EsuBft2071_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2071_4a-0001
Unique Name	EsuBft2071_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:7494..9939 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2071_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	238
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a	EsuBft2071_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 7494..9939 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a-0001	EsuBft2071_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 7576..7725 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a-0001-exon	EsuBft2071_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 7494..9654 +
EsuBft2071_4a-0001-exon	agat-exon-54184	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 9720..9939 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a-0001-exon	agat-five_prime_utr-5224	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_195 7494..7575 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a-0001-cds	EsuBft2071_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 7576..7725 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2071_4a-0001-exon	agat-three_prime_utr-8036	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 7726..9654 +
EsuBft2071_4a-0001-exon	agat-three_prime_utr-8037	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 9720..9939 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:7494..9939+
coding sequence from alignment at Scaffold_195:7494..9939+

spliced messenger RNA

>EsuBft2071_4a-0001 ID=EsuBft2071_4a-0001|Name=EsuBft2071_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2381bp|location=Sequence derived from alignment at Scaffold_195:7494..9939+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGA
AGAGGTACACCTTAAGATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCT
GTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATANNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAAGATCGGCTCGGGACG
CTTGAGGTTTACCGACTGCTGTGGAGCTCCTCCACTCGTAGAGCCCGCCA
CGACCACCACCTGGTCTTGTGGTGAAGAACCCGTTGCGGGACTACCCGTA
CCGGGAGAACCACCCGCACCGGGAGATGCGGTCGAACCACCACTCGCGTT
ACTCATGCTGCCACCACCTCCCCTGCGGGCCACTACACCAATACCCTCAG
TACTCGAGCACGCCAGTACGGGCCCACGATCACTCGCAGGTGCGAAGATG
TACCGATTCAGAATTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGG
TAATTCGATGGAAGTGTCACAAGGGTCTTTGTAGGATCGACTCCAAGAGG
TGTTCTCAGGACTGACACACATTGTGTCCTTGGGAAAATATCCAAGTCAG
GAGAAAAAGTGTGCACCCAAGGAGATTCGAACCAGTATCCTGCCGCTGAC
ACTATATGCGAAGGTGTACCGATTCAGGCAA

protein sequence of EsuBft2071_4a-0001

>EsuBft2071_4 ID=EsuBft2071_4|Name=EsuBft2071_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRAQKLNCTSVPPFDYSSITPSLSHSIPKRKIADYSIXXXXXXXXXXXXX

mRNA from alignment at Scaffold_195:7494..9939+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2071_4a-0001 ID=EsuBft2071_4a-0001|Name=EsuBft2071_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2446bp|location=Sequence derived from alignment at Scaffold_195:7494..9939+ (Ectocarpus subulatus male Bft15b)
TCTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGA
AGAGGTACACCTTAAGATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCT
GTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATANNNNNNN
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CTTGAGGTTTACCGACTGCTGTGGAGCTCCTCCACTCGTAGAGCCCGCCA
CGACCACCACCTGGTCTTGTGGTGAAGAACCCGTTGCGGGACTACCCGTA
CCGGGAGAACCACCCGCACCGGGAGATGCGGTCGAACCACCACTCGCGTT
ACTCATGCTGCCACCACCTCCCCTGCGGGCCACTACACCAATACCCTCAG
TACTCGAGCACGCCAGTACGGGCCCACGATCACTCGCAGGTGCGAAGATG
TACCGATTCAGGTATAAGTCAATCGACAGATACCCTGCGAATCGGGTGGG
TCCTCCTTAAGACTCTCCACCCACAGAATTACCCTCAACTGGGAACCTCT
TGTGGCCAGGATGGGTAATTCGATGGAAGTGTCACAAGGGTCTTTGTAGG
ATCGACTCCAAGAGGTGTTCTCAGGACTGACACACATTGTGTCCTTGGGA
AAATATCCAAGTCAGGAGAAAAAGTGTGCACCCAAGGAGATTCGAACCAG
TATCCTGCCGCTGACACTATATGCGAAGGTGTACCGATTCAGGCAA

Coding sequence (CDS) from alignment at Scaffold_195:7494..9939+

>EsuBft2071_4a-0001 ID=EsuBft2071_4a-0001|Name=EsuBft2071_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_195:7494..9939+ (Ectocarpus subulatus male Bft15b)
ATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAG
TAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCCG
ACTACAGCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN