Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 946362.XP_004988920.1 |
| ProteomeId | EsuBft207_6 |
| Protein domains | PF13358 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 946362.XP_004988920.1|- |
| Length | 117 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.51e-07 |
| EggNOG OGs | 2D5ST@1|root,2SZIE@2759|Eukaryota,38F03@33154|Opisthokonta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACG
AAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGG
CTGGTTCAGGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGA
CAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCA
GCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCC
TGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTC
TTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCG
GAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGC
CAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGT
ACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAAC
AGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTA
CATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCA
TGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCC
TTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCT
TAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTA
AAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAG
GCAGCCGATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAA
GTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAACCTCA
ATAAGCCGGACAGGTACGTTACAGATGATGTGTCGCCCGTGGGTGACGTC
GAGGAAGGGGTAAGGGAGCAGATCCAGCAGAAAAGCGCAGAGTGGGGTGA
TGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTGCGGTCTTGTGATC
GATTGCTACGCCCATGCACTGGGTGTGCCATGTTCCAACAGCACACTATG
TGATTGCTGTGCGCGGGGGCTTGCGTCCCTGCTTCCAGCTGCTGCAGTTG
TCCTTGAAAAAAAAATCAAAAATATTCA back to topprotein sequence of EsuBft207_6a-0001 >EsuBft207_6 ID=EsuBft207_6|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=332bp
MIMVHAITKWGPLAKLCDGLPIEEGWFRETGSGKKEMEDEETAEFLWQAK
LAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHG
FDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEP
GSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALI
WTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEW
PGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGNLNKPDRYVTD
DVSPVGDVEEGVREQIQQKSAEWGDGSDEVEP back to topmRNA from alignment at Scaffold_358:299982..301159- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)
GTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACG
AAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGG
CTGGTTCAGGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGA
CAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCA
GCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCC
TGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTC
TTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCG
GAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGC
CAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGT
ACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAAC
AGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTA
CATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCA
TGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCC
TTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCT
TAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTA
AAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAG
GCAGCCGATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAA
GTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAACCTCA
ATAAGCCGGACAGGTACGTTACAGATGATGTGTCGCCCGTGGGTGACGTC
GAGGAAGGGGTAAGGGAGCAGATCCAGCAGAAAAGCGCAGAGTGGGGTGA
TGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTGCGGTCTTGTGATC
GATTGCTACGCCCATGCACTGGGTGTGCCATGTTCCAACAGCACACTATG
TGATTGCTGTGCGCGGGGGCTTGCGTCCCTGCTTCCAGCTGCTGCAGTTG
TCCTTGAAAAAAAAATCAAAAATATTCA back to topCoding sequence (CDS) from alignment at Scaffold_358:299982..301159- >EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=999bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)
ATGATCATGGTGCATGCAATCACGAAGTGGGGGCCGTTGGCTAAGCTTTG
TGATGGGTTACCGATCGAAGAGGGCTGGTTCAGGGAAACGGGTAGCGGCA
AGAAGGAAATGGAAGATGAGGAGACAGCAGAGTTTCTGTGGCAGGCTAAG
TTGGCAAAGGGCGATTACCACGCAGCAATGACCGACTCGATGTTCATGGA
GTGGCTTGAACACCGCCTTAGCCCTGCGTACAACGCGATCCCGGAGTTCA
AAGGCAAACGGATGATTCTTGTTCTTGACAACGCCTCATACCACCATGGA
TTTGACGCGGAAGTCAAAGTGCCGGAAACCAACACCAAGAAGCACAACGT
CGATCTGTTGCGTATGTTTGGGGCCAAGTCGATCAGGGTTAGGCGTAAGG
AGGGCGAACAGGGCGTTGTTGAGTACAACTTCGAGGTACCGACAGAGCCT
GGTTCTTCATTCCCTGCAGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGA
GGTAGCAACGGCCACTCGGGAGTACATCCACCTCAATCACCCTGAAAGGC
TCGAGGAACGGGTGGTGACGTTCATGAGGAAAAAGGGGTGGGCGTTGATT
TGGACGCCGCCCTACATGCCGTCCTTTCAACCGATCGAGCTTTTTTGGCA
GCATGGTAAGCAGTACGTCAGCCTTAACTTTGAGTTGAAGCGAAAGATGC
GGGAGGTGTGGGTGCAGATTCGTAAAGGTTGGTACGGGGACAAGGAATGG
CCAGGCCAGGAGGGGGGGTGGAAGGCAGCCGATTGTTCGAAGCTGGTTGA
CCACGCCATTGGAGAGATGAATAAGTGGGTCAAGGACCGTGATGGAGTGC
TTTCTGGTACGATAGGCAACCTCAATAAGCCGGACAGGTACGTTACAGAT
GATGTGTCGCCCGTGGGTGACGTCGAGGAAGGGGTAAGGGAGCAGATCCA
GCAGAAAAGCGCAGAGTGGGGTGATGGCAGCGACGAGGTTGAACCATGA back to top
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