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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft2071_5 |
| Protein domains | SSF56672 |
| Protein domains | Coil |
| Protein domains | IPR013103 |
| Protein domains | IPR005135 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1968 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.59e-37 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2071_5a-0001 ID=EsuBft2071_5a-0001|Name=EsuBft2071_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1968bp|location=Sequence derived from alignment at Scaffold_195:12804..17063- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCGCCCATCCACGGAACTACCACGCAGCGGTCAACGGACCAGATGC CGTTGGATGGATGAAAAGCATGGAGGAGAAGAATCGCTCCTTACTAGACC ACGACGTTTATGAGTGGGTCGATCCCCCGCGCGATGCTCAAATCATCCCG TCAAAATACATCTACAAATGGAAGTACAACGAGGCCGGCATCGCTGTGCG ACAGAAATCGAGAATCGTAGTGCAAGGATTTCACGAAGCTGAGACCGGAA CCGCCAATGCTGCACCGGTAGCGTCTCTCCAAGCCGTCCATCTGATAATT GCGCATGCTGCCAAGAATGGACTTGTTCTTCGCCAAGCCGACATCAGGAC GGCGTTCCTCCACGCGAGGATGGAACCGAGATCGAAACCAGTGTACGTCA TTCCCCCGGAAGGATTCTCGTGCGAAAGCGAGAGAGCCAGGCAAGTCTGG AAGCTCAGAGCGTGGCTTTACGGGTTGGGTTTTTCCCCAAAAGGCTGGTG GGGCACTCCGCACGATTGTCTCCTGAAGATCGGATTTGTTGAGAGCACCG CTGAACCGTGCTTGTACATCCTGGACGACGGAGATGTGCTGCTTCTCGTT TATGTGGATGACATTCTGCTGACCGGGGAGAGCGAGAACAAAGTGCTGAG CATAGTACTTGTGCCAGGAGGTGTGAACTTGGATCTAGACTACGGGCCTA TGTTCGAGGCGCTATTAAGCGTCGGTGAACCGGCAAAAGAACTGAAAGGA ACCACAACCCCCGCCGAACACTCGGATTGGGAAGGCCGAGGAGGATGGAA GCAGAAACTGTGGAAGGTAGACAAGTTGGAGCTGCTGCTGTTTGGGATTC CAAGGGACATGACGAGGATAGGGTTCAAGAACTGTTGTGACAGGGAGGGA CTGCACTGCCTAGCAAGGAGACAAGTAGGCAGAGAGCATGAACACGTCCG GGTGAAATTGACCAAGGGAGACAGCCAAGAGTGCTTAGGGGTTGGAATCG AGAAGCTGTCGAACTACGTAAGAAAGTTTGGATGGAGGGTTTGCATCGCA AACATGATAGAAACAGAGAAGGTAAAGAGACAAGAGGCGAGGGCGACGGA GGCGAAGAAAAGACCAAGCGGGGGAGGCGAGCAGGCAAGTCAGAAGAAGT TCGAGAAGAAGCGGAAGGCGAACGATGGTGTGCGCAAAATCTCCAATAGG GAAAAGCACAAGCTGAGCGTCGGGTCGTGGAACGTGTGCGGGTTCGCGAG GAGTGAGCGCAAGCGGTTGGAAATAGTGGACCAAGTAGAACGACGCAATC TAGACGTGGCGGGGATTCAAGAGACGTGGGAATCGAAGGATGGTGACGTG GCAGTCCGGAAGAAAGTAACAGTAGAGGACACGGAAACTACGGTGTCAGG AATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGAC TGCAACTGCAAATTGACGCGGCGAAGAAGTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTAGAGATCGCAAAAGACT GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA GCAAGGAAGCTGCGCCCAATACTCGCAAACCGGCACCTCGATATACGCGT CACATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGGTAGAGTACGCCG