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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FUX7 |
| ProteomeId | EsuBft207_4 |
| Protein domains | IPR002715 |
| Protein domains | G3DSA |
| Protein domains | IPR016641 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | nascent polypeptide-associated complex subunit alpha os:oreoScaffold_omis niloticus gn:naca pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1978 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.06e-119 |
| EggNOG OGs | COG1308@1|root,KOG2239@2759|Eukaryota |
| Ec32 ortholog description | Nascent polypeptide-associated complex NAC domain |
| Ec32 ortholog | Ec-01_008570.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K03626 |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005840,GO:0005854,GO:0005911,GO:0006457,GO:0006458,GO:0006950,GO:0006970,GO:0008150,GO:0009506,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0022626,GO:0030054,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0050896,GO:0051082,GO:0051083,GO:0055044,GO:1990904 |
| Description | protein transport |
| COG category | K |
| BRITE | ko00000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 2000138 |
| GO | 0030239 |
| GO | 0010664 |
| GO | 0051451 |
| GO | 0048742 |
| GO | 0003231 |
| GO | 1901227 |
| GO | 1901228 |
| GO | 0070062 |
| GO | 0005854 |
| GO | 0006810 |
| GO | 0005515 |
| GO | 0006412 |
| GO | 0003713 |
| GO | 0048633 |
| GO | 0017025 |
| GO | 0043403 |
| GO | 0061384 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft207_4a-0001 ID=EsuBft207_4a-0001|Name=EsuBft207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1978bp|location=Sequence derived from alignment at Scaffold_358:303995..309716- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCCTGCCTCGTCTCGTGCACCCCCTCTCCTCTCCCCAGCTCTTGCTGCTG
CTACCCTACTGACCCGAAGATGACGGAGTTCGAAGAGGCAAAGGTTGTGG
CCGACCCAGAAGTTGAGGACATCGAGGGGGACTCTGACGACGACATCCCG
GAGTTGGAGGAGCAGGTTGGAGGCGATGACTCTGCGGAGCCCAAGGGAGG
CAAGCAGAACCGCAATGAAAAGAAGGCGCGAAAGGCCGTGCAGAAGCTCG
GCATGAAGGCGGTCCCGTCCATCATGCGCGTGACGGTGAAGAAGAGCAAG
AACATCCTGTTCGTCATCTCCAAGCCCGACGTGCACAAGAGCCCGTCATC
CAACACGTACGTCATCTTCGGGGAGGCGAAGATCGAGGACCTTTCGGCGC
AGGCACAGCAGCAGGCGGCGGAGCGGTTCAGCGCGCCCGAGGCGGCGGCT
TCTTCCGCAGCAGCCATCCCGGCCGTAAACACGGGCGCGGATGTGGACAC
GGACGAGTTGGTGGACGAGACGGGGGTTGAGCCTAAGGACATCGAGCTCA
TCATGAGCCAGGCATCTTGCACACGGTCTGCGGCAGTCAACGCGTTGAAG
AAGAACGACGGAGACATCGTTAATGCCATCATGGAGCTCACCATGGACTA
AACCCGGCAGTCACGATACTTAAGGAGAGAGTGGGGGCAGCATGTGGAGG
GAGGGGGGGAGTGGTGGGGGAAATAACGTGCGCGAAACGAGTGCGATCGA
GGAAATCGTACTGGCGGCGTGAAGAGTTTGTCCTTTGAGCAGTGCAACAG
GTAATCCTGAGGAGAGCGGCCCAGCAATGCGCTCTGCTCGGCTCGTTGTT
GAGTCGGCTGGCTCGGCGATTTCTCAATTGGCGTCGAAGAGAAGCGGCGG
GATATACCACCCCCTCATTTCTTCTTGCGAGCGCTGCACCAGCACGAGCA
TCCTGTGCCTTATTCGTCGAGAGAGTGCCGACGTGTTGTTATCGATTGGG
GTGCGGGCGGGGTCCGTAGAGAGGGCGCAGGCGAGCCGGCGGATGAGCCA
GGAACGACTAGGAGAGCAAGCCTGCATCCGTTGCAACCACGCGCGGCTCC
AGTTGGTACCCACCCTGCTTGTCATCATAGCGGTTGCCTCTCGCAACCCG
TCTTCTCGGACCCTTTTCCTGCAAATCATTTTCCCTTTCCCGAATTTTTG
TTTTCTTTTTGAGTTGGCCGGCTGGGTGGACTTTGATTCGGGGTCCACGT
CCATTCAAAACAAAATGATTCTCATGTTGCAATCGCATTTTACTTGTGTC
TCTTGTAAGGATGGACGGAGCCACCAAGGAAATATCACGATAGGCTTTCT
TTCCCGCCATCCGCTTTTGACAGCTGCATTTCTCAACTCTTCGGATAGTA
TCCGGGTCGGCCATATATTTGCCAGTTGCTGTCCCCCTGGCCCTTCGTGT
TCCTCACCACGACCGATTGTGTGCCGTCTGTCGTGCCCCTAAAAGCGGGG
GAAACACAACACCCTCACGGGTAGCCCGGTCGGAACAACCGCGATGGGAC
TCCGGCGAATGGGTTTCTTGGGCATGTTCGTGAGCCGGCCGGAACACATT
TGGACCTGTACAATAGTTCCTCTCTGAGGCCCCCTCACAACTCGGGGCAC
ACGTCGGGGTTTTGATTGCGGATAAAAAGAGCCGGCTACAGCAGTAGCAC
CAAGGTTTGACGCCAGATTTACCCCAGTTCTCCACAAGATTACTTGGTTT
TAGAGTTGGGCGATCTCCGGTCTCTTCTCTAAAACCATGCTAGTTTCTGT
TCAATCGACGCTCTCGAGAGTGCTCTATTCGTGTTGCGAGTGGGGTGGAT
AGAAATGTAGCTTGCTGTTGCCGCAGTCCGCCGTCGGGTACAAGAGCTAG
TATCGGCAGTTTAGGTTTAGAGAAATGCGCGTCTCTTCGACCATCAATGC
AAGGTTTGCTCCTTCGATTTCGAGGCCC back to topprotein sequence of EsuBft207_4a-0001 >EsuBft207_4 ID=EsuBft207_4|Name=EsuBft207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MTEFEEAKVVADPEVEDIEGDSDDDIPELEEQVGGDDSAEPKGGKQNRNE
KKARKAVQKLGMKAVPSIMRVTVKKSKNILFVISKPDVHKSPSSNTYVIF
GEAKIEDLSAQAQQQAAERFSAPEAAASSAAAIPAVNTGADVDTDELVDE
TGVEPKDIELIMSQASCTRSAAVNALKKNDGDIVNAIMELTMD back to topmRNA from alignment at Scaffold_358:303995..309716- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft207_4a-0001 ID=EsuBft207_4a-0001|Name=EsuBft207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5722bp|location=Sequence derived from alignment at Scaffold_358:303995..309716- (Ectocarpus subulatus male Bft15b)
GCCTGCCTCGTCTCGTGCACCCCCTCTCCTCTCCCCAGCTCTTGCTGCTG
