CTGGCGTTCCGCAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATC
AAAAAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGGCCGTGTGTTCAACG
TCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGTGACCGTCGTTGG
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
AGCTAACCCCGGGCGGCGCTTGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGAGGAT
CGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCAGCACCGTCAAGGTCATCAAGGCGTCCACCG
GCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCACCC
GGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCTCCGTT
CACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGA
CCGCCACATCGCCGCCGCCAGCGTCCACGCCGTCGCCCGTTCCCGCTCCC
GCTACTGCTTCGCTCCCTGCCGCTGCCGCAACGCCGCCGCCAGCGACCAC
GCCGCCGCCCGCTCCCACTCCTTCACAGCCTCTCTCTGCTGCTTCGCCGT
CACCGTCGGCGACCCTCGCTCCTGGCCAGACGTCCTCTACCGCTTCGCCG
TCACCGTCAGCGACCCCCGATCCAGACCAGCCGCCGTCGCCGCCGAACCC
CGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGACCGGGTC
CAAAGGCCGAGGGTATGACAGACCAGCGGCTGCCAACCCGTACGAGATTG
GGCACTAGGCACAGCACAGGACATATCTCGATGCTAGACAAGAACACCCT
GGTGTCGATGCTGAAGGCTCGGAACGCGGTGGATGAGGAGCGCAGGGAGC
TGGGGGGAGCAGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCGGCGGAC
CCGGGGGCTGAAGGAGCGGGCTTTCCACTCGCATTTGCCATGCTCCTCGC
CAACCGGGAAGACATTGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGC
AACGCCCTGACCTTCCGCACTGCCAGGCCAGCGACCTTCGTGTTCCAAAG
AGCTACAAAGAGGCTATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTC
CATGCAAAGGGAGTTTTATGGCTTGTTGGAAGCGGGGAACGCAGTCAACG
CTAAGTAG

Coding sequence (CDS) from alignment at Scaffold_129:541451..543058-

>EsuBft2084_2a-0001 ID=EsuBft2084_2a-0001|Name=EsuBft2084_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1608bp|location=Sequence derived from alignment at Scaffold_129:541451..543058- (Ectocarpus subulatus male Bft15b)
ATGAGGGCGAGGGGCAGGCGAGCATCGGTGCCGCGGGGGCCGGGAGCGCG
GGCGTCTAAGCCCCTCGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGG
TGCCTTCCCTGGGCGGCACCCTCTACCTGTTCGTCGCCGTGGACAGCGCC
TCGCGGTGGAACAAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGACAACGGCATCGGCGTCGAGTTCACACCGC
CTGGCGTTCCGCAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATC
AAAAAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGGCCGTGTGTTCAACG
TCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGTGACCGTCGTTGG
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
AGCTAACCCCGGGCGGCGCTTGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGAGGAT
CGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCAGCACCGTCAAGGTCATCAAGGCGTCCACCG
GCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCACCC
GGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCTCCGTT
CACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGA
CCGCCACATCGCCGCCGCCAGCGTCCACGCCGTCGCCCGTTCCCGCTCCC
GCTACTGCTTCGCTCCCTGCCGCTGCCGCAACGCCGCCGCCAGCGACCAC
GCCGCCGCCCGCTCCCACTCCTTCACAGCCTCTCTCTGCTGCTTCGCCGT
CACCGTCGGCGACCCTCGCTCCTGGCCAGACGTCCTCTACCGCTTCGCCG
TCACCGTCAGCGACCCCCGATCCAGACCAGCCGCCGTCGCCGCCGAACCC
CGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGACCGGGTC
CAAAGGCCGAGGGTATGACAGACCAGCGGCTGCCAACCCGTACGAGATTG
GGCACTAGGCACAGCACAGGACATATCTCGATGCTAGACAAGAACACCCT
GGTGTCGATGCTGAAGGCTCGGAACGCGGTGGATGAGGAGCGCAGGGAGC
TGGGGGGAGCAGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCGGCGGAC
CCGGGGGCTGAAGGAGCGGGCTTTCCACTCGCATTTGCCATGCTCCTCGC
CAACCGGGAAGACATTGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGC
AACGCCCTGACCTTCCGCACTGCCAGGCCAGCGACCTTCGTGTTCCAAAG
AGCTACAAAGAGGCTATGGCGTCGGAGCACCGGCACCTGTGGAGCGACTC
CATGCAAAGGGAGTTTTATGGCTTGTTGGAAGCGGGGAACGCAGTCAACG
CTAAGTAG