GAGAAGAATGGGAAGAAAATAAGAAGGTGGTGAAAGAACTCGAGGCGGCG CAGATGAAAGCAGCGAAAATCATCCTGCGATGCTTCCAGTGCACAAGTAA TGCAGCCGTCAGGGCAGAATTGGGGATCCAATCCTTACCGTCGGGAAGAG ACGCGAGGAAGCTGACATGGCAGCATCACATGTGCGGGATGGGAGAGGAG AGGTTGCCGAGAGTNNNN back to topprotein sequence of EsuBft2071_5a-0001 >EsuBft2071_5 ID=EsuBft2071_5|Name=EsuBft2071_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=656bp
MPAHPRNYHAAVNGPDAVGWMKSMEEKNRSLLDHDVYEWVDPPRDAQIIP SKYIYKWKYNEAGIAVRQKSRIVVQGFHEAETGTANAAPVASLQAVHLII AHAAKNGLVLRQADIRTAFLHARMEPRSKPVYVIPPEGFSCESERARQVW KLRAWLYGLGFSPKGWWGTPHDCLLKIGFVESTAEPCLYILDDGDVLLLV YVDDILLTGESENKVLSIVLVPGGVNLDLDYGPMFEALLSVGEPAKELKG TTTPAEHSDWEGRGGWKQKLWKVDKLELLLFGIPRDMTRIGFKNCCDREG LHCLARRQVGREHEHVRVKLTKGDSQECLGVGIEKLSNYVRKFGWRVCIA NMIETEKVKRQEARATEAKKRPSGGGEQASQKKFEKKRKANDGVRKISNR EKHKLSVGSWNVCGFARSERKRLEIVDQVERRNLDVAGIQETWESKDGDV AVRKKVTVEDTETTVSGMLFADDFVGMSDTPEGLQLQIDAAKKXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXGVEIAKDCSWNAHMSKVAEKGKAR ARKLRPILANRHLDIRVTLTVLKSVIVPPVEYAGEEWEENKKVVKELEAA QMKAAKIILRCFQCTSNAAVRAELGIQSLPSGRDARKLTWQHHMCGMGEE RLPRVX back to topmRNA from alignment at Scaffold_195:12804..17063- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2071_5a-0001 ID=EsuBft2071_5a-0001|Name=EsuBft2071_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4260bp|location=Sequence derived from alignment at Scaffold_195:12804..17063- (Ectocarpus subulatus male Bft15b) ATGCCCGCCCATCCACGGAACTACCACGCAGCGGTCAACGGACCAGATGC
CGTTGGATGGATGAAAAGCATGGAGGAGAAGAATCGCTCCTTACTAGACC
ACGACGTTTATGAGTGGGTCGATCCCCCGCGCGATGCTCAAATCATCCCG
TCAAAATACATCTACAAATGGAAGTACAACGAGGCCGGCATCGCTGTGCG
ACAGAAATCGAGAATCGTAGTGCAAGGATTTCACGAAGCTGAGACCGGAA
CCGCCAATGCTGCACCGGTAGCGTCTCTCCAAGCCGTCCATCTGATAATT
GCGCATGCTGCCAAGAATGGACTTGTTCTTCGCCAAGCCGACATCAGGAC
GGCGTTCCTCCACGCGAGGATGGAACCGAGATCGAAACCAGTGTACGTCA
TTCCCCCGGAAGGATTCTCGTGCGAAAGCGAGAGAGCCAGGCAAGTCTGG
AAGCTCAGAGCGTGGCTTTACGGGTTGGGTTTTTCCCCAAAAGGCTGGTG
GGGCACTCCGCACGATTGTCTCCTGAAGATCGGATTTGTTGAGAGCACCG
CTGAACCGTGCTTGTACATCCTGGACGACGGAGATGTGCTGCTTCTCGTT
TATGTGGATGACATTCTGCTGACCGGGGAGAGCGAGAACAAAGTGCTGAG
CATAGTAGATTAGTTGAATGAGCGTTTCGAAACGGTGGACCTGGGAGGAG
CCAGGTTCCTGCTCGGTATGGGAATCAACCGAGACAGAGCCGCAGGGACA
ATTATTTGGAACAGGAAGCGTATACCAACGCAGTGTTGGACAAGTTCGGC
ATGGCCGACGCGCGTCCGACGACATCTCCGTCTGAGGCTGGACCGATGTC
CGTCTTGGATGACGAGGTGTTGTCAGCGGTTAACTCGCAGCTTCCATATC
AACCCAAGGACTAAGCACCTTGACGTAAAGTTTCACCACGTAAGGTCGCT
