EsuBft207_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft207_26a-0001
Unique Name	EsuBft207_26a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7FQI8
ProteomeId	EsuBft207_26
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR10906
Protein domains	IPR023201
Protein domains	TRANSMEMBRANE
Protein domains	IPR002208
Owner	apollo_admin@sb-roscoff.fr
Note	protein transport protein sec61 subunit alpha isoform 2 os:mus musculus gn:sec61a2 pe:2 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	1584
Hectar predicted targeting category	other localisation
Evalue	5.92e-97
EggNOG OGs	COG0201@1\|root,KOG1373@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	SEC61A1
KEGG ko	ko:K10956
KEGG TC	3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathway	ko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG Module	M00401
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Description	protein transport
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:86251..88426+
coding sequence from alignment at Scaffold_358:86251..88426+

spliced messenger RNA

>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGAGAGTGAGAGAGAAATTGGCTTCGTTGACCAGAGAGAGAGTGAGA
AAGAGTGAGAAACATGGTTTCTTTGACCTCATACCCGACAAAGTCAACGA
GCGCATCACGGAGTCCTACAATAACTCGTCCCTCCTTACACACAGGTTGC
CGTGTGCCTACGTGGTGTGTGTCTTGGCGATGATCTTCACTTTGTGGTAA
AAGAAAGCACAAGGTTAAATCGGCTTCTTTTCGGCTATACTGGCGCCCCT
TTTTGCGAACGTCACAACGCTTACACAGATTCGGCTGCTGGGCCAGTGGG
AGGAGATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCC
TACTACATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTT
CCACTCCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTT
CGAAGGCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGACGTGGCGAGG
CAGTTGCGGGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTT
GCACCACGTGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCA
TGTGCATCGGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGG
TCGGGAACGGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGA
AATATTCATGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAGT
TGCTCGAGCAAGTAGTAATATTAATAGTACAGCGTGCGCCCAGCATTCCT
ATGTCATGCAGAATTTTGGGGGCTTAGTTGGGGAACGGTTAGCGACGGGG
TGGGCGCTGTGTGTGTGCTTGGGGTACAGTTGAGAGTTGGATTTTACGCA
GTATTTTGTGTTTGTGAGCTAAGTGTGCGGTTGCCGCGCACGTGCCGGCC
TGGTTGTGTCCCGGTTGTGTCCTGTAAGTCGTAGTCGGGGAGGCAAGCAT
CCAGTTGAGCTCCTATGGGGCGAGGCAGCTGTATGAGGTACGTGTGTATG
CAATGAGCACGAAAGACTGGGTTGCGTAGCGCCAGTCTTGAAGCGCCAGT
CTAGAGAGTCGGAAGTTATGAAGTTGCCGCACACGCGATTCAGGGTAGGC
GAAACCTTCGGCCTCGCGAGAGAGACAAAGGTAGAAATCGGAAACCTCGT
GGTTGGTGCTTTGGTCAATTTGTTGGGGACCAGAGGAGGGTCGCCACAAG
AAGCAATCGAGGACTTGGCGACGCGGTACAAAGTCTGATAGACTTGCAAC
TATTGCAGTACTCCTGCCCAACCGTTCAGAACCGAACGTTCGGTCGGCAT
GTAGCTCCTTACATACGGCCGTATGGTCTAAGCATATCTTGACGTAAATG
TTGCGCAGTGGAAATTGTTGGGGGTAATTTGAGCAAAGGTTGCTCGCTGG
TGTTGCTGCGAAAGTGGCAACGCCGCAAGGATGGTGTCATGAGGAATCAG
CTGAGCCCACACGGCAGTCCTGGTGCGCGCCAACGCTTTCTTGCCACCTC
GCGGTACAGTGGGGGGGGGCTCAGTAGTGCCGGT

protein sequence of EsuBft207_26a-0001

>EsuBft207_26 ID=EsuBft207_26|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MDGYPGKSVPVGGIAYYITPPATLSNVFTDPFHSIFYLTFVLMSCAIFSK
AWMEVSGSASLDVARQLREQQMVMKGHRDTALHHVLDRYIPPAAAFGGMC
IGALTVAADLFGAVGSGTGIIMAVTIIHQYTEIFMQEQKELMGASAF

mRNA from alignment at Scaffold_358:86251..88426+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2176bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)
GAGAGAGAGTGAGAGAGAAATTGGCTTCGTTGACCAGAGAGAGAGTGAGA
AAGAGTGAGAAACATGGTTTCTTTGACCTCATACCCGACAAAGTCAACGA
GCGCATCACGGAGTCCTACAATAACTCGTCCCTCCTTACACACAGGTTGC
CGTGTGCCTACGTGGTGTGTGTCTTGGCGATGATCTTCACTTTGTGGTAA
AAGAAAGCACAAGGTTAAATCGGCTTCTTTTCGGCTATACTGGCGCCCCT
TTTTGCGAACGTCACAACGCTTACACAGATTCGGCTGCTGGGCCAGTGGG
AGGAGATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCC
TACTACATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTT
CCACTCCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTT
CGAAGGCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGTACGTCATCTT
CGCGGACGGATCTGTCAAGGAAACAGGGGGGTTCATGTGGATGGTCGGGG
GTGGGGGAGAGGGAGGGGCAGGAGACCGTCATTTTTTTCTTTTTAGTTTC
AAATCTTCAGGCACTGAATTGACCCAGGTGGAGCACATTTTTGAGAGCCG
TTTCCAACATGTACTTACCGTATCACAGAGGAGAGGTGAGGATGTCAAGA
TGTTCGCAGTCACTCTCACCGTTCAGCTGTTGTACGGTTTCCTGTCAGAG
ACCAACATGTGCCGGGTTCTGGCGGACGAAACTGAAAACGAATGCGTCCA
TGGAACCCCTCTGTTGTGATGCTAAAGGTTGGCGCGTTGTGTTCCTTCCA
CCCCTTGCCCTCCACCCCACACTCTGCCCGAAAACAAGCTCATCAGGTAT
GTGAGCACGTCGATTATTTTTGCGCGTGGGTCAAACGTGTCGCTTCTGTT
TTTGTTGGGAAAAAATGGTGTGTGTTTCGTCTCTTGCTGACGATGTAGGC
AATATTGCACCCGACGAAACTTACGCCCTGCCTCCCGTTCCGGCCCTTCC
CTGCTCCTGTTTTTCCATCCCCACATTCAGGACGTGGCGAGGCAGTTGCG
GGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTTGCACCACG
TGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCATGTGCATC
GGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGGTCGGGAAC
GGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGAAATATTCA
TGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAGTTGCTCGAG
CAAGTAGTAATATTAATAGTACAGCGTGCGCCCAGCATTCCTATGTCATG
CAGAATTTTGGGGGCTTAGTTGGGGAACGGTTAGCGACGGGGTGGGCGCT
GTGTGTGTGCTTGGGGTACAGTTGAGAGTTGGATTTTACGCAGTATTTTG
TGTTTGTGAGCTAAGTGTGCGGTTGCCGCGCACGTGCCGGCCTGGTTGTG
TCCCGGTTGTGTCCTGTAAGTCGTAGTCGGGGAGGCAAGCATCCAGTTGA
GCTCCTATGGGGCGAGGCAGCTGTATGAGGTACGTGTGTATGCAATGAGC
ACGAAAGACTGGGTTGCGTAGCGCCAGTCTTGAAGCGCCAGTCTAGAGAG
TCGGAAGTTATGAAGTTGCCGCACACGCGATTCAGGGTAGGCGAAACCTT
CGGCCTCGCGAGAGAGACAAAGGTAGAAATCGGAAACCTCGTGGTTGGTG
CTTTGGTCAATTTGTTGGGGACCAGAGGAGGGTCGCCACAAGAAGCAATC
GAGGACTTGGCGACGCGGTACAAAGTCTGATAGACTTGCAACTATTGCAG
TACTCCTGCCCAACCGTTCAGAACCGAACGTTCGGTCGGCATGTAGCTCC
TTACATACGGCCGTATGGTCTAAGCATATCTTGACGTAAATGTTGCGCAG
TGGAAATTGTTGGGGGTAATTTGAGCAAAGGTTGCTCGCTGGTGTTGCTG
CGAAAGTGGCAACGCCGCAAGGATGGTGTCATGAGGAATCAGCTGAGCCC
ACACGGCAGTCCTGGTGCGCGCCAACGCTTTCTTGCCACCTCGCGGTACA
GTGGGGGGGGGCTCAGTAGTGCCGGT

Coding sequence (CDS) from alignment at Scaffold_358:86251..88426+

>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=444bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)
ATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCCTACTA
CATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTTCCACT
CCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTTCGAAG
GCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGACGTGGCGAGGCAGTT
GCGGGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTTGCACC
ACGTGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCATGTGC
ATCGGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGGTCGGG
AACGGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGAAATAT
TCATGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAG