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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FQI7 |
| ProteomeId | EsuBft207_25 |
| Protein domains | PF13857 |
| Protein domains | PTHR24198 |
| Protein domains | IPR002110 |
| Protein domains | IPR020683 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 26s proteasome non-atpase regulatory subunit 10 os:homo sapiens gn:psmd10 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 873 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.71e-130 |
| EggNOG OGs | COG0666@1|root,KOG4412@2759|Eukaryota |
| Ec32 ortholog description | Ankyrin repeat |
| Ec32 ortholog | Ec-01_008830.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | ANKRD42 |
| KEGG ko | ko:K06694,ko:K10329,ko:K17593 |
| Description | proteasome regulatory particle assembly |
| COG category | L |
| BRITE | ko00000,ko01009,ko03051,ko04121 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0044093 |
| GO | 0031227 |
| GO | 0051338 |
| GO | 0051128 |
| GO | 0031401 |
| GO | 0031324 |
| GO | 0072659 |
| GO | 0031396 |
| GO | 0043231 |
| GO | 0030054 |
| GO | 0032507 |
| GO | 0045184 |
| GO | 0030424 |
| GO | 0005515 |
| GO | 0005856 |
| GO | 0051050 |
| GO | 0016020 |
| GO | 0051171 |
| GO | 1902532 |
| GO | 0000502 |
| GO | 1903047 |
| GO | 0042981 |
| GO | 0043269 |
| GO | 0044459 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=873bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGCGCCGAGCCGAAC
GTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACGCCGCCTCGAACGG
CCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGCGGCGACGTGTCGG
TGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGCTACGCGGGAAAGA
CAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGGCTGATCCGGCGGC
GAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCACCGGACTACAAGA
TGAACCCGGTGGTTCACGATGAGGAGCATCAAGACGCAGACACGGGCCCC
TGTATGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAG
CGAAGTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAA
AGCCTAGAGTAGAGGCAGTATGA back to topprotein sequence of EsuBft207_25a-0001 >EsuBft207_25 ID=EsuBft207_25|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MLLLGCPNCSASVNATERTRAIRRGNLAEVKRFLDEGGNVETVGGRFHST
LLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAAT
AAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALALLEAGAEPN
VGDVDGRTPVHHAASNGRRDVIAVLLGFGGDVSVVDRELDTPLHRATRER
QNLAISLLESAGADPAAKNCWGELAGTLAPDYKMNPVVHDEEHQDADTGP
CMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKPRVEAV back to topmRNA from alignment at Scaffold_358:91029..92347- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1319bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGTAGGCGTAGGTGG
TAATTGGTTCCTGTACGATCTGAAAGCAAAATTGCGGTGTGTGGCATCGA
GCATGATCGATTGACATGAAGTGGCGCTGTTTTGCAGCCAACCTTTCAAG
AAATGTTCACTTTCAGCTAGCGACGGATCAATGGCTAGCAAGCTGGACCC
CCGTCAACAACATGAAGTCAACAACAGGCGCAGCCACAACGCAAGCACCA
AACCCTGAGCACCCTTCACCACAAGGTAACCACAGCCACATGAATAATGT
AAGCATAATTCGTCGGCGCCAATATCACGACGACGTTTGTTTATGGCAGG
CGCCGAGCCGAACGTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACG
CCGCCTCGAACGGCCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGC
GGCGACGTGTCGGTGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGC
TACGCGGGAAAGACAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGG
CTGATCCGGCGGCGAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCA
CCGGACTACAAGATGAACCCGGTGGTTCACGATGGTAATAATCAATTGTC
ATTGTTTTTCCATATCTAAACACTACAATTACAACCAAACACATACCGAG
TGCTTGAACCCTCCATGCTTTATCCGTGTTTCCTTTGTGACATTGACGCC
GGTTTCACATCCAACAGAGGAGCATCAAGACGCAGACACGGGCCCCTGTA
TGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAGCGAA
GTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAAAGCC
TAGAGTAGAGGCAGTATGA back to topCoding sequence (CDS) from alignment at Scaffold_358:91029..92347- >EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGCGCCGAGCCGAAC
GTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACGCCGCCTCGAACGG
CCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGCGGCGACGTGTCGG
TGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGCTACGCGGGAAAGA
CAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGGCTGATCCGGCGGC
GAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCACCGGACTACAAGA
TGAACCCGGTGGTTCACGATGAGGAGCATCAAGACGCAGACACGGGCCCC
TGTATGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAG
CGAAGTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAA
AGCCTAGAGTAGAGGCAGTATGA back to top
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