CTACCCTACTGACCCGAAGATGACGGAGTTCGAAGAGGCAAAGGTTGTGG
CCGACCCAGAAGTTGAGGTGCGTGGAGCTTCGCCGCTAGTGAACGCCGCC
CCACTACGTCGAAAGATGCGATGAACACCATTGATTGTGTCGTAGCGCCA
CACACAGGCAAGTGAGAGCCAGCAGCAGCAGCAGCCACGAAGCGGCTTGG
TCCGATGCCTGCTTCGCGCTGCATGCGACGAGCGATTTCAGCTGCATGCC
TCTCTGGTTTTGTCGCTCGTGCTAAGTGAGCGCGCTGCCGTGTCGAAAGT
GATTTGTTCTTCCATTCGTGTCCTGTGTGGCACCCACGAAGCTCTTCCTC
TCTTTGATTCATGTCTACCACTTGTTTTTGCCGACAGCAACAGCAGCGGT
ACCATAGCCTGTGATGGCGGCGAGACTCGACGCCGGATCCTTTGTATCCA
CGACTCCCGGTCGTCTGTACCAAGAATTTTGTTCGTCGGTACTGAACCTC
TCCGGTTGGCTATCTCGCGGCTTATTCATATTCGTCTTGCTGTACGACAC
CCCTACTTTCTCCCGCTGGCATTCTTGGTTACTCCTCGATGACCATGGGT
GTGTACATAATGCCTTCAGCAGCACAGCTTTTGACGCCCACAGCAGTAGC
AGCCCGCCACAGGGTAGTTCATGCTCTGCGGGATGCGCCAAATGTTGTCC
TCATAATGGCCACGAGATTGTTTGAAGAGCCACTCTCCCCGGCAGACTCT
GTCCCACTCGATCTTGGTTTCTGTGTATATTTCGTTTTTTCGTTTTTGCC
ATGGTGTCGGCGGGCCTCCTCTGGATTCGCACCTACAACGCGTGCACCCA
CCCGCCCGTGCCTTGTGTTGCCGGCGCGATGCTGCTGCAGGACATCGAGG
GGGACTCTGACGACGACATCCCGGAGTTGGAGGAGCAGGTTGGAGGCGAT
GACTCTGCGGAGGTAAGCAGCGACAGCGCGAGCGGCACGGGGGGCGGCGG
CAGGCTTTATTGTGCTGACCTTTTGTCCAGAGAAGGACACCCATCCGCAG
CGGAAGAAGCACGGGCGGTTGCGGCGGCGGCAATAGCGGCGATTATGATG
CTGAAATTCGCCTTATGCATACGAAGAACACATATCCATACGCCGGTGTA
TGTTTGGGAGGTGATGGCCGCCGGCGGTTGGTCCCCCCTCCCCCCCCTTC
CCCTCCCGCGTTCTACAAGCCTTTGATGTGGCCTCCGATGATGGGCGGTA
GCTCGGTTGCAGCCGCTACATCCAGCGTCCACACTGCAGTAGCTTACGCC
ATCCCAAGTTCACATTCGTTTCGATTTTGTACACCACGAGCAAGAGAGAG
CCACGCGTTCGTGGTACCAAACGCCCACCATCAGCAACAGACCATCACAA
CAGCGCTGCATTAACAAAGGACCACGGTGTGTACAACCTGGGTACCTTGA
GCGAGGGTGGGCATTTGCTCTGTGAGGATGTTGTGGGACTCAGTCAAGGG
TCACCTACAAACGCTCATGTAGTGGCGTAGGAAGAACCGTACGACGCCCA
ACTAGATACCGGGAGGGGGGGAAGGGGGGTAGCAGAGGGAGGTATAGTAC
AACAAATACCGTCGTGCCGGTGCAAGAGGTTGTCCGGAGGTTATTGTAGC
GTAGGGCGTGCGGCCTGGCCTGCTCGTGGCTGGCTCTCTTCGGAAGCCAG
CCACGAGCAGGCCAGGCCCTCTACCCTAAGCTACATGAACCTCCCGATAT
CCACTTGCACCGACACGATGGAGACTGCTCGATCAGTTGCGAACGATCGG
CACGACGACTTTTCACTCCTGACTGATGGGGTGGGGTGTACTCATAGTCG
TGCATGCCGTAGTCGTTAGATCATTGACCTCGCATTCCTACAAAGCCGGG
ACGCAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGC
GAAGCGCCGTGAGGTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCT
GCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGACAG
CTGCGTAATTTATGACTTATATTATTTTCTGGTGCTTGACCATTTCAACA
CAACGTGGTGCGATCATCCCCCTTGCGCGGAGTGAGGGTTCTCCACCTCG
