EsuBft207_27a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_27a-0001
Unique NameEsuBft207_27a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:83621..85953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQI8
ProteomeIdEsuBft207_27
Protein domainsTMhelix
Protein domainsIPR023201
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsIPR002208
Ownerapollo_admin@sb-roscoff.fr
Noteprotein transport protein sec61 subunit alpha os:dictyostelium discoideum gn:sec61a pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length729
Hectar predicted targeting categorysignal anchor
Evalue8.03e-105
EggNOG OGsCOG0201@1|root,KOG1373@2759|Eukaryota
Ec32 ortholog descriptionSec61
Ec32 orthologEc-01_008840.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameSEC61A1
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Descriptionprotein transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0045047
GO0030176
GO0016043
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_27aEsuBft207_27aEctocarpus subulatus male Bft15bgeneScaffold_358 83621..85953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_27a-0001EsuBft207_27Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 83675..85953 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_27a-0001-exonEsuBft207_27a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 83621..83784 +
EsuBft207_27a-0001-exonagat-exon-57952Ectocarpus subulatus male Bft15bexonScaffold_358 84200..84394 +
EsuBft207_27a-0001-exonagat-exon-57951Ectocarpus subulatus male Bft15bexonScaffold_358 84701..84815 +
EsuBft207_27a-0001-exonagat-exon-57953Ectocarpus subulatus male Bft15bexonScaffold_358 85699..85953 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_27a-0001-exonagat-five_prime_utr-5255Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 83621..83674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_27a-0001-cdsEsuBft207_27a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 83675..83784 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=729bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTG
CGCCAATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGG
TGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTC
CACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGA
TGAGGAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGG
CTGTGGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCG
GTGGGTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCA
GGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCA
TCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTC
AACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTT
ACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCAC
GATTATCGGGCATGCGGGGATGGTTTTGA
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protein sequence of EsuBft207_27a-0001

>EsuBft207_27 ID=EsuBft207_27|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MYGPLSVLGAGNAILIVCQLFLMGVMLILMDQVLQKGWGIGSGVSLFMCA
NICSTVWWKTFSWVSVTTARGVEKEGAFFAIFHLLLTRPDKVLFGPPRDE
ELTGLPNLVNLAATAAVAMTVIYFQKWRIELPVGVTIHLVVKSQKYRGQE
GRFPIKLFYTSNMPLILQSALVANLYMISQLVNDRSSSSILARVAVVLLL
ALLFSHGKGLRNWPPRLSGMRGWF
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mRNA from alignment at Scaffold_358:83621..85953+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2333bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGAGAGCGAGGTGGATGGACGTCGGTGTCGGCTGC
TAGCGGCTCGCAAGCTGGTAGCAGCGGCAGGGGTTGCAAGGGTTATGCCC
TGTGGTGTGGAGAGGGAAACAATGTGGCCTTCGAGAAGAGAAGGATATTG
AGCATACGGGAATGAGTTGAGGAGGCTTGATTCCTACATCTCGGCTTACA
TGTCACACTCCATAGCTGTGTTGTATCTGCTGCTGTACGGCGACTCACCG
ATGTATTCTGGACGGGTCCGTTGTGTCCAGCGTCTCTTTTCTCCGTGATG
CCGTTGCCACCGCCTCTACTGCTGCTGATGCTTCTTCCTCGCGGTGCGAC
CAGCATTGCGCCTTTTTGTGATGTGTACACCGCTGCCGGTGTTGATGCCT
GACTTGCCTCCTCCCCCGCCCCCCTGCAGGTGGGGGATAGGCTCGGGGGT
GTCGCTCTTCATGTGCGCCAATATCTGCTCGACCGTCTGGTGGAAGACGT
TCAGCTGGGTGTCGGTGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCC
TTCTTCGCCATCTTCCACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTT
TGGTCCGCCGCGGGATGAGGAGCTGTATGTGTGGGGTGTTGGCGCGCTTT
CCGAGGTTGTTCCGGAGTGTTCCGGAGGTGTTGGGACGATCTCACCTCCA
CGTACACATTTTGCTTGTAGGCCCACGGGTCGCACGGGTTCGGTGTTGAT
GTTGGTACTGCCGTTGGCGGTGGACAAGACACACCGTGAGGCATGCCGTC
AGTGTTGGAATCAGGCCTTCCTCCCTCCCTGCTTTCGGGTGATCCTGCCG
TGCCCCCCGCCCCCTCCCCTTAACGAATCATCCNNNNNNNNNNNNNNNNN
NNNNNNNNNACTCAAAGACGTGTTCTTCAGGACCGGGCTGCCGAACCTTG
TGAACCTGGCGGCCACTGCGGCTGTGGCGATGACGGTTATTTACTTCCAG
AAGTGGCGGATAGAACTACCGGTGGGTGTGACAATACACTTGGTGGTTTG
ATTTTTGCGTGTGAGAGAGAGGAGGTGCGTGTTTTTAGGCTGACATGGAC
CGCGCTGGTGGGTCGCCAACGAACGAGAACAAACGCGTAAGTCTCAGCGA
GTTAAAAAGATCGTAAAGATTTTTCTTCAATCCGCGCAATGTGTCTCTGT
GGTAAGAGCAGTGTTAGGTTGGCATCCCGTCCACGGCCTGTCTGTCTTGC
TTTGTTTCGTCTTTCATTTTCATAGGGTGTCATTTTTGTTCTCAGGTTGG
GACCTGTTGTGGGGTGTGTGTATGGGAAAGGATGTAGCTTGCCTCGGTGA
CAACGTTGAGATAGCGGAATGAAATGATAAAGAGGCGTGCAAGTTGTGGG
GGTTGCGGCCGCCTTCCGGGGACTATATCGCGAAGAAGCCTCGACTCTCG
GAGGTCTGTTCGGCCTTCCAAGAGGACACGTGATGCAACGCTCTCTCTCT
CTGACTGGTCTGTTCGATTTCAAGAGAAGAAGCGCGGGATGCACGCAGCA
GTCCTCGAAAAATGGGTATTAGTTGTTGGCAACGATTAGGGCTGAGAGGT
AAACATAGACAGTTTGTTGAGGTCTGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNCCCCCCCCCCCCCCCCCCCCCCTCG
ATTCGGCATCGGTCGGTGAGATCATGCGATGCGAACGCATGAGGTTATCC
ACCACAGCTGGGCACCGCTGGGATGATCAACTCCACCACACCACACGCTC
AACGATATGGCGCACGCTCAACCGTGTTCCTTGCCGCTCGCCAACGATTC
AGAGCAACCGTAATCTGATCACCGCTTGCTTGGTTTCCTCTGCTGCCGTG
CTCTTTGCCGGGGGGATGGGGGGAATAGGTCAAGTCCCAGAAGTACAGGG
GCCAGGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCG
CTCATCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTT
GGTCAACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTAC
TCTTACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCC
CCACGATTATCGGGCATGCGGGGATGGTTTTGA
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Coding sequence (CDS) from alignment at Scaffold_358:83621..85953+

>EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
ATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCATCGT
GTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAGGTCC
TCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTGCGCC
AATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGGTGAC
CACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTCCACC
TCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGATGAG
GAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGGCTGT
GGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCGGTGG
GTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCAGGAA
GGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCATCCT
GCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTCAACG
ACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTTACTT
GCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCACGATT
ATCGGGCATGCGGGGATGGTTTTGA
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