GGTAGCTGATGGAGTCGTAGACGTGAAGCAAATATCGACGTCGCTTCAGA
AAGCGGATATTTTTACAAAAGGGCTAAACCCGTCGGAGTTTCTCCGCGCC
CGTGGCATGCTGTTAGGAGTTTGATCATCTCCCCTCTTCGTAATCAGACC
TTATGTCTTGAGGGTTGGATGGTGTATGTGTGTGTATATGTTTAAAGAAT
ATTCGGGAGATTTGTGTTGAAGGAAAACATTCGCTGCTGATGCAACGCAG
CTGAGAAAGGCAGAAAAATTGATAATGAGTCAGAAGATAACATTGTTTCG
AGAGGACATGGATATTGTTTCGAGAGGACAGTGAGAGAGAATTGGATCTG
ATGCATTGTTACTAGAATGGCGTAGTTCTTGAGAGGACATGTTGGAGTAA
TTGCAGTAGAAGAACGACTCTATTCAACTGCATTGGTTTATGCAGTATTG
TGAAGGCGTTGCCAAGTCTGTACTGCAATTACTCCAACATGTCCTCTCAA
GAACTACGTCATGCTAGTACAAATGCATCAGATCCAATTCTCTCTCGCAT
CACATGCTAGCTACCTTGTAGCCATAGCTGAAGGAATAGCTGCACAGCGA
CTGCAGTGACAGTGCTGTTGCCTCAACAGGTACTTGTGCCAGGAGGTGTG
AACTTGGATCTAGACTACGGGCCTATGTTCGAGGCGCTATTAAGCGTCGG
TGAACCGGCAAAAGAACTGAAAGGAACCACAACCCCCGCCGAACACTCGG
ATTGGGAAGGCCGAGTAATCCGTATACCTTCCTGAAAAAACACGAAATAC
AAGTGGCCACGGTCTAGTCGCCGTAGAGATCATGAGGATGGTGAAGAAGC
AGGGAGGATGGAAGCAGAAACTGTGGAAGGTAGACAAGTTGGAGCTGCTG
CTGTTTGGGATTCCAAGGGACATGACGAGGATAGGGTTCAAGAACTGTTG
TGACAGGGAGGGACTGCACTGCCTAGCAAGGAGACAAGTAGGCAGAGAGC
ATGAACACGTCCGGGTGAAATTGACCAAGGGAGACAGCCAAGAGTGCTTA
GGGGTTGGAATCGAGAAGCTGTCGAACTACGTAAGAAAGTTTGGATGGAG
GGTTTGCATCGCAAACATGATAGAAACAGAGAAGGTAAAGAGACAAGAGG
CGAGGGCGACGGAGGCGAAGAAAAGACCAAGCGGGGGAGGCGAGCAGGCA
AGTCAGAAGAAGTTCGAGAAGAAGCGGAAGGCGAACGATGGTGTGCGCAA
AATCTCCAATAGGGAAAAGCACAAGCTGAGCGTCGGGTCGTGGAACGTGT
GCGGGTTCGCGAGGAGTGAGCGCAAGCGGTTGGAAATAGTGGACCAAGTA
GAACGACGCAATCTAGACGTGGCGGGGATTCAAGAGACGTGGGAATCGAA
GGATGGTGACGTGGTAAGCAAACTAGGGAAATACCGGTGGGTAGGGAAGG
CAAGAAAGGGCTTAGACCCGAAGAAAAGGGGGGAGGGGGGAGTCGGATTC
CTGGTCAAGGAACACTTGTTTGACGTGGTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
GAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCTAAATTCTT
CGACATTGAGTAGGGGGTCCCACAAGGTTGAACACTGTCCCCAACATTGT
TCCAGGTGTTCATCAACGATCTATCTGTTGGAAGTCGTAAAGGCAGTCCG
GAAGAAAGTAACAGTAGAGGACACGGAAACTACGGTGTCAGGAATGCTGT
TTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTG
CAAATTGACGCGGCGAAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGAGTAGAGATCGCAAAAGACTGCTCGTGG
AATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAAGGAA
GCTGCGCCCAATACTCGCAAACCGGCACCTCGATATACGCGTCACATTGA
CGGTTTTGAAGAGCGTAATCGTACCGCCGGTAGAGTACGCCGGAGAAGAA
TGGGAAGAAAATAAGAAGGTGGTGAAAGAACTCGAGGCGGCGCAGATGAA
AGCAGCGAAAATCATCCTGCGATGCTTCCAGTGCACAAGTAATGCAGCCG
TCAGGGCAGAATTGGGGATCCAATCCTTACCGTCGGGAAGAGACGCGAGG
AAGCTGACATGGCAGCATCACATGTGCGGGATGGGAGAGGAGAGGTTGCC
GAGAGTNNNN back to topCoding sequence (CDS) from alignment at Scaffold_195:12804..17063- >EsuBft2071_5a-0001 ID=EsuBft2071_5a-0001|Name=EsuBft2071_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1968bp|location=Sequence derived from alignment at Scaffold_195:12804..17063- (Ectocarpus subulatus male Bft15b) ATGCCCGCCCATCCACGGAACTACCACGCAGCGGTCAACGGACCAGATGC CGTTGGATGGATGAAAAGCATGGAGGAGAAGAATCGCTCCTTACTAGACC ACGACGTTTATGAGTGGGTCGATCCCCCGCGCGATGCTCAAATCATCCCG TCAAAATACATCTACAAATGGAAGTACAACGAGGCCGGCATCGCTGTGCG ACAGAAATCGAGAATCGTAGTGCAAGGATTTCACGAAGCTGAGACCGGAA CCGCCAATGCTGCACCGGTAGCGTCTCTCCAAGCCGTCCATCTGATAATT GCGCATGCTGCCAAGAATGGACTTGTTCTTCGCCAAGCCGACATCAGGAC GGCGTTCCTCCACGCGAGGATGGAACCGAGATCGAAACCAGTGTACGTCA TTCCCCCGGAAGGATTCTCGTGCGAAAGCGAGAGAGCCAGGCAAGTCTGG AAGCTCAGAGCGTGGCTTTACGGGTTGGGTTTTTCCCCAAAAGGCTGGTG GGGCACTCCGCACGATTGTCTCCTGAAGATCGGATTTGTTGAGAGCACCG CTGAACCGTGCTTGTACATCCTGGACGACGGAGATGTGCTGCTTCTCGTT TATGTGGATGACATTCTGCTGACCGGGGAGAGCGAGAACAAAGTGCTGAG CATAGTACTTGTGCCAGGAGGTGTGAACTTGGATCTAGACTACGGGCCTA TGTTCGAGGCGCTATTAAGCGTCGGTGAACCGGCAAAAGAACTGAAAGGA ACCACAACCCCCGCCGAACACTCGGATTGGGAAGGCCGAGGAGGATGGAA GCAGAAACTGTGGAAGGTAGACAAGTTGGAGCTGCTGCTGTTTGGGATTC CAAGGGACATGACGAGGATAGGGTTCAAGAACTGTTGTGACAGGGAGGGA CTGCACTGCCTAGCAAGGAGACAAGTAGGCAGAGAGCATGAACACGTCCG GGTGAAATTGACCAAGGGAGACAGCCAAGAGTGCTTAGGGGTTGGAATCG AGAAGCTGTCGAACTACGTAAGAAAGTTTGGATGGAGGGTTTGCATCGCA AACATGATAGAAACAGAGAAGGTAAAGAGACAAGAGGCGAGGGCGACGGA GGCGAAGAAAAGACCAAGCGGGGGAGGCGAGCAGGCAAGTCAGAAGAAGT TCGAGAAGAAGCGGAAGGCGAACGATGGTGTGCGCAAAATCTCCAATAGG GAAAAGCACAAGCTGAGCGTCGGGTCGTGGAACGTGTGCGGGTTCGCGAG GAGTGAGCGCAAGCGGTTGGAAATAGTGGACCAAGTAGAACGACGCAATC TAGACGTGGCGGGGATTCAAGAGACGTGGGAATCGAAGGATGGTGACGTG GCAGTCCGGAAGAAAGTAACAGTAGAGGACACGGAAACTACGGTGTCAGG AATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGAC TGCAACTGCAAATTGACGCGGCGAAGAAGTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTAGAGATCGCAAAAGACT GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA GCAAGGAAGCTGCGCCCAATACTCGCAAACCGGCACCTCGATATACGCGT CACATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGGTAGAGTACGCCG GAGAAGAATGGGAAGAAAATAAGAAGGTGGTGAAAGAACTCGAGGCGGCG CAGATGAAAGCAGCGAAAATCATCCTGCGATGCTTCCAGTGCACAAGTAA TGCAGCCGTCAGGGCAGAATTGGGGATCCAATCCTTACCGTCGGGAAGAG ACGCGAGGAAGCTGACATGGCAGCATCACATGTGCGGGATGGGAGAGGAG AGGTTGCCGAGAGTNNNN back to top
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