CACAACATGATCTACTCGACCACCTTCATGGTTACCGCCAAAAAGAAAAC
AGAGGTGAAAAAAAAGCAAACGGTAACCTGGTTGCCGAGTTCACGAAGTG
AATTGGCTTGTTTTACAACGTCGTTGCCAAGCGAAGAAAACCCAATCCCG
ATGGCAAACACCGGGGTGGGGCGTCCTGATTGATGGGGGGGAGGGGGGGG
CGGAAATGCGGAAGTTGATAAACACCAAAACGAATGCGGCCGGTATTTTC
GTTTTGGCGGACATAGTGTCTGGATCAGACATTAAAAGAACAGTCGACGA
AAAGAAGGTGCTGTGGGGCGGTATTTCAACCACTTAGCATACACATTTCC
ACCATCTACGACATTTCGGTACTCATGTTTCTGATATTCCCCCCGGTACC
CCCGCCTCTTCGTGACGCCCGGTTCTCCGCTTCCCCTGTTATTGTGGGCA
ACCAAAAAACTTTGCCCTGGAATGACGGCTCGAATCTTGGGAAATATCTT
ACCCTCCTTTCCTGCACACACACGCCCGGGAAACTGCCGAAAACGAATGG
GACGAAAACCCAAAACACAGCCCAAGGGAGGCAAGCAGAACCGCAATGAA
AAGAAGGCGCGAAAGGCCGTGCAGAAGCTCGGCATGAAGGCGGTCCCGTC
CATCATGCGCGTGACGGTGAAGAAGAGCAAGAACATCCTGTTCGTCATCT
CCAAGCCCGACGTGCACAAGAGCCCGTCATCCAACACGTACGTCATCTTC
GGGGAGGCGAAGATCGAGGACCTTTCGGCGCAGGCACAGCAGCAGGCGGC
GGAGCGGTTCAGCGCGCCCGAGGTGATGGGTGGTTTGCTGCCGGCTGTGG
GTTTTTGTGGCTGATCAAGTTTTGGGTACAGAGTGGTGTGCTGCGGCGGG
TTGGACTGTTTGTCGGACAGCTACGCCTGTACTGGTGCTGTTCGAAAATC
GTTTGCATCCAGTTTCAGATAAACTCCTTTGAAAAACTGTGCAGCTGCAT
AATTGGCTCCACACAAACTACCTCTCGATTCTTCCCGCGCATGTTTTTGC
GTGTTTTTGGTTTTGGGCGCCTTTACCTTGTCTTGCACCCCAGCTCACTG
ACGGAGTCCGAGAACACCCTCCCTTTTCCAGTTTGCTCTTAACCTCTTGT
TTTTGCTCCCTTCGTGTTGTCATGTATGTGTGTTTATTTTTGCTTTTTTT
GGGGGGGGGGCTGGAAACCAATGTTCAAAACAGGCGGCGGCTTCTTCCGC
AGCAGCCATCCCGGCCGTAAACACGGGCGCGGATGTGGACACGGACGAGT
TGGTGGACGAGACGGGGGTTGAGCCTAAGGACATCGAGCTCATCATGAGC
CAGGTGTGCATGCATGCGACTCTACAGCTGGAACAGCAGTATGTATACAA
TCTTGCGTTTTGTTTGTCAACTATCTCGGTGCCCTTGTATGGTTCGTACG
ACTGCGGTCGCAACTTGAGTGGCATTGCTTGCACGTTTGATGAGCCCTTG
GGTTGTGAGAGTTATTATCGGCTGTCCAGGTAGAATTGGTGCCGCCCAGG
GACATCAAGTCCTGGCCTTGTTACGCCAGCGCCGTTGCTATCTGTTGTTC
CTCTGGAGTATTTTCCTCGCTTTGTGTTGAGAAGGTTATTTATCTTTCCT
TGGTACTGCCAGCACTGCGTTCGCGGCGTCAACGTGTTGATGATGCTGTC
GAATTTTCGCTTGTAAGGGCTGTCCCAGCGTTGTGTTGTCATCGCCCGAT
GAGAGAAGTTGAGGTTATCATGACCACGTGGTATGCGTATCTAGCTTGTG
GAAAACCAGTTTATGTTATTGTTGTCCTCCATGGTTCGTACCCGGGACTC
ATGAGAAGCGGTGTTTTGTATCCGTATGCACATGTGCAATTCTTTGCGTG
AAAACAACCCGTGTAACAACCGCTCAGATTTGCTGGCGCAAAGGTAGTTT
GTTCATACGTCCGTTGTGTGGCACGTTGTGGTCATCTGGACACCTTTGTG
GTCCTTGAGACCCTCGTCTTTTCTTCTTCTCGCAACATTAATACTTCTTT
GGCTTTCGATGTATTCCGACCGGCGCCCCCCCCCCTCCCCCTCACGTTGC
TGCAGGCATCTTGCACACGGTCTGCGGCAGTCAACGCGTTGAAGAAGAAC
GACGGAGACATCGTTAATGCCATCATGGAGCTCACCATGGACTAAACCCG
