EsuBft207_27a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft207_27a-0001
Unique Name	EsuBft207_27a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7FQI8
ProteomeId	EsuBft207_27
Protein domains	TMhelix
Protein domains	IPR023201
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	IPR002208
Owner	apollo_admin@sb-roscoff.fr
Note	protein transport protein sec61 subunit alpha os:dictyostelium discoideum gn:sec61a pe:3 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	729
Hectar predicted targeting category	signal anchor
Evalue	8.03e-105
EggNOG OGs	COG0201@1\|root,KOG1373@2759\|Eukaryota
Ec32 ortholog description	Sec61
Ec32 ortholog	Ec-01_008840.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	SEC61A1
KEGG ko	ko:K10956
KEGG TC	3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathway	ko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG Module	M00401
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Description	protein transport
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:83621..85953+
coding sequence from alignment at Scaffold_358:83621..85953+

spliced messenger RNA

>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=729bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTG
CGCCAATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGG
TGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTC
CACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGA
TGAGGAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGG
CTGTGGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCG
GTGGGTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCA
GGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCA
TCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTC
AACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTT
ACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCAC
GATTATCGGGCATGCGGGGATGGTTTTGA

protein sequence of EsuBft207_27a-0001

>EsuBft207_27 ID=EsuBft207_27|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MYGPLSVLGAGNAILIVCQLFLMGVMLILMDQVLQKGWGIGSGVSLFMCA
NICSTVWWKTFSWVSVTTARGVEKEGAFFAIFHLLLTRPDKVLFGPPRDE
ELTGLPNLVNLAATAAVAMTVIYFQKWRIELPVGVTIHLVVKSQKYRGQE
GRFPIKLFYTSNMPLILQSALVANLYMISQLVNDRSSSSILARVAVVLLL
ALLFSHGKGLRNWPPRLSGMRGWF

mRNA from alignment at Scaffold_358:83621..85953+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2333bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGAGAGCGAGGTGGATGGACGTCGGTGTCGGCTGC
TAGCGGCTCGCAAGCTGGTAGCAGCGGCAGGGGTTGCAAGGGTTATGCCC
TGTGGTGTGGAGAGGGAAACAATGTGGCCTTCGAGAAGAGAAGGATATTG
AGCATACGGGAATGAGTTGAGGAGGCTTGATTCCTACATCTCGGCTTACA
TGTCACACTCCATAGCTGTGTTGTATCTGCTGCTGTACGGCGACTCACCG
ATGTATTCTGGACGGGTCCGTTGTGTCCAGCGTCTCTTTTCTCCGTGATG
CCGTTGCCACCGCCTCTACTGCTGCTGATGCTTCTTCCTCGCGGTGCGAC
CAGCATTGCGCCTTTTTGTGATGTGTACACCGCTGCCGGTGTTGATGCCT
GACTTGCCTCCTCCCCCGCCCCCCTGCAGGTGGGGGATAGGCTCGGGGGT
GTCGCTCTTCATGTGCGCCAATATCTGCTCGACCGTCTGGTGGAAGACGT
TCAGCTGGGTGTCGGTGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCC
TTCTTCGCCATCTTCCACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTT
TGGTCCGCCGCGGGATGAGGAGCTGTATGTGTGGGGTGTTGGCGCGCTTT
CCGAGGTTGTTCCGGAGTGTTCCGGAGGTGTTGGGACGATCTCACCTCCA
CGTACACATTTTGCTTGTAGGCCCACGGGTCGCACGGGTTCGGTGTTGAT
GTTGGTACTGCCGTTGGCGGTGGACAAGACACACCGTGAGGCATGCCGTC
AGTGTTGGAATCAGGCCTTCCTCCCTCCCTGCTTTCGGGTGATCCTGCCG
TGCCCCCCGCCCCCTCCCCTTAACGAATCATCCNNNNNNNNNNNNNNNNN
NNNNNNNNNACTCAAAGACGTGTTCTTCAGGACCGGGCTGCCGAACCTTG
TGAACCTGGCGGCCACTGCGGCTGTGGCGATGACGGTTATTTACTTCCAG
AAGTGGCGGATAGAACTACCGGTGGGTGTGACAATACACTTGGTGGTTTG
ATTTTTGCGTGTGAGAGAGAGGAGGTGCGTGTTTTTAGGCTGACATGGAC
CGCGCTGGTGGGTCGCCAACGAACGAGAACAAACGCGTAAGTCTCAGCGA
GTTAAAAAGATCGTAAAGATTTTTCTTCAATCCGCGCAATGTGTCTCTGT
GGTAAGAGCAGTGTTAGGTTGGCATCCCGTCCACGGCCTGTCTGTCTTGC
TTTGTTTCGTCTTTCATTTTCATAGGGTGTCATTTTTGTTCTCAGGTTGG
GACCTGTTGTGGGGTGTGTGTATGGGAAAGGATGTAGCTTGCCTCGGTGA
CAACGTTGAGATAGCGGAATGAAATGATAAAGAGGCGTGCAAGTTGTGGG
GGTTGCGGCCGCCTTCCGGGGACTATATCGCGAAGAAGCCTCGACTCTCG
GAGGTCTGTTCGGCCTTCCAAGAGGACACGTGATGCAACGCTCTCTCTCT
CTGACTGGTCTGTTCGATTTCAAGAGAAGAAGCGCGGGATGCACGCAGCA
GTCCTCGAAAAATGGGTATTAGTTGTTGGCAACGATTAGGGCTGAGAGGT
AAACATAGACAGTTTGTTGAGGTCTGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNCCCCCCCCCCCCCCCCCCCCCCTCG
ATTCGGCATCGGTCGGTGAGATCATGCGATGCGAACGCATGAGGTTATCC
ACCACAGCTGGGCACCGCTGGGATGATCAACTCCACCACACCACACGCTC
AACGATATGGCGCACGCTCAACCGTGTTCCTTGCCGCTCGCCAACGATTC
AGAGCAACCGTAATCTGATCACCGCTTGCTTGGTTTCCTCTGCTGCCGTG
CTCTTTGCCGGGGGGATGGGGGGAATAGGTCAAGTCCCAGAAGTACAGGG
GCCAGGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCG
CTCATCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTT
GGTCAACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTAC
TCTTACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCC
CCACGATTATCGGGCATGCGGGGATGGTTTTGA

Coding sequence (CDS) from alignment at Scaffold_358:83621..85953+

>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
ATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCATCGT
GTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAGGTCC
TCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTGCGCC
AATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGGTGAC
CACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTCCACC
TCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGATGAG
GAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGGCTGT
GGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCGGTGG
GTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCAGGAA
GGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCATCCT
GCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTCAACG
ACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTTACTT
GCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCACGATT
ATCGGGCATGCGGGGATGGTTTTGA