GCAGTCACGATACTTAAGGAGAGAGTGGGGGCAGCATGTGGAGGGAGGGG
GGGAGTGGTGGGGGAAATAACGTGCGCGAAACGAGTGCGATCGAGGAAAT
CGTACTGGCGGCGTGAAGAGTTTGTCCTTTGAGCAGTGCAACAGGTAATC
CTGAGGAGAGCGGCCCAGCAATGCGCTCTGCTCGGCTCGTTGTTGAGTCG
GCTGGCTCGGCGATTTCTCAATTGGCGTCGAAGAGAAGCGGCGGGATATA
CCACCCCCTCATTTCTTCTTGCGAGCGCTGCACCAGCACGAGCATCCTGT
GCCTTATTCGTCGAGAGAGTGCCGACGTGTTGTTATCGATTGGGGTGCGG
GCGGGGTCCGTAGAGAGGGCGCAGGCGAGCCGGCGGATGAGCCAGGAACG
ACTAGGAGAGCAAGCCTGCATCCGTTGCAACCACGCGCGGCTCCAGTTGG
TACCCACCCTGCTTGTCATCATAGCGGTTGCCTCTCGCAACCCGTCTTCT
CGGACCCTTTTCCTGCAAATCATTTTCCCTTTCCCGAATTTTTGTTTTCT
TTTTGAGTTGGCCGGCTGGGTGGACTTTGATTCGGGGTCCACGTCCATTC
AAAACAAAATGATTCTCATGTTGCAATCGCATTTTACTTGTGTCTCTTGT
AAGGATGGACGGAGCCACCAAGGAAATATCACGATAGGCTTTCTTTCCCG
CCATCCGCTTTTGACAGCTGCATTTCTCAACTCTTCGGATAGTATCCGGG
TCGGCCATATATTTGCCAGTTGCTGTCCCCCTGGCCCTTCGTGTTCCTCA
CCACGACCGATTGTGTGCCGTCTGTCGTGCCCCTAAAAGCGGGGGAAACA
CAACACCCTCACGGGTAGCCCGGTCGGAACAACCGCGATGGGACTCCGGC
GAATGGGTTTCTTGGGCATGTTCGTGAGCCGGCCGGAACACATTTGGACC
TGTACAATAGTTCCTCTCTGAGGCCCCCTCACAACTCGGGGCACACGTCG
GGGTTTTGATTGCGGATAAAAAGAGCCGGCTACAGCAGTAGCACCAAGGT
TTGACGCCAGATTTACCCCAGTTCTCCACAAGATTACTTGGTTTTAGAGT
TGGGCGATCTCCGGTCTCTTCTCTAAAACCATGCTAGTTTCTGTTCAATC
GACGCTCTCGAGAGTGCTCTATTCGTGTTGCGAGTGGGGTGGATAGAAAT
GTAGCTTGCTGTTGCCGCAGTCCGCCGTCGGGTACAAGAGCTAGTATCGG
CAGTTTAGGTTTAGAGAAATGCGCGTCTCTTCGACCATCAATGCAAGGTT
TGCTCCTTCGATTTCGAGGCCC back to topCoding sequence (CDS) from alignment at Scaffold_358:303995..309716- >EsuBft207_4a-0001 ID=EsuBft207_4a-0001|Name=EsuBft207_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_358:303995..309716- (Ectocarpus subulatus male Bft15b)
ATGACGGAGTTCGAAGAGGCAAAGGTTGTGGCCGACCCAGAAGTTGAGGA
CATCGAGGGGGACTCTGACGACGACATCCCGGAGTTGGAGGAGCAGGTTG
GAGGCGATGACTCTGCGGAGCCCAAGGGAGGCAAGCAGAACCGCAATGAA
AAGAAGGCGCGAAAGGCCGTGCAGAAGCTCGGCATGAAGGCGGTCCCGTC
CATCATGCGCGTGACGGTGAAGAAGAGCAAGAACATCCTGTTCGTCATCT
CCAAGCCCGACGTGCACAAGAGCCCGTCATCCAACACGTACGTCATCTTC
GGGGAGGCGAAGATCGAGGACCTTTCGGCGCAGGCACAGCAGCAGGCGGC
GGAGCGGTTCAGCGCGCCCGAGGCGGCGGCTTCTTCCGCAGCAGCCATCC
CGGCCGTAAACACGGGCGCGGATGTGGACACGGACGAGTTGGTGGACGAG
ACGGGGGTTGAGCCTAAGGACATCGAGCTCATCATGAGCCAGGCATCTTG
CACACGGTCTGCGGCAGTCAACGCGTTGAAGAAGAACGACGGAGACATCG
TTAATGCCATCATGGAGCTCACCATGGACTAA back to top
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